Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33383 * 125.20681 * 2 1 4 4 C 1.38422 * 114.92604 * 179.97438 * 3 2 1 5 5 C 1.50694 * 122.54544 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.28033 * 217.11609 * 5 4 3 7 7 C 1.54950 * 110.31190 * 95.02472 * 5 4 3 8 8 C 1.55299 * 100.94291 * 204.64585 * 7 5 4 9 9 C 1.54381 * 102.25825 * 34.13183 * 8 7 5 10 10 C 1.53004 * 109.82935 * 98.15598 * 9 8 7 11 11 C 1.50696 * 109.83142 * 219.13201 * 9 8 7 12 12 H 1.07997 * 120.00070 * 359.97438 * 11 9 8 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 9 8 14 14 N 1.31518 * 119.99942 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 120.00079 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46767 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46944 * 120.00263 * 15 13 11 18 18 H 1.48492 * 109.47112 * 240.00432 * 15 13 11 19 19 O 1.43237 * 107.58599 * 338.64531 * 9 8 7 20 20 C 1.33390 * 114.91870 * 0.02562 * 4 3 2 21 21 C 1.50702 * 125.20683 * 180.02562 * 20 4 3 22 22 S 1.75889 * 125.19988 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46957 * 300.01258 * 1 2 3 25 25 H 1.09001 * 109.46459 * 60.01450 * 1 2 3 26 26 H 1.08006 * 122.53711 * 359.94933 * 3 2 1 27 27 H 1.09007 * 111.12309 * 322.56511 * 7 5 4 28 28 H 1.09001 * 111.12230 * 86.67791 * 7 5 4 29 29 H 1.08998 * 110.84930 * 152.32811 * 8 7 5 30 30 H 1.08998 * 110.84560 * 275.93746 * 8 7 5 31 31 H 1.09000 * 109.46816 * 60.00279 * 10 9 8 32 32 H 1.08995 * 109.46800 * 180.02562 * 10 9 8 33 33 H 1.08997 * 109.46948 * 300.00529 * 10 9 8 34 34 H 0.97000 * 119.99831 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47583 * 179.97438 * 21 20 4 36 36 H 1.09001 * 109.46981 * 300.00479 * 21 20 4 37 37 H 1.09007 * 109.46587 * 59.99916 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9480 0.0001 6 1 5.5173 1.6705 -0.6164 7 6 5.1210 2.2570 1.4476 8 6 5.5964 3.7279 1.2985 9 6 4.6149 4.2844 0.2448 10 6 3.4850 5.0471 0.9396 11 6 5.3465 5.2013 -0.7013 12 1 6.4043 5.3769 -0.5733 13 6 4.6652 5.8159 -1.7305 14 7 3.3768 5.6023 -1.8861 15 14 5.5718 6.9529 -2.9030 16 1 7.0033 7.0251 -2.5146 17 1 5.4608 6.4271 -4.2873 18 1 4.9721 8.3099 -2.8393 19 8 4.0771 3.1701 -0.4768 20 6 3.9751 -0.4478 0.0005 21 6 5.3861 -0.9773 0.0016 22 16 2.5209 -1.4373 0.0006 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8898 25 1 -0.3632 0.5136 -0.8902 26 1 1.8670 2.0894 -0.0008 27 1 4.2888 2.1821 2.1477 28 1 5.9426 1.6062 1.7467 29 1 5.4982 4.2648 2.2420 30 1 6.6224 3.7688 0.9329 31 1 3.9039 5.8736 1.5136 32 1 2.7957 5.4368 0.1907 33 1 2.9505 4.3736 1.6096 34 1 2.8976 6.0344 -2.6103 35 1 5.3653 -2.0670 0.0017 36 1 5.9075 -0.6235 -0.8878 37 1 5.9059 -0.6240 0.8922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309497717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = -41.307657 kcal Electronic energy + Delta-G solvation = -18665.222403 eV Core-core repulsion = 15919.073176 eV Total energy + Delta-G solvation = -2746.149227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64895 -38.59507 -34.96791 -34.04078 -32.75078 -31.35715 -30.19319 -27.40049 -26.96383 -25.06897 -23.38608 -21.87801 -21.22797 -19.11236 -18.42412 -17.97597 -16.85372 -16.61179 -15.95051 -15.44363 -15.14164 -14.67594 -14.34930 -14.17429 -13.87148 -13.83286 -13.75371 -13.58331 -13.09992 -13.04000 -12.84489 -12.64836 -12.55318 -12.33377 -12.26143 -12.10635 -11.96712 -11.83216 -11.45511 -11.24385 -10.93324 -10.55286 -9.77256 -9.25561 -9.07624 -8.00250 -6.23752 0.08690 0.74742 1.01691 1.39516 1.41850 1.52261 1.80223 2.43942 3.13883 3.64637 3.88194 3.99611 4.03155 4.22229 4.31346 4.43674 4.49084 4.63591 4.69605 4.72832 4.78142 4.80111 4.94817 4.95196 4.98323 5.05614 5.11403 5.16780 5.22182 5.28204 5.37000 5.48463 5.57675 5.67926 5.80141 6.13590 6.36657 6.70062 7.17346 7.52528 8.99942 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024153 B = 0.005994 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.016249 B = 4670.550720 C = 5005.593651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.193 4.193 3 C -0.133 4.133 4 C -0.110 4.110 5 C 0.129 3.871 6 H 0.055 0.945 7 C -0.127 4.127 8 C -0.137 4.137 9 C 0.213 3.787 10 C -0.130 4.130 11 C -0.551 4.551 12 H 0.055 0.945 13 C 0.032 3.968 14 N -0.889 5.889 15 Si 0.947 3.053 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.278 1.278 19 O -0.377 6.377 20 C -0.189 4.189 21 C -0.078 4.078 22 S 0.114 5.886 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.023 0.977 34 H 0.256 0.744 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -13.642 5.962 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.310 4.310 3 C -0.163 4.163 4 C -0.122 4.122 5 C 0.068 3.932 6 H 0.072 0.928 7 C -0.165 4.165 8 C -0.174 4.174 9 C 0.176 3.824 10 C -0.188 4.188 11 C -0.589 4.589 12 H 0.073 0.927 13 C -0.170 4.170 14 N -0.526 5.526 15 Si 0.773 3.227 16 H -0.190 1.190 17 H -0.212 1.212 18 H -0.204 1.204 19 O -0.297 6.297 20 C -0.306 4.306 21 C -0.137 4.137 22 S 0.379 5.621 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.326 -15.146 5.703 16.239 hybrid contribution 0.623 2.610 -0.794 2.798 sum -0.703 -12.536 4.909 13.481 Atomic orbital electron populations 1.20377 0.86112 1.03716 1.03362 1.24703 1.01155 0.95278 1.09822 1.19870 0.93178 0.99211 1.04061 1.18913 0.94809 0.94087 1.04401 1.21343 0.92138 0.85291 0.94397 0.92761 1.23088 1.01153 0.96535 0.95708 1.23131 0.99637 0.95379 0.99293 1.19740 0.89751 0.84398 0.88551 1.21841 0.99975 0.98446 0.98494 1.21712 0.95175 1.27481 1.14539 0.92699 1.25736 0.95420 0.97136 0.98737 1.70118 1.08684 1.42872 1.30967 0.85697 0.79315 0.78839 0.78845 1.18977 1.21203 1.20380 1.88694 1.65985 1.13530 1.61507 1.24431 1.00693 0.95071 1.10369 1.20399 0.88267 1.01574 1.03426 1.83541 0.95343 1.08443 1.74812 0.89656 0.90006 0.90723 0.86759 0.91544 0.88540 0.90729 0.91735 0.94042 0.92294 0.95750 0.93460 0.89607 0.90781 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 10.38 71.24 0.74 -1.07 16 2 C -0.19 -5.94 6.51 24.59 0.16 -5.78 16 3 C -0.13 -5.13 9.39 21.21 0.20 -4.93 16 4 C -0.11 -4.13 5.01 -20.92 -0.10 -4.24 16 5 C 0.13 5.35 3.38 30.51 0.10 5.45 16 6 H 0.05 2.26 7.66 -2.39 -0.02 2.25 16 7 C -0.13 -4.50 6.56 32.05 0.21 -4.29 16 8 C -0.14 -5.56 6.07 31.85 0.19 -5.37 16 9 C 0.21 10.80 0.82 -11.07 -0.01 10.79 16 10 C -0.13 -6.49 8.51 71.98 0.61 -5.87 16 11 C -0.55 -30.80 8.22 25.60 0.21 -30.59 16 12 H 0.05 3.00 7.52 -2.91 -0.02 2.98 16 13 C 0.03 1.80 5.26 84.65 0.45 2.24 16 14 N -0.89 -52.79 10.92 21.45 0.23 -52.55 16 15 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 O -0.38 -19.83 9.01 -148.98 -1.34 -21.17 16 20 C -0.19 -5.72 6.51 24.59 0.16 -5.56 16 21 C -0.08 -1.80 9.57 71.24 0.68 -1.12 16 22 S 0.11 3.01 23.31 -56.49 -1.32 1.70 16 23 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.77 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.11 5.08 7.66 -2.91 -0.02 5.05 16 27 H 0.07 2.34 8.05 -2.38 -0.02 2.32 16 28 H 0.10 2.74 8.10 -2.39 -0.02 2.72 16 29 H 0.07 2.77 7.82 -2.39 -0.02 2.76 16 30 H 0.06 2.59 7.65 -2.39 -0.02 2.57 16 31 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 3.31 6.01 -2.39 -0.01 3.30 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.75 8.01 -2.39 -0.02 1.73 16 37 H 0.08 1.77 8.10 -2.38 -0.02 1.75 16 Total: -1.00 -65.36 314.03 4.25 -61.11 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.04 Total: 14.87 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 3.60 Total: -50.35 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: 0.23 Total: -52.55 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -1.34 Total: -21.17 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.32 Total: 1.70 kcal Total: -65.36 4.25 -61.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.801 kcal (2) G-P(sol) polarization free energy of solvation -65.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds