Wall clock time and date at job start Mon Mar 30 2020 07:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00203 * 2 1 4 4 C 1.38711 * 120.03996 * 0.02562 * 3 2 1 5 5 C 1.38344 * 119.91385 * 180.02562 * 4 3 2 6 6 F 1.35106 * 119.99399 * 179.97438 * 5 4 3 7 7 C 1.38520 * 120.00998 * 359.97438 * 5 4 3 8 8 C 1.38202 * 120.08137 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.95841 * 180.02562 * 8 7 5 10 10 H 1.08999 * 109.82470 * 205.87962 * 9 8 7 11 11 C 1.54383 * 109.82864 * 84.99934 * 9 8 7 12 12 C 1.55308 * 102.25463 * 219.04044 * 11 9 8 13 13 C 1.54951 * 100.93819 * 34.13293 * 12 11 9 14 14 H 1.09000 * 110.31192 * 82.57262 * 13 12 11 15 15 C 1.50706 * 110.30536 * 204.64244 * 13 12 11 16 16 H 1.07995 * 120.00167 * 359.72244 * 15 13 12 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47487 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47233 * 120.00158 * 19 17 15 22 22 H 1.48508 * 109.46883 * 239.99963 * 19 17 15 23 23 O 1.43232 * 109.90534 * 326.82411 * 9 8 7 24 24 C 1.38181 * 120.08501 * 0.29079 * 8 7 5 25 25 H 1.08996 * 109.47244 * 59.99997 * 1 2 3 26 26 H 1.08999 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46734 * 299.99937 * 1 2 3 28 28 H 1.07998 * 120.04294 * 359.97438 * 4 3 2 29 29 H 1.07991 * 119.95719 * 179.97438 * 7 5 4 30 30 H 1.08995 * 110.85138 * 100.84923 * 11 9 8 31 31 H 1.09005 * 110.84713 * 337.23014 * 11 9 8 32 32 H 1.08999 * 111.12164 * 276.21809 * 12 11 9 33 33 H 1.08996 * 111.16673 * 152.06788 * 12 11 9 34 34 H 0.96996 * 119.99730 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.00536 * 179.72385 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 0.0005 5 6 1.9222 3.6060 0.0000 6 9 1.1888 4.7406 0.0000 7 6 3.3056 3.6756 -0.0005 8 6 4.0576 2.5161 0.0000 9 6 5.5625 2.5951 0.0000 10 1 5.9801 1.6930 -0.4472 11 6 6.0788 2.7496 1.4467 12 6 7.2484 3.7567 1.2736 13 6 6.7042 4.6448 0.1263 14 1 6.0313 5.4050 0.5229 15 6 7.8429 5.2925 -0.6187 16 1 8.8624 5.1054 -0.3156 17 6 7.5827 6.1282 -1.6841 18 7 6.3410 6.3604 -2.0498 19 14 8.9942 6.9305 -2.6080 20 1 10.2838 6.5110 -2.0031 21 1 8.9553 6.5115 -4.0321 22 1 8.8653 8.4075 -2.5229 23 8 5.9905 3.7460 -0.7375 24 6 3.4313 1.2843 -0.0050 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3198 0.0005 29 1 3.7972 4.6372 -0.0014 30 1 6.4412 1.7970 1.8331 31 1 5.3041 3.1622 2.0931 32 1 8.1646 3.2471 0.9751 33 1 7.4037 4.3394 2.1815 34 1 6.1581 6.9486 -2.7991 35 1 4.0202 0.3791 -0.0091 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312526563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:16 Heat of formation + Delta-G solvation = -126.063255 kcal Electronic energy + Delta-G solvation = -20073.302759 eV Core-core repulsion = 16757.265078 eV Total energy + Delta-G solvation = -3316.037681 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.00333 -41.27791 -40.06285 -38.00148 -34.77269 -32.84585 -32.42181 -31.25397 -29.65769 -28.16752 -26.48189 -23.76027 -23.64271 -22.13321 -21.66223 -19.18114 -18.61483 -18.05612 -17.27578 -17.22089 -16.95985 -16.74263 -16.39260 -16.36982 -15.82944 -15.52496 -15.20774 -14.45667 -14.07051 -13.76278 -13.62863 -13.48973 -13.19694 -12.86442 -12.80102 -12.38976 -12.34309 -12.21688 -12.21426 -12.12737 -11.65421 -11.49021 -11.01778 -10.72996 -10.04440 -9.70690 -9.29361 -8.15075 -6.35996 0.05281 0.24182 1.40648 1.41866 1.54414 2.20714 2.41124 2.48532 3.07013 3.15632 3.56409 3.72879 3.89592 3.93327 3.99944 4.10674 4.26406 4.32555 4.39805 4.40781 4.58096 4.69435 4.74817 4.84453 4.95044 4.96684 4.99109 5.09327 5.14473 5.25458 5.48195 5.61284 5.66430 5.76422 6.18165 6.31444 6.60601 7.02467 7.40733 8.92951 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027173 B = 0.005075 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.171513 B = 5516.129468 C = 6012.435241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.318 6.318 3 C 0.157 3.843 4 C -0.242 4.242 5 C 0.120 3.880 6 F -0.146 7.146 7 C -0.184 4.184 8 C -0.024 4.024 9 C 0.097 3.903 10 H 0.093 0.907 11 C -0.130 4.130 12 C -0.139 4.139 13 C 0.201 3.799 14 H -0.009 1.009 15 C -0.554 4.554 16 H 0.068 0.932 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.962 3.038 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.278 1.278 23 O -0.384 6.384 24 C -0.155 4.155 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.067 0.933 28 H 0.166 0.834 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.260 0.740 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -12.846 6.347 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.111 3.889 4 C -0.262 4.262 5 C 0.101 3.899 6 F -0.125 7.125 7 C -0.203 4.203 8 C -0.025 4.025 9 C 0.039 3.961 10 H 0.111 0.889 11 C -0.168 4.168 12 C -0.177 4.177 13 C 0.145 3.855 14 H 0.009 0.991 15 C -0.591 4.591 16 H 0.086 0.914 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.786 3.214 20 H -0.183 1.183 21 H -0.208 1.208 22 H -0.203 1.203 23 O -0.304 6.304 24 C -0.174 4.174 25 H 0.081 0.919 26 H 0.146 0.854 27 H 0.086 0.914 28 H 0.183 0.817 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.200 -12.871 6.026 17.493 hybrid contribution 0.118 1.412 -0.573 1.529 sum -10.082 -11.458 5.453 16.207 Atomic orbital electron populations 1.23449 0.76106 1.06099 1.02425 1.86090 1.23725 1.25143 1.88216 1.18572 0.91711 0.84180 0.94435 1.21222 1.02090 0.89989 1.12861 1.17505 0.88636 0.82160 1.01597 1.91461 1.77178 1.49935 1.93919 1.20886 0.92231 1.00228 1.06941 1.20029 0.96485 0.91662 0.94310 1.21786 0.88468 0.92086 0.93799 0.88943 1.23070 0.97660 1.01234 0.94805 1.23228 0.98286 0.97320 0.98844 1.20452 0.89564 0.87729 0.87716 0.99142 1.21602 0.93159 1.27547 1.16791 0.91362 1.25982 0.97984 0.96246 0.97809 1.70189 1.20549 1.36193 1.27237 0.85467 0.79675 0.78013 0.78197 1.18258 1.20796 1.20322 1.88806 1.74272 1.30933 1.36377 1.20397 0.91860 0.97968 1.07153 0.91858 0.85444 0.91440 0.81700 0.87610 0.87290 0.91183 0.90864 0.90348 0.93070 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -7.06 10.50 -92.42 -0.97 -8.03 16 3 C 0.16 4.26 6.69 22.50 0.15 4.41 16 4 C -0.24 -6.74 9.02 22.41 0.20 -6.54 16 5 C 0.12 4.26 7.30 22.36 0.16 4.42 16 6 F -0.15 -5.33 17.27 44.97 0.78 -4.56 16 7 C -0.18 -7.49 9.34 22.33 0.21 -7.28 16 8 C -0.02 -0.89 4.88 -19.89 -0.10 -0.98 16 9 C 0.10 3.79 3.74 30.32 0.11 3.90 16 10 H 0.09 3.23 8.07 -2.39 -0.02 3.21 16 11 C -0.13 -4.32 6.53 31.86 0.21 -4.11 16 12 C -0.14 -5.52 6.53 32.05 0.21 -5.31 16 13 C 0.20 10.54 3.22 30.52 0.10 10.63 16 14 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 15 C -0.55 -31.53 8.79 25.60 0.23 -31.30 16 16 H 0.07 3.70 7.76 -2.91 -0.02 3.68 16 17 C 0.02 1.25 5.43 84.66 0.46 1.71 16 18 N -0.90 -55.98 13.05 21.45 0.28 -55.70 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 O -0.38 -20.23 9.49 -148.98 -1.41 -21.64 16 24 C -0.16 -4.59 9.63 22.37 0.22 -4.37 16 25 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 26 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.76 7.66 -2.38 -0.02 0.75 16 28 H 0.17 3.46 6.30 -2.91 -0.02 3.44 16 29 H 0.11 5.18 7.59 -2.92 -0.02 5.16 16 30 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.07 2.28 7.84 -2.38 -0.02 2.26 16 32 H 0.07 2.81 8.04 -2.39 -0.02 2.79 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.25 301.90 5.06 -65.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.09 Total: 11.61 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 3.27 Total: -33.53 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -2.38 Total: -29.67 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.78 Total: -4.56 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.25 5.06 -65.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312526563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.870 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds