Wall clock time and date at job start Mon Mar 30 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00203 * 2 1 4 4 C 1.38711 * 120.03996 * 0.02562 * 3 2 1 5 5 C 1.38344 * 119.91385 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.99399 * 179.97438 * 5 4 3 7 7 C 1.38520 * 120.00998 * 359.97438 * 5 4 3 8 8 C 1.38202 * 120.08137 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.95841 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.82470 * 205.87962 * 9 8 7 11 11 C 1.54383 * 109.82864 * 84.99934 * 9 8 7 12 12 C 1.55308 * 102.25463 * 219.04044 * 11 9 8 13 13 C 1.54951 * 100.93819 * 34.13293 * 12 11 9 14 14 H 1.09000 * 110.31192 * 82.57262 * 13 12 11 15 15 C 1.50706 * 110.30536 * 204.64244 * 13 12 11 16 16 H 1.07995 * 120.00167 * 359.72244 * 15 13 12 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47487 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47233 * 120.00158 * 19 17 15 22 22 H 1.48508 * 109.46883 * 239.99963 * 19 17 15 23 23 O 1.43232 * 109.90534 * 326.82411 * 9 8 7 24 24 C 1.38181 * 120.08501 * 0.29079 * 8 7 5 25 25 H 1.08996 * 109.47244 * 59.99997 * 1 2 3 26 26 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46734 * 299.99937 * 1 2 3 28 28 H 1.07998 * 120.04294 * 359.97438 * 4 3 2 29 29 H 1.07991 * 119.95719 * 179.97438 * 7 5 4 30 30 H 1.08995 * 110.85138 * 100.84923 * 11 9 8 31 31 H 1.09005 * 110.84713 * 337.23014 * 11 9 8 32 32 H 1.08999 * 111.12164 * 276.21809 * 12 11 9 33 33 H 1.08996 * 111.16673 * 152.06788 * 12 11 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.00536 * 179.72385 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 0.0005 5 6 1.9222 3.6060 0.0000 6 9 1.1888 4.7406 0.0000 7 6 3.3056 3.6756 -0.0005 8 6 4.0576 2.5161 0.0000 9 6 5.5625 2.5951 0.0000 10 1 5.9801 1.6930 -0.4472 11 6 6.0788 2.7496 1.4467 12 6 7.2484 3.7567 1.2736 13 6 6.7042 4.6448 0.1263 14 1 6.0313 5.4050 0.5229 15 6 7.8429 5.2925 -0.6187 16 1 8.8624 5.1054 -0.3156 17 6 7.5827 6.1282 -1.6841 18 7 6.3410 6.3604 -2.0498 19 14 8.9942 6.9305 -2.6080 20 1 10.2838 6.5110 -2.0031 21 1 8.9553 6.5115 -4.0321 22 1 8.8653 8.4075 -2.5229 23 8 5.9905 3.7460 -0.7375 24 6 3.4313 1.2843 -0.0050 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3198 0.0005 29 1 3.7972 4.6372 -0.0014 30 1 6.4412 1.7970 1.8331 31 1 5.3041 3.1622 2.0931 32 1 8.1646 3.2471 0.9751 33 1 7.4037 4.3394 2.1815 34 1 6.1581 6.9486 -2.7991 35 1 4.0202 0.3791 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312526563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:17 Heat of formation + Delta-G solvation = -107.366745 kcal Electronic energy + Delta-G solvation = -20072.492018 eV Core-core repulsion = 16757.265078 eV Total energy + Delta-G solvation = -3315.226940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.61349 -40.05662 -38.58115 -36.66535 -32.74749 -31.26788 -30.82389 -30.04067 -28.00699 -27.19687 -24.69814 -22.39157 -22.21931 -20.40822 -20.22253 -17.90838 -16.85942 -16.56938 -15.95490 -15.88359 -15.80393 -15.15769 -14.97382 -14.71818 -14.44152 -14.11703 -13.64454 -12.83215 -12.56653 -12.47300 -12.21546 -11.98967 -11.74557 -11.49142 -11.27152 -11.05829 -10.90788 -10.63852 -10.45513 -10.38646 -10.22831 -9.83711 -9.14767 -8.62886 -8.53001 -8.07904 -7.94103 -6.02864 -4.15916 1.35268 1.55873 3.19339 3.30064 3.38197 3.41399 3.80438 4.41583 4.45289 4.80665 4.94755 5.01729 5.05270 5.16682 5.27580 5.34877 5.39062 5.44887 5.55934 5.68705 5.73861 6.07924 6.22874 6.25066 6.25547 6.34341 6.46167 6.55374 6.66979 6.77145 6.93092 6.99118 7.41344 7.54078 7.87419 8.22420 8.56983 8.98810 9.55511 11.04705 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.005075 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.171513 B = 5516.129468 C = 6012.435241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.145 3.855 4 C -0.256 4.256 5 C 0.132 3.868 6 F -0.139 7.139 7 C -0.155 4.155 8 C -0.014 4.014 9 C 0.108 3.892 10 H 0.076 0.924 11 C -0.145 4.145 12 C -0.147 4.147 13 C 0.207 3.793 14 H 0.030 0.970 15 C -0.534 4.534 16 H 0.064 0.936 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 O -0.347 6.347 24 C -0.160 4.160 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.149 0.851 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.261 0.739 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 -10.325 5.778 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.100 3.900 4 C -0.275 4.275 5 C 0.113 3.887 6 F -0.118 7.118 7 C -0.174 4.174 8 C -0.015 4.015 9 C 0.049 3.951 10 H 0.094 0.906 11 C -0.183 4.183 12 C -0.185 4.185 13 C 0.152 3.848 14 H 0.048 0.952 15 C -0.571 4.571 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.498 5.498 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.209 1.209 23 O -0.267 6.267 24 C -0.179 4.179 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.152 0.848 29 H 0.167 0.833 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.792 -10.332 5.439 15.239 hybrid contribution 0.132 0.748 -0.423 0.869 sum -9.660 -9.585 5.017 14.503 Atomic orbital electron populations 1.23042 0.78629 1.03718 1.01450 1.86072 1.21216 1.26646 1.88897 1.18555 0.91865 0.83399 0.96154 1.20985 1.00492 0.91350 1.14694 1.17398 0.89312 0.81270 1.00754 1.91486 1.77266 1.49293 1.93750 1.21132 0.90997 1.01415 1.03813 1.20185 0.97292 0.91055 0.92982 1.21483 0.87301 0.93632 0.92698 0.90646 1.23114 0.98941 1.00178 0.96087 1.23350 0.97309 0.97397 1.00427 1.20605 0.90711 0.87215 0.86225 0.95219 1.21135 0.92219 1.27191 1.16599 0.91788 1.25080 0.95477 0.95517 0.96721 1.70024 1.18239 1.35059 1.26526 0.86560 0.82625 0.78996 0.79907 1.19617 1.20831 1.20912 1.88923 1.73742 1.29203 1.34789 1.20244 0.90950 0.98400 1.08264 0.92633 0.88330 0.92687 0.84841 0.83316 0.91318 0.91416 0.91371 0.91721 0.92885 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.10 10.50 -19.42 -0.20 -4.30 16 3 C 0.15 2.17 6.69 -39.23 -0.26 1.91 16 4 C -0.26 -3.81 9.02 -39.37 -0.35 -4.17 16 5 C 0.13 2.31 7.30 -39.44 -0.29 2.02 16 6 F -0.14 -2.47 17.27 2.25 0.04 -2.43 16 7 C -0.15 -3.00 9.34 -39.49 -0.37 -3.37 16 8 C -0.01 -0.26 4.88 -104.65 -0.51 -0.77 16 9 C 0.11 2.11 3.74 -27.16 -0.10 2.01 16 10 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 11 C -0.15 -2.50 6.53 -24.78 -0.16 -2.67 16 12 C -0.15 -2.93 6.53 -24.48 -0.16 -3.09 16 13 C 0.21 5.21 3.22 -26.85 -0.09 5.12 16 14 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.53 -14.77 8.79 -34.44 -0.30 -15.07 16 16 H 0.06 1.72 7.76 -52.49 -0.41 1.31 16 17 C 0.08 2.20 5.43 -17.82 -0.10 2.10 16 18 N -0.86 -25.44 13.05 55.43 0.72 -24.72 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 O -0.35 -8.77 9.49 -35.23 -0.33 -9.10 16 24 C -0.16 -2.53 9.63 -39.42 -0.38 -2.91 16 25 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 28 H 0.13 1.63 6.30 -52.49 -0.33 1.30 16 29 H 0.15 3.27 7.59 -52.49 -0.40 2.87 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.12 7.84 -51.93 -0.41 0.72 16 32 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -30.73 301.90 -6.75 -37.48 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.42 Total: -0.06 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -2.08 Total: -17.67 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.72 Total: -24.72 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.54 Total: -13.40 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.73 -6.75 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312526563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.882 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds