Wall clock time and date at job start Mon Mar 30 2020 06:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47518 * 2 1 4 4 C 1.53005 * 109.46845 * 240.00253 * 2 1 3 5 5 O 1.42894 * 109.47394 * 65.60755 * 4 2 1 6 6 S 1.81406 * 109.47291 * 120.00346 * 2 1 3 7 7 C 1.81401 * 102.99983 * 61.88373 * 6 2 1 8 8 H 1.09003 * 109.47066 * 315.22687 * 7 6 2 9 9 C 1.50698 * 109.46837 * 75.22333 * 7 6 2 10 10 H 1.08001 * 119.99994 * 35.10943 * 9 7 6 11 11 C 1.37882 * 120.00023 * 215.10329 * 9 7 6 12 12 N 1.31518 * 119.99999 * 179.25171 * 11 9 7 13 13 Si 1.86798 * 120.00062 * 359.25227 * 11 9 7 14 14 H 1.48494 * 109.47142 * 92.52654 * 13 11 9 15 15 H 1.48501 * 109.47289 * 212.52992 * 13 11 9 16 16 H 1.48508 * 109.46982 * 332.52724 * 13 11 9 17 17 C 1.50691 * 109.47262 * 195.22538 * 7 6 2 18 18 C 1.38243 * 120.00050 * 296.28036 * 17 7 6 19 19 C 1.38236 * 119.99700 * 179.80845 * 18 17 7 20 20 C 1.38236 * 120.00241 * 0.39443 * 19 18 17 21 21 C 1.38234 * 119.99899 * 359.85868 * 20 19 18 22 22 C 1.38232 * 120.00051 * 359.95493 * 21 20 19 23 23 H 1.08997 * 109.46673 * 304.01487 * 1 2 3 24 24 H 1.08999 * 109.47389 * 64.01024 * 1 2 3 25 25 H 1.09001 * 109.47244 * 184.01912 * 1 2 3 26 26 H 1.09003 * 109.48052 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.47642 * 300.00390 * 3 2 1 28 28 H 1.09005 * 109.47387 * 60.00027 * 3 2 1 29 29 H 1.08997 * 109.46786 * 185.60949 * 4 2 1 30 30 H 1.08999 * 109.47136 * 305.60557 * 4 2 1 31 31 H 0.96700 * 114.00477 * 179.97438 * 5 4 2 32 32 H 0.96996 * 119.99652 * 180.02562 * 12 11 9 33 33 H 1.07998 * 119.99360 * 359.97438 * 18 17 7 34 34 H 1.08001 * 119.99303 * 180.22976 * 19 18 17 35 35 H 1.07996 * 119.99788 * 179.83724 * 20 19 18 36 36 H 1.07999 * 119.99429 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.99850 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 1.6742 0.0241 -2.4123 6 16 2.1347 -0.8552 1.4811 7 6 1.4854 -2.5365 1.2752 8 1 0.4436 -2.4874 0.9584 9 6 2.2941 -3.2629 0.2315 10 1 3.3546 -3.0776 0.1445 11 6 1.6803 -4.1642 -0.6123 12 7 2.3833 -4.7871 -1.5329 13 14 -0.1498 -4.5003 -0.4481 14 1 -0.9023 -3.5980 -1.3562 15 1 -0.4283 -5.9130 -0.8115 16 1 -0.5738 -4.2573 0.9543 17 6 1.5777 -3.2746 2.5857 18 6 2.8138 -3.5304 3.1494 19 6 2.8981 -4.2041 4.3536 20 6 1.7469 -4.6291 4.9900 21 6 0.5112 -4.3779 4.4237 22 6 0.4266 -3.7009 3.2215 23 1 -0.3632 0.5749 0.8518 24 1 -0.3634 0.4503 -0.9237 25 1 -0.3634 -1.0251 0.0720 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 3.1253 -0.8090 -1.2005 30 1 1.5969 -1.7158 -1.3010 31 1 1.9660 -0.3751 -3.2433 32 1 1.9513 -5.4209 -2.1267 33 1 3.7133 -3.2016 2.6503 34 1 3.8636 -4.4006 4.7958 35 1 1.8130 -5.1577 5.9294 36 1 -0.3882 -4.7104 4.9207 37 1 -0.5389 -3.5043 2.7792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000311202339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:29 Heat of formation + Delta-G solvation = -56.038872 kcal Electronic energy + Delta-G solvation = -18641.617722 eV Core-core repulsion = 15894.829702 eV Total energy + Delta-G solvation = -2746.788020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01021 -38.61218 -35.66222 -35.03167 -33.33414 -31.66951 -29.52414 -28.21748 -27.03506 -24.95521 -23.39671 -22.09413 -21.17534 -19.07477 -18.49240 -17.58313 -16.98269 -16.36945 -16.04718 -16.03235 -15.77576 -15.30182 -15.03406 -14.55047 -14.18736 -14.08281 -13.70073 -13.61437 -13.58353 -13.33753 -12.94915 -12.86309 -12.30191 -12.24172 -12.04602 -12.02368 -11.71341 -11.69332 -11.34052 -10.93523 -10.69766 -10.53837 -9.67702 -9.35991 -8.48347 -8.34099 -6.36021 0.43870 0.63258 1.18959 1.23641 1.30996 1.37218 1.89072 2.24646 3.00906 3.12695 3.43684 3.83134 4.03496 4.09225 4.17129 4.26885 4.29821 4.39013 4.48014 4.67563 4.72780 4.78513 4.80419 4.87291 4.90755 4.91913 5.08852 5.16055 5.22155 5.28953 5.30362 5.36906 5.68761 5.72475 5.90823 6.16680 6.27428 6.61809 6.83353 7.19056 8.75390 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.009216 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.206182 B = 3037.429420 C = 3840.359784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.016 4.016 3 C -0.111 4.111 4 C 0.093 3.907 5 O -0.580 6.580 6 S -0.297 6.297 7 C 0.103 3.897 8 H 0.055 0.945 9 C -0.481 4.481 10 H 0.048 0.952 11 C 0.040 3.960 12 N -0.925 5.925 13 Si 0.895 3.105 14 H -0.269 1.269 15 H -0.288 1.288 16 H -0.226 1.226 17 C -0.057 4.057 18 C -0.114 4.114 19 C -0.127 4.127 20 C -0.132 4.132 21 C -0.123 4.123 22 C -0.143 4.143 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.389 0.611 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 5.309 7.029 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.169 4.169 4 C 0.014 3.986 5 O -0.388 6.388 6 S -0.063 6.063 7 C -0.025 4.025 8 H 0.073 0.927 9 C -0.521 4.521 10 H 0.066 0.934 11 C -0.162 4.162 12 N -0.563 5.563 13 Si 0.720 3.280 14 H -0.194 1.194 15 H -0.214 1.214 16 H -0.149 1.149 17 C -0.060 4.060 18 C -0.134 4.134 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.162 4.162 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.238 0.762 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.145 6.070 8.175 10.994 hybrid contribution -0.778 -1.541 -2.044 2.675 sum -4.923 4.529 6.131 9.074 Atomic orbital electron populations 1.21997 0.92562 1.01330 1.03226 1.22524 0.98702 0.98511 0.92860 1.21505 1.00887 0.91569 1.02945 1.22515 0.97640 0.94025 0.84424 1.86267 1.82330 1.53224 1.16938 1.86182 1.76457 1.12661 1.30995 1.20017 0.98051 0.90291 0.94126 0.92685 1.20915 0.95331 1.22569 1.13335 0.93367 1.25581 1.01322 0.94941 0.94322 1.69978 1.37924 1.28150 1.20257 0.86504 0.82229 0.77895 0.81411 1.19396 1.21429 1.14913 1.20002 0.94043 0.97594 0.94314 1.20980 0.96920 0.99377 0.96097 1.21382 0.99879 0.98329 0.94900 1.21383 0.91888 1.00774 1.00982 1.21361 0.99045 0.98634 0.95000 1.21236 0.97366 1.00998 0.96617 0.90404 0.90757 0.94532 0.92771 0.90048 0.91196 0.94921 0.92952 0.76203 0.92273 0.88010 0.84345 0.83126 0.83566 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.35 71.98 0.60 -3.89 16 2 C -0.02 -0.59 0.79 -10.79 -0.01 -0.60 16 3 C -0.11 -3.42 8.28 71.98 0.60 -2.82 16 4 C 0.09 3.78 4.92 71.98 0.35 4.13 16 5 O -0.58 -19.96 12.25 -148.98 -1.83 -21.79 16 6 S -0.30 -12.25 19.84 -56.49 -1.12 -13.37 16 7 C 0.10 4.61 1.61 29.10 0.05 4.66 16 8 H 0.06 2.48 3.34 -2.39 -0.01 2.47 16 9 C -0.48 -25.08 5.74 25.60 0.15 -24.93 16 10 H 0.05 2.86 8.06 -2.91 -0.02 2.84 16 11 C 0.04 2.16 4.79 84.66 0.41 2.57 16 12 N -0.92 -53.35 13.96 21.45 0.30 -53.05 16 13 Si 0.90 40.65 27.01 68.60 1.85 42.50 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.23 -9.39 4.43 99.48 0.44 -8.95 16 17 C -0.06 -2.40 4.68 -19.87 -0.09 -2.49 16 18 C -0.11 -4.63 8.94 22.27 0.20 -4.43 16 19 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 20 C -0.13 -3.74 10.05 22.27 0.22 -3.52 16 21 C -0.12 -3.70 10.05 22.27 0.22 -3.47 16 22 C -0.14 -5.28 8.74 22.27 0.19 -5.09 16 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.07 2.36 7.74 -2.39 -0.02 2.35 16 25 H 0.04 1.35 6.28 -2.39 -0.01 1.33 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 2.35 7.55 -2.39 -0.02 2.33 16 28 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 2.47 5.37 -2.39 -0.01 2.45 16 31 H 0.39 10.72 9.12 -74.06 -0.68 10.05 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.10 4.44 7.96 -2.91 -0.02 4.42 16 34 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.12 4.12 6.80 -2.91 -0.02 4.10 16 Total: -1.00 -61.10 305.93 2.44 -58.66 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.12 Total: 30.87 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 3.11 Total: -43.82 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.30 Total: -53.05 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -1.83 Total: -21.79 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.85 Total: 42.50 kcal Atomic # 16 Polarization: -12.25 SS G_CDS: -1.12 Total: -13.37 kcal Total: -61.10 2.44 -58.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311202339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.618 kcal (2) G-P(sol) polarization free energy of solvation -61.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds