Wall clock time and date at job start Mon Mar 30 2020 07:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47462 * 2 1 4 4 H 1.08997 * 109.47000 * 305.59611 * 3 2 1 5 5 C 1.50700 * 109.46845 * 65.59092 * 3 2 1 6 6 H 1.07996 * 120.00489 * 35.16467 * 5 3 2 7 7 C 1.37883 * 120.00010 * 215.15626 * 5 3 2 8 8 N 1.31514 * 119.99610 * 354.68773 * 7 5 3 9 9 Si 1.86796 * 120.00048 * 174.68624 * 7 5 3 10 10 H 1.48502 * 109.47258 * 60.00630 * 9 7 5 11 11 H 1.48500 * 109.47048 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47296 * 300.00241 * 9 7 5 13 13 C 1.50693 * 109.47093 * 185.59200 * 3 2 1 14 14 O 1.21258 * 120.00318 * 269.99781 * 13 3 2 15 15 C 1.47185 * 120.00208 * 90.00191 * 13 3 2 16 16 C 1.39857 * 120.13204 * 359.72235 * 15 13 3 17 17 C 1.38136 * 119.90852 * 179.70212 * 16 15 13 18 18 F 1.35101 * 119.90578 * 180.32332 * 17 16 15 19 19 C 1.38534 * 120.18262 * 0.59651 * 17 16 15 20 20 C 1.38807 * 120.27236 * 359.68089 * 19 17 16 21 21 O 1.35911 * 119.95751 * 180.02562 * 20 19 17 22 22 C 1.42903 * 116.99978 * 359.97438 * 21 20 19 23 23 C 1.38441 * 120.08622 * 0.02562 * 20 19 17 24 24 H 1.09007 * 109.46862 * 294.78868 * 1 2 3 25 25 H 1.08996 * 109.46897 * 54.78089 * 1 2 3 26 26 H 1.08998 * 109.47427 * 174.78409 * 1 2 3 27 27 H 1.09005 * 109.46938 * 120.00179 * 2 1 3 28 28 H 1.08997 * 109.46935 * 239.99680 * 2 1 3 29 29 H 0.97006 * 119.99820 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.04393 * 359.97438 * 16 15 13 31 31 H 1.08003 * 119.86488 * 179.70197 * 19 17 16 32 32 H 1.08997 * 109.46737 * 299.99731 * 22 21 20 33 33 H 1.08994 * 109.46917 * 59.99857 * 22 21 20 34 34 H 1.08998 * 109.46650 * 180.02562 * 22 21 20 35 35 H 1.08010 * 120.09008 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8356 5 6 1.6540 2.1118 1.2938 6 1 1.6385 1.5436 2.2121 7 6 1.3207 3.4496 1.3053 8 7 1.4400 4.1664 0.2091 9 14 0.6997 4.2440 2.8777 10 1 1.7349 4.1233 3.9356 11 1 0.4125 5.6793 2.6272 12 1 -0.5424 3.5611 3.3203 13 6 3.5407 1.4446 -0.1384 14 8 4.2410 1.4114 0.8509 15 6 4.1565 1.4871 -1.4746 16 6 3.3515 1.5197 -2.6179 17 6 3.9343 1.5658 -3.8694 18 9 3.1567 1.6039 -4.9736 19 6 5.3139 1.5673 -3.9957 20 6 6.1200 1.5293 -2.8664 21 8 7.4727 1.5316 -2.9977 22 6 7.9954 1.5736 -4.3270 23 6 5.5478 1.4891 -1.6064 24 1 -0.3633 0.4309 0.9330 25 1 -0.3633 0.5926 -0.8395 26 1 -0.3634 -1.0234 -0.0934 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.2052 5.1075 0.2170 30 1 2.2758 1.5133 -2.5221 31 1 5.7641 1.5986 -4.9770 32 1 7.6488 0.7014 -4.8814 33 1 7.6513 2.4805 -4.8242 34 1 9.0847 1.5703 -4.2893 35 1 6.1750 1.4591 -0.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312415362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:26 Heat of formation + Delta-G solvation = -123.551029 kcal Electronic energy + Delta-G solvation = -20026.318297 eV Core-core repulsion = 16710.389554 eV Total energy + Delta-G solvation = -3315.928743 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.00021 -41.35351 -40.15229 -37.89092 -36.21002 -33.84810 -32.07074 -31.47238 -29.23367 -28.22222 -26.53009 -24.57396 -23.61571 -22.26962 -20.81394 -19.03118 -18.67597 -17.98637 -17.31573 -16.99458 -16.85510 -16.53633 -16.38935 -16.37811 -15.52383 -15.41227 -15.27468 -15.05089 -14.19095 -13.97683 -13.48189 -13.29899 -13.17462 -12.92348 -12.86421 -12.80282 -12.59073 -12.31557 -12.27344 -11.94897 -11.89950 -11.16373 -11.06279 -10.83614 -10.13388 -10.04226 -9.39809 -8.20034 -6.25856 -0.45612 0.11710 1.39991 1.42409 1.49406 1.57287 2.13822 2.41649 2.61930 3.02934 3.08048 3.42609 3.78604 3.85807 4.01739 4.12896 4.34907 4.40949 4.43373 4.53024 4.64274 4.70619 4.78075 4.86465 4.91408 5.01149 5.13859 5.17683 5.28737 5.40046 5.50822 5.57909 5.68702 5.73703 6.20422 6.25428 6.83136 6.93343 7.40155 8.89301 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.005691 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.424324 B = 4919.172683 C = 5271.235447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 C -0.007 4.007 4 H 0.071 0.929 5 C -0.507 4.507 6 H 0.048 0.952 7 C 0.018 3.982 8 N -0.919 5.919 9 Si 0.950 3.050 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.262 1.262 13 C 0.398 3.602 14 O -0.494 6.494 15 C -0.103 4.103 16 C -0.141 4.141 17 C 0.125 3.875 18 F -0.132 7.132 19 C -0.210 4.210 20 C 0.148 3.852 21 O -0.325 6.325 22 C 0.011 3.989 23 C -0.129 4.129 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.264 0.736 30 H 0.146 0.854 31 H 0.178 0.822 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -5.976 -12.347 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 C -0.026 4.026 4 H 0.089 0.911 5 C -0.544 4.544 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.187 1.187 13 C 0.277 3.723 14 O -0.371 6.371 15 C -0.105 4.105 16 C -0.160 4.160 17 C 0.106 3.894 18 F -0.110 7.110 19 C -0.229 4.229 20 C 0.102 3.898 21 O -0.239 6.239 22 C -0.083 4.083 23 C -0.148 4.148 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.196 0.804 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.768 -5.815 -11.807 15.283 hybrid contribution -0.447 0.874 0.562 1.132 sum 7.321 -4.941 -11.245 14.299 Atomic orbital electron populations 1.21523 0.94395 1.00848 1.01594 1.21379 0.97492 0.94708 1.00227 1.19439 0.88321 0.95440 0.99427 0.91113 1.21013 1.44789 0.94808 0.93832 0.93362 1.25697 0.95456 0.97847 0.99185 1.69994 1.48881 1.08001 1.28858 0.85724 0.79104 0.77522 0.80082 1.20718 1.20678 1.18672 1.23988 0.94301 0.68006 0.85961 1.90310 1.66653 1.38203 1.41951 1.20554 0.93268 1.00875 0.95767 1.21432 1.01759 1.02592 0.90256 1.17191 0.88513 1.01598 0.82129 1.91511 1.74722 1.93771 1.51037 1.21480 0.91786 1.09098 1.00557 1.18414 0.83508 0.95506 0.92344 1.86129 1.16434 1.88224 1.33067 1.23516 1.01463 1.02848 0.80423 1.20751 0.93809 1.03452 0.96788 0.93701 0.93406 0.91424 0.93783 0.92042 0.92656 0.83652 0.80436 0.90822 0.91257 0.85694 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.65 71.98 0.69 -3.86 16 2 C -0.10 -4.03 5.37 30.60 0.16 -3.86 16 3 C -0.01 -0.35 1.62 -12.29 -0.02 -0.37 16 4 H 0.07 3.60 5.71 -2.39 -0.01 3.59 16 5 C -0.51 -27.96 6.85 25.60 0.18 -27.78 16 6 H 0.05 2.72 7.82 -2.91 -0.02 2.69 16 7 C 0.02 0.98 5.45 84.66 0.46 1.45 16 8 N -0.92 -52.67 12.84 21.45 0.28 -52.40 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 C 0.40 19.42 6.17 28.04 0.17 19.60 16 14 O -0.49 -26.85 16.34 -2.96 -0.05 -26.90 16 15 C -0.10 -4.22 5.87 -20.17 -0.12 -4.34 16 16 C -0.14 -5.10 9.34 22.64 0.21 -4.89 16 17 C 0.13 3.78 7.29 22.32 0.16 3.95 16 18 F -0.13 -3.78 17.26 44.97 0.78 -3.00 16 19 C -0.21 -5.37 9.01 22.48 0.20 -5.17 16 20 C 0.15 4.36 6.68 22.45 0.15 4.51 16 21 O -0.32 -8.15 10.49 -92.55 -0.97 -9.12 16 22 C 0.01 0.15 9.81 113.37 1.11 1.27 16 23 C -0.13 -4.75 9.53 22.69 0.22 -4.54 16 24 H 0.04 1.76 7.57 -2.38 -0.02 1.75 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 29 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 30 H 0.15 5.32 6.36 -2.91 -0.02 5.30 16 31 H 0.18 3.08 6.27 -2.91 -0.02 3.07 16 32 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 33 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.13 5.05 7.65 -2.91 -0.02 5.03 16 Total: -1.00 -66.05 306.14 6.75 -59.31 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.10 Total: 9.75 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 3.59 Total: -24.04 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.28 Total: -52.40 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.02 Total: -36.02 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.05 6.75 -59.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312415362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.246 kcal (2) G-P(sol) polarization free energy of solvation -66.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds