Wall clock time and date at job start Mon Mar 30 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33386 * 125.20733 * 2 1 4 4 C 1.38421 * 114.92502 * 180.20671 * 3 2 1 5 5 C 1.50698 * 122.54087 * 179.76603 * 4 3 2 6 6 H 1.09007 * 110.54740 * 217.59132 * 5 4 3 7 7 C 1.54994 * 110.62327 * 94.70737 * 5 4 3 8 8 C 1.54806 * 102.09486 * 204.31596 * 7 5 4 9 9 C 1.54103 * 104.18845 * 20.88159 * 8 7 5 10 10 C 1.52999 * 109.88145 * 242.45742 * 9 8 7 11 11 C 1.50694 * 109.88042 * 121.45170 * 9 8 7 12 12 H 1.08002 * 120.00179 * 0.30610 * 11 9 8 13 13 C 1.37879 * 120.00472 * 180.30928 * 11 9 8 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 O 1.43745 * 107.41881 * 1.95298 * 9 8 7 20 20 C 1.33388 * 114.91868 * 359.49098 * 4 3 2 21 21 C 1.50698 * 125.20408 * 180.25076 * 20 4 3 22 22 S 1.75885 * 109.59456 * 0.27230 * 20 4 3 23 23 H 1.09003 * 109.46902 * 180.28464 * 1 2 3 24 24 H 1.08993 * 109.47019 * 300.28692 * 1 2 3 25 25 H 1.08996 * 109.46875 * 60.29080 * 1 2 3 26 26 H 1.08005 * 122.53668 * 359.97399 * 3 2 1 27 27 H 1.09001 * 110.90635 * 86.12047 * 7 5 4 28 28 H 1.08998 * 110.93767 * 322.53237 * 7 5 4 29 29 H 1.08998 * 110.49055 * 262.20727 * 8 7 5 30 30 H 1.08994 * 110.59935 * 139.61220 * 8 7 5 31 31 H 1.08998 * 109.46670 * 299.69058 * 10 9 8 32 32 H 1.08996 * 109.47020 * 59.69099 * 10 9 8 33 33 H 1.08999 * 109.47131 * 179.69049 * 10 9 8 34 34 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47577 * 89.99971 * 21 20 4 36 36 H 1.09002 * 109.47076 * 210.00643 * 21 20 4 37 37 H 1.09001 * 109.46688 * 330.00086 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9481 -0.0104 6 1 5.5133 1.6777 -0.6357 7 6 5.1261 2.2704 1.4330 8 6 5.6142 3.7332 1.2978 9 6 4.9113 4.2501 0.0275 10 6 5.9536 4.6223 -1.0289 11 6 4.0686 5.4538 0.3619 12 1 4.0349 5.8247 1.3757 13 6 3.3404 6.0817 -0.6262 14 7 3.3817 5.6303 -1.8608 15 14 2.2951 7.5733 -0.2116 16 1 1.6171 8.0596 -1.4400 17 1 1.2761 7.1976 0.8011 18 1 3.1618 8.6488 0.3336 19 8 4.0751 3.1891 -0.4635 20 6 3.9751 -0.4478 0.0025 21 6 5.3860 -0.9772 0.0051 22 16 2.5210 -1.4372 0.0078 23 1 -0.3633 -1.0277 0.0051 24 1 -0.3633 0.5183 0.8873 25 1 -0.3633 0.5093 -0.8926 26 1 1.8670 2.0894 -0.0004 27 1 5.9425 1.6143 1.7349 28 1 4.2943 2.2010 2.1339 29 1 6.6967 3.7644 1.1743 30 1 5.3131 4.3197 2.1658 31 1 6.6028 5.4059 -0.6384 32 1 6.5510 3.7445 -1.2749 33 1 5.4494 4.9816 -1.9260 34 1 2.8691 6.0718 -2.5560 35 1 5.7266 -1.0991 1.0332 36 1 5.4134 -1.9409 -0.5035 37 1 6.0386 -0.2743 -0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309497713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:04 Heat of formation + Delta-G solvation = -40.761570 kcal Electronic energy + Delta-G solvation = -18654.455824 eV Core-core repulsion = 15908.330277 eV Total energy + Delta-G solvation = -2746.125547 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63248 -38.64016 -34.96740 -34.05160 -32.67838 -31.36087 -30.17414 -27.59535 -26.92478 -25.07634 -23.36629 -21.77327 -21.23299 -19.13197 -18.66957 -17.87928 -16.69834 -16.57391 -15.93788 -15.24198 -15.12014 -14.89000 -14.35932 -14.19722 -14.13574 -14.07141 -13.72024 -13.49785 -13.17506 -12.92992 -12.78867 -12.61334 -12.49078 -12.34165 -12.28823 -12.07210 -11.90329 -11.82763 -11.49120 -11.20649 -10.93494 -10.57527 -9.87437 -9.25819 -9.10405 -8.02698 -6.25238 0.07337 0.73357 1.00777 1.40627 1.41936 1.49150 1.78778 2.42979 3.11855 3.68126 3.87076 4.01078 4.10398 4.22234 4.24506 4.42200 4.50725 4.54412 4.70823 4.73993 4.80056 4.82474 4.91520 4.95152 5.02452 5.04685 5.07769 5.17108 5.22787 5.26736 5.38770 5.42830 5.54246 5.65973 5.76656 6.14257 6.36477 6.63017 7.09936 7.48982 8.98100 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.006634 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.365954 B = 4219.436552 C = 5073.453617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.194 4.194 3 C -0.135 4.135 4 C -0.106 4.106 5 C 0.120 3.880 6 H 0.062 0.938 7 C -0.124 4.124 8 C -0.138 4.138 9 C 0.210 3.790 10 C -0.141 4.141 11 C -0.543 4.543 12 H 0.055 0.945 13 C 0.033 3.967 14 N -0.888 5.888 15 Si 0.948 3.052 16 H -0.284 1.284 17 H -0.276 1.276 18 H -0.267 1.267 19 O -0.371 6.371 20 C -0.187 4.187 21 C -0.080 4.080 22 S 0.118 5.882 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.257 0.743 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -14.078 4.570 14.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.310 4.310 3 C -0.165 4.165 4 C -0.117 4.117 5 C 0.059 3.941 6 H 0.079 0.921 7 C -0.162 4.162 8 C -0.176 4.176 9 C 0.172 3.828 10 C -0.199 4.199 11 C -0.581 4.581 12 H 0.074 0.926 13 C -0.170 4.170 14 N -0.526 5.526 15 Si 0.773 3.227 16 H -0.210 1.210 17 H -0.201 1.201 18 H -0.191 1.191 19 O -0.291 6.291 20 C -0.304 4.304 21 C -0.138 4.138 22 S 0.383 5.617 23 H 0.105 0.895 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.129 0.871 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.092 -15.588 4.263 16.160 hybrid contribution -0.261 2.809 -0.037 2.821 sum -0.169 -12.779 4.226 13.460 Atomic orbital electron populations 1.20376 0.86185 1.03759 1.03279 1.24703 1.01169 0.95371 1.09791 1.19881 0.93378 0.99134 1.04086 1.18701 0.94518 0.93911 1.04614 1.21594 0.92419 0.85618 0.94434 0.92077 1.22933 1.00831 0.96361 0.96092 1.22987 0.99991 0.95596 0.98977 1.19747 0.88118 0.85817 0.89080 1.22039 0.97504 0.98316 1.02027 1.21434 1.30033 1.11895 0.94736 0.92636 1.25739 0.97098 0.99240 0.94904 1.70108 1.40553 1.40624 1.01273 0.85800 0.79238 0.80173 0.77494 1.20980 1.20123 1.19149 1.89260 1.50584 1.13381 1.75905 1.24437 1.00842 0.94948 1.10141 1.20439 0.87993 1.01594 1.03808 1.83514 0.95225 1.08174 1.74834 0.89499 0.90221 0.90731 0.87091 0.88601 0.92422 0.90851 0.92148 0.94081 0.95344 0.92384 0.93353 0.89167 0.89656 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.38 71.24 0.74 -1.15 16 2 C -0.19 -6.11 6.51 24.59 0.16 -5.95 16 3 C -0.14 -5.34 9.41 21.21 0.20 -5.14 16 4 C -0.11 -4.00 5.04 -20.92 -0.11 -4.10 16 5 C 0.12 4.92 3.19 30.53 0.10 5.02 16 6 H 0.06 2.41 6.97 -2.38 -0.02 2.40 16 7 C -0.12 -4.53 6.57 31.89 0.21 -4.32 16 8 C -0.14 -5.68 6.26 31.58 0.20 -5.48 16 9 C 0.21 10.69 0.74 -11.17 -0.01 10.68 16 10 C -0.14 -6.98 8.39 71.98 0.60 -6.38 16 11 C -0.54 -30.60 8.26 25.60 0.21 -30.38 16 12 H 0.06 3.07 7.33 -2.91 -0.02 3.04 16 13 C 0.03 1.84 5.26 84.66 0.45 2.29 16 14 N -0.89 -52.78 10.93 21.45 0.23 -52.55 16 15 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 O -0.37 -19.62 9.24 -148.98 -1.38 -21.00 16 20 C -0.19 -5.61 6.50 24.59 0.16 -5.45 16 21 C -0.08 -1.77 10.05 71.24 0.72 -1.06 16 22 S 0.12 3.12 23.31 -56.49 -1.32 1.80 16 23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 26 H 0.11 5.16 7.66 -2.91 -0.02 5.14 16 27 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 28 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 29 H 0.07 2.67 7.70 -2.39 -0.02 2.65 16 30 H 0.06 2.51 7.40 -2.39 -0.02 2.50 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 3.25 6.03 -2.39 -0.01 3.23 16 34 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.71 6.83 -2.39 -0.02 1.70 16 Total: -1.00 -65.71 312.30 4.24 -61.47 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.05 Total: 15.25 kcal Atomic # 6 Polarization: -55.04 SS G_CDS: 3.63 Total: -51.42 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.23 Total: -52.55 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -1.38 Total: -21.00 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.32 Total: 1.80 kcal Total: -65.71 4.24 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.705 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds