Wall clock time and date at job start Mon Mar 30 2020 07:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47462 * 2 1 4 4 H 1.08997 * 109.47000 * 305.59611 * 3 2 1 5 5 C 1.50700 * 109.46845 * 65.59092 * 3 2 1 6 6 H 1.07996 * 120.00489 * 35.16467 * 5 3 2 7 7 C 1.37883 * 120.00010 * 215.15626 * 5 3 2 8 8 N 1.31514 * 119.99610 * 354.68773 * 7 5 3 9 9 Si 1.86796 * 120.00048 * 174.68624 * 7 5 3 10 10 H 1.48502 * 109.47258 * 60.00630 * 9 7 5 11 11 H 1.48500 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47296 * 300.00241 * 9 7 5 13 13 C 1.50693 * 109.47093 * 185.59200 * 3 2 1 14 14 O 1.21258 * 120.00318 * 269.99781 * 13 3 2 15 15 C 1.47185 * 120.00208 * 90.00191 * 13 3 2 16 16 C 1.39857 * 120.13204 * 359.72235 * 15 13 3 17 17 C 1.38136 * 119.90852 * 179.70212 * 16 15 13 18 18 F 1.35101 * 119.90578 * 180.32332 * 17 16 15 19 19 C 1.38534 * 120.18262 * 0.59651 * 17 16 15 20 20 C 1.38807 * 120.27236 * 359.68089 * 19 17 16 21 21 O 1.35911 * 119.95751 * 180.02562 * 20 19 17 22 22 C 1.42903 * 116.99978 * 359.97438 * 21 20 19 23 23 C 1.38441 * 120.08622 * 0.02562 * 20 19 17 24 24 H 1.09007 * 109.46862 * 294.78868 * 1 2 3 25 25 H 1.08996 * 109.46897 * 54.78089 * 1 2 3 26 26 H 1.08998 * 109.47427 * 174.78409 * 1 2 3 27 27 H 1.09005 * 109.46938 * 120.00179 * 2 1 3 28 28 H 1.08997 * 109.46935 * 239.99680 * 2 1 3 29 29 H 0.97006 * 119.99820 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.04393 * 359.97438 * 16 15 13 31 31 H 1.08003 * 119.86488 * 179.70197 * 19 17 16 32 32 H 1.08997 * 109.46737 * 299.99731 * 22 21 20 33 33 H 1.08994 * 109.46917 * 59.99857 * 22 21 20 34 34 H 1.08998 * 109.46650 * 180.02562 * 22 21 20 35 35 H 1.08010 * 120.09008 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 1.6540 2.1118 1.2938 6 1 1.6385 1.5436 2.2121 7 6 1.3207 3.4496 1.3053 8 7 1.4400 4.1664 0.2091 9 14 0.6997 4.2440 2.8777 10 1 1.7349 4.1233 3.9356 11 1 0.4125 5.6793 2.6272 12 1 -0.5424 3.5611 3.3203 13 6 3.5407 1.4446 -0.1384 14 8 4.2410 1.4114 0.8509 15 6 4.1565 1.4871 -1.4746 16 6 3.3515 1.5197 -2.6179 17 6 3.9343 1.5658 -3.8694 18 9 3.1567 1.6039 -4.9736 19 6 5.3139 1.5673 -3.9957 20 6 6.1200 1.5293 -2.8664 21 8 7.4727 1.5316 -2.9977 22 6 7.9954 1.5736 -4.3270 23 6 5.5478 1.4891 -1.6064 24 1 -0.3633 0.4309 0.9330 25 1 -0.3633 0.5926 -0.8395 26 1 -0.3634 -1.0234 -0.0934 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.2052 5.1075 0.2170 30 1 2.2758 1.5133 -2.5221 31 1 5.7641 1.5986 -4.9770 32 1 7.6488 0.7014 -4.8814 33 1 7.6513 2.4805 -4.8242 34 1 9.0847 1.5703 -4.2893 35 1 6.1750 1.4591 -0.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312415362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:27 Heat of formation + Delta-G solvation = -106.774137 kcal Electronic energy + Delta-G solvation = -20025.590797 eV Core-core repulsion = 16710.389554 eV Total energy + Delta-G solvation = -3315.201242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.72837 -40.05414 -38.56761 -36.51335 -34.37743 -31.90195 -30.67818 -30.21518 -27.48386 -27.32529 -24.67420 -23.06414 -22.30282 -20.69385 -19.27056 -17.58734 -16.90285 -16.59823 -15.95994 -15.91373 -15.42901 -15.24700 -14.90352 -14.57254 -14.34045 -13.74370 -13.47517 -13.36510 -12.80663 -12.42609 -12.19167 -12.08006 -11.58570 -11.50191 -11.25685 -11.13626 -10.99045 -10.85215 -10.79611 -10.45210 -10.19537 -9.32080 -9.16494 -8.83292 -8.68241 -8.24418 -8.12313 -6.12883 -4.14082 0.97579 1.45362 3.14424 3.17675 3.32505 3.35986 3.39900 4.13477 4.34218 4.39837 4.72289 4.92464 5.02284 5.05105 5.16217 5.21277 5.33618 5.49400 5.56296 6.02984 6.05713 6.13217 6.17711 6.22129 6.27562 6.55439 6.64723 6.75758 6.82398 6.91373 7.08102 7.21423 7.36542 7.44347 7.83571 8.18418 8.74574 8.92192 9.50118 10.97131 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.005691 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.424324 B = 4919.172683 C = 5271.235447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.104 4.104 3 C -0.002 4.002 4 H 0.083 0.917 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.897 3.103 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.400 3.600 14 O -0.454 6.454 15 C -0.079 4.079 16 C -0.134 4.134 17 C 0.121 3.879 18 F -0.138 7.138 19 C -0.233 4.233 20 C 0.137 3.863 21 O -0.312 6.312 22 C 0.026 3.974 23 C -0.116 4.116 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 -5.505 -10.248 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C -0.021 4.021 4 H 0.100 0.900 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.277 3.723 14 O -0.327 6.327 15 C -0.080 4.080 16 C -0.153 4.153 17 C 0.102 3.898 18 F -0.117 7.117 19 C -0.253 4.253 20 C 0.092 3.908 21 O -0.226 6.226 22 C -0.069 4.069 23 C -0.135 4.135 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.169 0.831 31 H 0.155 0.845 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.090 -5.331 -9.687 13.135 hybrid contribution -0.361 0.773 0.038 0.854 sum 6.728 -4.559 -9.649 12.616 Atomic orbital electron populations 1.21578 0.95823 0.98856 1.02685 1.21411 0.96260 0.97015 0.99487 1.19415 0.87782 0.93587 1.01326 0.89958 1.20771 1.44964 0.94456 0.93053 0.92036 1.25023 0.95004 0.97305 0.96512 1.69901 1.47725 1.07913 1.27390 0.86564 0.79435 0.78062 0.83505 1.20051 1.21289 1.19998 1.23890 0.94341 0.69418 0.84697 1.90344 1.66103 1.35877 1.40421 1.21005 0.92275 0.97545 0.97209 1.21516 1.02121 1.01908 0.89723 1.17242 0.87769 1.02014 0.82798 1.91490 1.74679 1.93872 1.51658 1.21158 0.92844 1.12119 0.99182 1.18546 0.82238 0.96797 0.93213 1.86119 1.17920 1.88783 1.29766 1.23068 0.99935 1.01397 0.82537 1.20810 0.94529 1.02623 0.95573 0.91760 0.93363 0.94844 0.92982 0.94449 0.92576 0.83059 0.84476 0.92632 0.92568 0.88206 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 9.65 37.16 0.36 -2.06 16 2 C -0.10 -2.07 5.37 -26.73 -0.14 -2.22 16 3 C 0.00 -0.05 1.62 -92.93 -0.15 -0.20 16 4 H 0.08 2.03 5.71 -51.93 -0.30 1.73 16 5 C -0.49 -13.23 6.85 -34.44 -0.24 -13.47 16 6 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 7 C 0.06 1.75 5.45 -17.82 -0.10 1.65 16 8 N -0.89 -25.01 12.84 55.43 0.71 -24.30 16 9 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 13 C 0.40 9.41 6.17 -30.68 -0.19 9.22 16 14 O -0.45 -11.75 16.34 5.58 0.09 -11.66 16 15 C -0.08 -1.58 5.87 -105.09 -0.62 -2.20 16 16 C -0.13 -2.43 9.34 -39.01 -0.36 -2.80 16 17 C 0.12 1.97 7.29 -39.51 -0.29 1.68 16 18 F -0.14 -2.17 17.26 2.25 0.04 -2.13 16 19 C -0.23 -3.39 9.01 -39.26 -0.35 -3.74 16 20 C 0.14 2.16 6.68 -39.30 -0.26 1.90 16 21 O -0.31 -4.35 10.49 -19.46 -0.20 -4.55 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.12 -2.14 9.53 -38.94 -0.37 -2.51 16 24 H 0.06 1.26 7.57 -51.92 -0.39 0.87 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.15 2.73 6.36 -52.48 -0.33 2.40 16 31 H 0.14 1.57 6.27 -52.48 -0.33 1.24 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.14 2.65 7.65 -52.48 -0.40 2.24 16 LS Contribution 306.14 15.07 4.61 4.61 Total: -1.00 -29.81 306.14 -5.70 -35.51 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.21 Total: -0.23 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.72 Total: -13.53 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.71 Total: -24.30 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.11 Total: -16.21 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.81 -5.70 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312415362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.265 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds