Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20681 * 2 1 4 4 C 1.38422 * 114.92604 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.54544 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.28033 * 217.11609 * 5 4 3 7 7 C 1.54950 * 110.31190 * 95.02472 * 5 4 3 8 8 C 1.55299 * 100.94291 * 204.64585 * 7 5 4 9 9 C 1.54381 * 102.25825 * 34.13183 * 8 7 5 10 10 C 1.53004 * 109.82935 * 98.15598 * 9 8 7 11 11 C 1.50696 * 109.83142 * 219.13201 * 9 8 7 12 12 H 1.07997 * 120.00070 * 359.97438 * 11 9 8 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 9 8 14 14 N 1.31518 * 119.99942 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 120.00079 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46767 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46944 * 120.00263 * 15 13 11 18 18 H 1.48492 * 109.47112 * 240.00432 * 15 13 11 19 19 O 1.43237 * 107.58599 * 338.64531 * 9 8 7 20 20 C 1.33390 * 114.91870 * 0.02562 * 4 3 2 21 21 C 1.50702 * 125.20683 * 180.02562 * 20 4 3 22 22 S 1.75889 * 125.19988 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46957 * 300.01258 * 1 2 3 25 25 H 1.09001 * 109.46459 * 60.01450 * 1 2 3 26 26 H 1.08006 * 122.53711 * 359.94933 * 3 2 1 27 27 H 1.09007 * 111.12309 * 322.56511 * 7 5 4 28 28 H 1.09001 * 111.12230 * 86.67791 * 7 5 4 29 29 H 1.08998 * 110.84930 * 152.32811 * 8 7 5 30 30 H 1.08998 * 110.84560 * 275.93746 * 8 7 5 31 31 H 1.09000 * 109.46816 * 60.00279 * 10 9 8 32 32 H 1.08995 * 109.46800 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.46948 * 300.00529 * 10 9 8 34 34 H 0.97000 * 119.99831 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47583 * 179.97438 * 21 20 4 36 36 H 1.09001 * 109.46981 * 300.00479 * 21 20 4 37 37 H 1.09007 * 109.46587 * 59.99916 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9480 0.0001 6 1 5.5173 1.6705 -0.6164 7 6 5.1210 2.2570 1.4476 8 6 5.5964 3.7279 1.2985 9 6 4.6149 4.2844 0.2448 10 6 3.4850 5.0471 0.9396 11 6 5.3465 5.2013 -0.7013 12 1 6.4043 5.3769 -0.5733 13 6 4.6652 5.8159 -1.7305 14 7 3.3768 5.6023 -1.8861 15 14 5.5718 6.9529 -2.9030 16 1 7.0033 7.0251 -2.5146 17 1 5.4608 6.4271 -4.2873 18 1 4.9721 8.3099 -2.8393 19 8 4.0771 3.1701 -0.4768 20 6 3.9751 -0.4478 0.0005 21 6 5.3861 -0.9773 0.0016 22 16 2.5209 -1.4373 0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8898 25 1 -0.3632 0.5136 -0.8902 26 1 1.8670 2.0894 -0.0008 27 1 4.2888 2.1821 2.1477 28 1 5.9426 1.6062 1.7467 29 1 5.4982 4.2648 2.2420 30 1 6.6224 3.7688 0.9329 31 1 3.9039 5.8736 1.5136 32 1 2.7957 5.4368 0.1907 33 1 2.9505 4.3736 1.6096 34 1 2.8976 6.0344 -2.6103 35 1 5.3653 -2.0670 0.0017 36 1 5.9075 -0.6235 -0.8878 37 1 5.9059 -0.6240 0.8922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309497717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = -25.994975 kcal Electronic energy + Delta-G solvation = -18664.558395 eV Core-core repulsion = 15919.073176 eV Total energy + Delta-G solvation = -2745.485219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08015 -37.09470 -33.25420 -32.54631 -30.99069 -29.70563 -28.99113 -25.61383 -25.14095 -23.74680 -21.91560 -20.44474 -19.37416 -17.75733 -16.69683 -16.42332 -15.27831 -14.81133 -14.28337 -14.01245 -13.61607 -13.17587 -13.16521 -13.01561 -12.59879 -12.40766 -12.10334 -11.86003 -11.81200 -11.38865 -11.24627 -11.02959 -10.92512 -10.76383 -10.63519 -10.50223 -10.36662 -10.08823 -9.90589 -9.49236 -9.07828 -8.45908 -8.03872 -7.99462 -7.70229 -5.92148 -4.08468 1.35948 1.95772 2.29081 3.18037 3.30827 3.39276 3.42218 4.44567 5.00157 5.11653 5.24901 5.41450 5.44590 5.51113 5.56296 5.67671 5.70779 5.72532 5.84635 6.02239 6.04489 6.19448 6.30938 6.35477 6.37878 6.55068 6.66278 6.70681 6.84179 6.94191 6.96209 7.06478 7.15783 7.45437 7.81716 8.13050 8.40012 8.67128 9.08249 9.62933 11.09496 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.005994 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.016249 B = 4670.550720 C = 5005.593651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.193 4.193 3 C -0.099 4.099 4 C -0.080 4.080 5 C 0.135 3.865 6 H 0.062 0.938 7 C -0.143 4.143 8 C -0.141 4.141 9 C 0.228 3.772 10 C -0.138 4.138 11 C -0.533 4.533 12 H 0.058 0.942 13 C 0.081 3.919 14 N -0.859 5.859 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.343 6.343 20 C -0.188 4.188 21 C -0.076 4.076 22 S 0.052 5.948 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.149 0.851 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.011 0.989 34 H 0.258 0.742 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 -11.578 5.264 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.309 4.309 3 C -0.128 4.128 4 C -0.092 4.092 5 C 0.073 3.927 6 H 0.079 0.921 7 C -0.181 4.181 8 C -0.179 4.179 9 C 0.191 3.809 10 C -0.196 4.196 11 C -0.571 4.571 12 H 0.076 0.924 13 C -0.124 4.124 14 N -0.496 5.496 15 Si 0.714 3.286 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.263 6.263 20 C -0.305 4.305 21 C -0.134 4.134 22 S 0.316 5.684 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.166 0.834 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.036 -13.080 4.995 14.148 hybrid contribution 0.878 2.073 -0.578 2.325 sum -1.158 -11.006 4.417 11.916 Atomic orbital electron populations 1.20249 0.88264 1.01989 1.02896 1.24270 0.99409 0.95073 1.12147 1.20040 0.92379 0.99775 1.00623 1.19043 0.95295 0.93524 1.01341 1.21228 0.91794 0.86286 0.93370 0.92059 1.23171 1.00220 0.97679 0.97054 1.23230 1.00800 0.93797 1.00040 1.19654 0.89074 0.84282 0.87911 1.21975 1.00361 0.98110 0.99172 1.21317 0.95126 1.26815 1.13843 0.92353 1.24994 0.94717 0.95596 0.97081 1.69957 1.07400 1.41781 1.30460 0.86655 0.80149 0.80606 0.81212 1.19788 1.20976 1.20994 1.88767 1.65284 1.11799 1.60422 1.23996 0.98375 0.95542 1.12567 1.20258 0.90219 1.00059 1.02909 1.83796 0.97402 1.10727 1.76449 0.92101 0.90913 0.90730 0.83382 0.91594 0.91911 0.92125 0.91704 0.94633 0.89152 0.96987 0.93191 0.92048 0.90675 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.38 36.01 0.37 -0.57 16 2 C -0.19 -3.07 6.51 -36.00 -0.23 -3.30 16 3 C -0.10 -1.85 9.39 -41.21 -0.39 -2.24 16 4 C -0.08 -1.51 5.01 -106.25 -0.53 -2.04 16 5 C 0.13 2.78 3.38 -26.86 -0.09 2.69 16 6 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 7 C -0.14 -2.63 6.56 -24.48 -0.16 -2.79 16 8 C -0.14 -2.91 6.07 -24.79 -0.15 -3.06 16 9 C 0.23 5.67 0.82 -91.05 -0.07 5.59 16 10 C -0.14 -3.36 8.51 37.16 0.32 -3.05 16 11 C -0.53 -14.62 8.22 -34.44 -0.28 -14.91 16 12 H 0.06 1.58 7.52 -52.49 -0.39 1.18 16 13 C 0.08 2.25 5.26 -17.82 -0.09 2.16 16 14 N -0.86 -24.63 10.92 55.43 0.61 -24.03 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 O -0.34 -8.73 9.01 -35.23 -0.32 -9.05 16 20 C -0.19 -3.04 6.51 -36.00 -0.23 -3.27 16 21 C -0.08 -0.98 9.57 36.01 0.34 -0.64 16 22 S 0.05 0.76 23.31 -107.50 -2.51 -1.74 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.15 3.06 7.66 -52.48 -0.40 2.66 16 27 H 0.07 1.20 8.05 -51.92 -0.42 0.78 16 28 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 29 H 0.06 1.16 7.82 -51.93 -0.41 0.76 16 30 H 0.06 1.33 7.65 -51.93 -0.40 0.93 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 2.43 6.01 -51.93 -0.31 2.12 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 37 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -29.54 314.03 -9.37 -38.91 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.66 Total: 0.39 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -1.21 Total: -25.44 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.61 Total: -24.03 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.32 Total: -9.05 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.54 -9.37 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.913 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds