Wall clock time and date at job start Mon Mar 30 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47518 * 2 1 4 4 C 1.53005 * 109.46845 * 240.00253 * 2 1 3 5 5 O 1.42894 * 109.47394 * 65.60755 * 4 2 1 6 6 S 1.81406 * 109.47291 * 120.00346 * 2 1 3 7 7 C 1.81401 * 102.99983 * 61.88373 * 6 2 1 8 8 H 1.09003 * 109.47066 * 315.22687 * 7 6 2 9 9 C 1.50698 * 109.46837 * 75.22333 * 7 6 2 10 10 H 1.08001 * 119.99994 * 35.10943 * 9 7 6 11 11 C 1.37882 * 120.00023 * 215.10329 * 9 7 6 12 12 N 1.31518 * 119.99999 * 179.25171 * 11 9 7 13 13 Si 1.86798 * 120.00062 * 359.25227 * 11 9 7 14 14 H 1.48494 * 109.47142 * 92.52654 * 13 11 9 15 15 H 1.48501 * 109.47289 * 212.52992 * 13 11 9 16 16 H 1.48508 * 109.46982 * 332.52724 * 13 11 9 17 17 C 1.50691 * 109.47262 * 195.22538 * 7 6 2 18 18 C 1.38243 * 120.00050 * 296.28036 * 17 7 6 19 19 C 1.38236 * 119.99700 * 179.80845 * 18 17 7 20 20 C 1.38236 * 120.00241 * 0.39443 * 19 18 17 21 21 C 1.38234 * 119.99899 * 359.85868 * 20 19 18 22 22 C 1.38232 * 120.00051 * 359.95493 * 21 20 19 23 23 H 1.08997 * 109.46673 * 304.01487 * 1 2 3 24 24 H 1.08999 * 109.47389 * 64.01024 * 1 2 3 25 25 H 1.09001 * 109.47244 * 184.01912 * 1 2 3 26 26 H 1.09003 * 109.48052 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47642 * 300.00390 * 3 2 1 28 28 H 1.09005 * 109.47387 * 60.00027 * 3 2 1 29 29 H 1.08997 * 109.46786 * 185.60949 * 4 2 1 30 30 H 1.08999 * 109.47136 * 305.60557 * 4 2 1 31 31 H 0.96700 * 114.00477 * 179.97438 * 5 4 2 32 32 H 0.96996 * 119.99652 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.99360 * 359.97438 * 18 17 7 34 34 H 1.08001 * 119.99303 * 180.22976 * 19 18 17 35 35 H 1.07996 * 119.99788 * 179.83724 * 20 19 18 36 36 H 1.07999 * 119.99429 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99850 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.6742 0.0241 -2.4123 6 16 2.1347 -0.8552 1.4811 7 6 1.4854 -2.5365 1.2752 8 1 0.4436 -2.4874 0.9584 9 6 2.2941 -3.2629 0.2315 10 1 3.3546 -3.0776 0.1445 11 6 1.6803 -4.1642 -0.6123 12 7 2.3833 -4.7871 -1.5329 13 14 -0.1498 -4.5003 -0.4481 14 1 -0.9023 -3.5980 -1.3562 15 1 -0.4283 -5.9130 -0.8115 16 1 -0.5738 -4.2573 0.9543 17 6 1.5777 -3.2746 2.5857 18 6 2.8138 -3.5304 3.1494 19 6 2.8981 -4.2041 4.3536 20 6 1.7469 -4.6291 4.9900 21 6 0.5112 -4.3779 4.4237 22 6 0.4266 -3.7009 3.2215 23 1 -0.3632 0.5749 0.8518 24 1 -0.3634 0.4503 -0.9237 25 1 -0.3634 -1.0251 0.0720 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1253 -0.8090 -1.2005 30 1 1.5969 -1.7158 -1.3010 31 1 1.9660 -0.3751 -3.2433 32 1 1.9513 -5.4209 -2.1267 33 1 3.7133 -3.2016 2.6503 34 1 3.8636 -4.4006 4.7958 35 1 1.8130 -5.1577 5.9294 36 1 -0.3882 -4.7104 4.9207 37 1 -0.5389 -3.5043 2.7792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311202339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:30 Heat of formation + Delta-G solvation = -39.981706 kcal Electronic energy + Delta-G solvation = -18640.921431 eV Core-core repulsion = 15894.829702 eV Total energy + Delta-G solvation = -2746.091729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.56776 -37.10165 -33.92130 -33.52254 -31.59376 -30.25971 -27.89319 -26.78666 -25.49268 -23.17921 -21.96748 -20.56282 -19.66437 -17.19525 -16.92396 -16.17870 -15.19392 -14.87607 -14.51639 -14.41473 -14.25062 -13.84218 -13.38747 -12.86726 -12.72401 -12.57715 -12.21508 -12.13723 -12.05244 -11.65250 -11.59830 -11.08763 -10.81277 -10.68735 -10.54589 -10.44804 -10.19581 -10.00004 -9.57494 -9.27419 -8.95600 -8.74173 -8.25644 -7.87806 -6.78077 -6.37947 -4.34734 1.90834 2.05985 2.73291 3.07231 3.18792 3.21459 3.54970 4.15288 4.57505 4.87819 4.99166 5.31150 5.46788 5.48600 5.51807 5.63786 5.73984 5.85627 6.05408 6.08641 6.17411 6.18405 6.22910 6.32420 6.33623 6.44686 6.52610 6.62518 6.67128 6.75216 6.81251 7.07455 7.14096 7.19384 7.44816 7.67698 8.14586 8.19282 8.68599 9.18116 10.70760 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.009216 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.206182 B = 3037.429420 C = 3840.359784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.013 4.013 3 C -0.118 4.118 4 C 0.081 3.919 5 O -0.585 6.585 6 S -0.295 6.295 7 C 0.097 3.903 8 H 0.058 0.942 9 C -0.495 4.495 10 H 0.091 0.909 11 C 0.084 3.916 12 N -0.876 5.876 13 Si 0.849 3.151 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.247 1.247 17 C -0.028 4.028 18 C -0.090 4.090 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.127 4.127 22 C -0.126 4.126 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.374 0.626 32 H 0.269 0.731 33 H 0.124 0.876 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 4.780 4.836 7.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.176 4.176 4 C 0.002 3.998 5 O -0.391 6.391 6 S -0.060 6.060 7 C -0.030 4.030 8 H 0.076 0.924 9 C -0.536 4.536 10 H 0.109 0.891 11 C -0.123 4.123 12 N -0.512 5.512 13 Si 0.675 3.325 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.171 1.171 17 C -0.031 4.031 18 C -0.109 4.109 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.145 4.145 22 C -0.146 4.146 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.220 0.780 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.467 5.532 5.979 8.511 hybrid contribution -1.393 -1.447 -1.425 2.463 sum -3.859 4.085 4.554 7.233 Atomic orbital electron populations 1.22028 0.93729 1.01966 1.01828 1.22360 0.97737 0.97577 0.94643 1.21542 1.01091 0.93361 1.01634 1.22867 0.99164 0.94982 0.82748 1.86307 1.82433 1.53626 1.16709 1.86260 1.75880 1.13937 1.29913 1.20149 0.99070 0.89734 0.94029 0.92403 1.21055 0.97141 1.22783 1.12588 0.89148 1.25020 0.97823 0.94961 0.94518 1.69858 1.36291 1.26464 1.18586 0.87243 0.86357 0.78568 0.80289 1.19803 1.20789 1.17145 1.20026 0.92800 0.96212 0.94041 1.20989 0.97912 0.97528 0.94461 1.21053 0.97788 0.99569 0.96125 1.20902 0.92877 1.02219 1.00034 1.20930 0.97169 1.00264 0.96167 1.21063 0.97983 1.00229 0.95317 0.92342 0.91769 0.92827 0.92422 0.91212 0.92783 0.92955 0.89810 0.78025 0.92069 0.85832 0.86930 0.87194 0.87122 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.35 37.16 0.31 -2.12 16 2 C -0.01 -0.25 0.79 -90.62 -0.07 -0.32 16 3 C -0.12 -1.93 8.28 37.15 0.31 -1.62 16 4 C 0.08 1.61 4.92 37.16 0.18 1.79 16 5 O -0.58 -10.28 12.25 -35.23 -0.43 -10.71 16 6 S -0.29 -6.04 19.84 -107.50 -2.13 -8.17 16 7 C 0.10 2.15 1.61 -29.04 -0.05 2.10 16 8 H 0.06 1.30 3.34 -51.92 -0.17 1.13 16 9 C -0.50 -12.33 5.74 -34.44 -0.20 -12.53 16 10 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 11 C 0.08 2.16 4.79 -17.82 -0.09 2.08 16 12 N -0.88 -24.12 13.96 55.43 0.77 -23.34 16 13 Si 0.85 19.50 27.01 -169.99 -4.59 14.90 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.25 -5.36 4.43 56.52 0.25 -5.11 16 17 C -0.03 -0.59 4.68 -104.62 -0.49 -1.08 16 18 C -0.09 -1.81 8.94 -39.58 -0.35 -2.17 16 19 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 20 C -0.14 -2.31 10.05 -39.58 -0.40 -2.70 16 21 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 22 C -0.13 -2.47 8.74 -39.58 -0.35 -2.81 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.09 7.74 -51.93 -0.40 0.69 16 25 H 0.05 1.02 6.28 -51.93 -0.33 0.70 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.09 7.55 -51.93 -0.39 0.70 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.90 5.37 -51.93 -0.28 1.63 16 31 H 0.37 5.23 9.12 45.56 0.42 5.65 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.12 2.56 7.96 -52.49 -0.42 2.15 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 2.13 6.80 -52.49 -0.36 1.77 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -27.34 305.93 -8.36 -35.70 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -4.60 Total: 11.56 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -1.98 Total: -24.55 kcal Atomic # 7 Polarization: -24.12 SS G_CDS: 0.77 Total: -23.34 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.43 Total: -10.71 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.59 Total: 14.90 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.13 Total: -8.17 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.34 -8.36 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311202339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.283 kcal (2) G-P(sol) polarization free energy of solvation -27.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds