Wall clock time and date at job start Mon Mar 30 2020 07:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99673 * 2 1 4 4 C 1.38713 * 120.04470 * 359.97438 * 3 2 1 5 5 C 1.38339 * 119.92374 * 180.02562 * 4 3 2 6 6 F 1.35100 * 120.00125 * 179.97438 * 5 4 3 7 7 C 1.38520 * 120.00289 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08492 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.95963 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.90042 * 159.06530 * 9 8 7 11 11 C 1.54383 * 109.83313 * 280.00042 * 9 8 7 12 12 C 1.55307 * 102.25355 * 140.86665 * 11 9 8 13 13 C 1.54945 * 100.94248 * 325.86865 * 12 11 9 14 14 H 1.09003 * 110.30587 * 277.42762 * 13 12 11 15 15 C 1.50699 * 110.30698 * 155.36244 * 13 12 11 16 16 H 1.08005 * 120.00174 * 359.97438 * 15 13 12 17 17 C 1.37876 * 119.99872 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00197 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00058 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47622 * 89.99338 * 19 17 15 21 21 H 1.48506 * 109.47216 * 209.99769 * 19 17 15 22 22 H 1.48498 * 109.47153 * 329.99399 * 19 17 15 23 23 O 1.43236 * 109.83006 * 38.13230 * 9 8 7 24 24 C 1.38179 * 120.08040 * 0.24820 * 8 7 5 25 25 H 1.08996 * 109.47551 * 60.00618 * 1 2 3 26 26 H 1.09007 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47610 * 299.99687 * 1 2 3 28 28 H 1.08007 * 120.03716 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.95796 * 179.97438 * 7 5 4 30 30 H 1.09006 * 110.84615 * 22.67611 * 11 9 8 31 31 H 1.08995 * 110.84672 * 259.06076 * 11 9 8 32 32 H 1.08998 * 111.12186 * 83.78838 * 12 11 9 33 33 H 1.08997 * 111.12112 * 207.90711 * 12 11 9 34 34 H 0.96997 * 120.00456 * 180.02562 * 18 17 15 35 35 H 1.07991 * 120.00053 * 179.72760 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9218 3.6061 -0.0011 6 9 1.1883 4.7407 -0.0021 7 6 3.3053 3.6759 -0.0016 8 6 4.0574 2.5163 -0.0021 9 6 5.5623 2.5955 -0.0033 10 1 5.9833 1.6591 0.3626 11 6 6.0710 2.8748 -1.4339 12 6 7.2400 3.8653 -1.1805 13 6 6.7006 4.6505 0.0415 14 1 6.0247 5.4408 -0.2850 15 6 7.8422 5.2338 0.8337 16 1 8.8607 5.0711 0.5132 17 6 7.5865 5.9743 1.9683 18 7 6.3464 6.1720 2.3589 19 14 9.0015 6.6968 2.9507 20 1 9.3188 8.0536 2.4373 21 1 8.6155 6.7868 4.3819 22 1 10.1953 5.8243 2.8141 23 8 5.9925 3.6794 0.8283 24 6 3.4312 1.2846 -0.0073 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2126 2.3198 -0.0014 29 1 3.7968 4.6375 -0.0024 30 1 5.2924 3.3401 -2.0385 31 1 6.4326 1.9596 -1.9026 32 1 8.1584 3.3336 -0.9317 33 1 7.3896 4.5236 -2.0363 34 1 6.1664 6.6932 3.1569 35 1 4.0201 0.3795 -0.0122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312526565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:19 Heat of formation + Delta-G solvation = -107.248051 kcal Electronic energy + Delta-G solvation = -20070.593983 eV Core-core repulsion = 16755.372190 eV Total energy + Delta-G solvation = -3315.221793 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.62513 -40.05898 -38.58339 -36.66607 -32.74622 -31.26022 -30.82206 -30.05360 -28.00395 -27.20301 -24.69633 -22.39707 -22.22919 -20.40410 -20.22635 -17.91023 -16.86425 -16.56907 -15.96205 -15.88578 -15.80734 -15.16524 -14.98791 -14.70642 -14.44332 -14.11678 -13.63420 -12.84513 -12.56239 -12.47831 -12.20965 -11.98513 -11.74958 -11.49403 -11.27833 -11.06901 -10.88782 -10.64847 -10.47213 -10.38052 -10.22921 -9.84062 -9.15152 -8.62770 -8.52832 -8.08067 -7.94196 -6.02392 -4.15701 1.35078 1.55219 3.19388 3.30779 3.37968 3.40864 3.79861 4.41727 4.44645 4.80580 4.94939 5.01865 5.06104 5.16679 5.27220 5.34166 5.38328 5.45366 5.55657 5.67553 5.74029 6.07981 6.22850 6.24669 6.25196 6.33787 6.44789 6.55523 6.66757 6.76806 6.91362 6.99014 7.40931 7.53873 7.87520 8.22633 8.57214 8.98806 9.55670 11.05032 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.005057 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.160525 B = 5535.052855 C = 5964.568420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.146 3.854 4 C -0.256 4.256 5 C 0.132 3.868 6 F -0.139 7.139 7 C -0.155 4.155 8 C -0.013 4.013 9 C 0.108 3.892 10 H 0.075 0.925 11 C -0.146 4.146 12 C -0.147 4.147 13 C 0.208 3.792 14 H 0.030 0.970 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.892 3.108 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.347 6.347 24 C -0.159 4.159 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.262 0.738 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 -9.825 -6.485 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.101 3.899 4 C -0.275 4.275 5 C 0.113 3.887 6 F -0.118 7.118 7 C -0.174 4.174 8 C -0.014 4.014 9 C 0.049 3.951 10 H 0.093 0.907 11 C -0.184 4.184 12 C -0.185 4.185 13 C 0.153 3.847 14 H 0.048 0.952 15 C -0.572 4.572 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.498 5.498 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 O -0.266 6.266 24 C -0.178 4.178 25 H 0.073 0.927 26 H 0.117 0.883 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.164 0.836 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.836 -9.864 -6.130 15.219 hybrid contribution 0.145 0.721 0.452 0.863 sum -9.690 -9.144 -5.678 14.483 Atomic orbital electron populations 1.23044 0.78625 1.03727 1.01451 1.86074 1.21222 1.26633 1.88881 1.18561 0.91871 0.83405 0.96086 1.20983 1.00499 0.91341 1.14685 1.17383 0.89284 0.81281 1.00759 1.91484 1.77270 1.49293 1.93756 1.21092 0.91029 1.01249 1.04015 1.20177 0.97284 0.91045 0.92885 1.21492 0.87260 0.94523 0.91847 0.90678 1.23127 0.98996 1.00091 0.96159 1.23351 0.97315 0.97603 1.00215 1.20595 0.90792 0.86606 0.86722 0.95233 1.21098 0.92196 1.32413 1.11519 0.91848 1.25078 0.95489 0.95127 0.97086 1.70015 1.18401 1.37598 1.23789 0.86614 0.82631 0.79392 0.79420 1.20540 1.21092 1.19728 1.88932 1.73919 1.30960 1.32822 1.20259 0.90956 0.98413 1.08181 0.92689 0.88324 0.92621 0.84828 0.83570 0.91400 0.91323 0.91375 0.91719 0.92830 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.11 10.50 -19.43 -0.20 -4.31 16 3 C 0.15 2.18 6.69 -39.23 -0.26 1.92 16 4 C -0.26 -3.81 9.02 -39.37 -0.35 -4.17 16 5 C 0.13 2.30 7.30 -39.44 -0.29 2.01 16 6 F -0.14 -2.45 17.27 2.25 0.04 -2.42 16 7 C -0.15 -2.99 9.32 -39.49 -0.37 -3.35 16 8 C -0.01 -0.24 4.85 -104.66 -0.51 -0.75 16 9 C 0.11 2.11 3.73 -27.16 -0.10 2.01 16 10 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 11 C -0.15 -2.51 6.53 -24.78 -0.16 -2.68 16 12 C -0.15 -2.93 6.53 -24.48 -0.16 -3.09 16 13 C 0.21 5.22 3.22 -26.86 -0.09 5.14 16 14 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 15 C -0.53 -14.81 8.79 -34.44 -0.30 -15.11 16 16 H 0.06 1.70 7.76 -52.48 -0.41 1.29 16 17 C 0.08 2.21 5.43 -17.82 -0.10 2.11 16 18 N -0.86 -25.49 13.05 55.43 0.72 -24.76 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 O -0.35 -8.78 9.65 -35.23 -0.34 -9.12 16 24 C -0.16 -2.53 9.61 -39.42 -0.38 -2.91 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.13 1.63 6.30 -52.48 -0.33 1.30 16 29 H 0.15 3.16 7.67 -52.49 -0.40 2.76 16 30 H 0.07 1.12 7.82 -51.93 -0.41 0.72 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.13 1.87 8.05 -52.49 -0.42 1.44 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -30.81 301.97 -6.75 -37.57 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.42 Total: -0.12 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -2.08 Total: -17.64 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.72 Total: -24.76 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.54 Total: -13.44 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.81 -6.75 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312526565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.682 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds