Wall clock time and date at job start Mon Mar 30 2020 07:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99673 * 2 1 4 4 C 1.38713 * 120.04470 * 359.97438 * 3 2 1 5 5 C 1.38339 * 119.92374 * 180.02562 * 4 3 2 6 6 F 1.35100 * 120.00125 * 179.97438 * 5 4 3 7 7 C 1.38520 * 120.00289 * 0.02562 * 5 4 3 8 8 C 1.38209 * 120.08492 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.95963 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.90042 * 159.06530 * 9 8 7 11 11 C 1.54383 * 109.83313 * 280.00042 * 9 8 7 12 12 C 1.55307 * 102.25355 * 140.86665 * 11 9 8 13 13 C 1.54945 * 100.94248 * 325.86865 * 12 11 9 14 14 H 1.09003 * 110.30587 * 277.42762 * 13 12 11 15 15 C 1.50699 * 110.30698 * 155.36244 * 13 12 11 16 16 H 1.08005 * 120.00174 * 359.97438 * 15 13 12 17 17 C 1.37876 * 119.99872 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00197 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 120.00058 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47622 * 89.99338 * 19 17 15 21 21 H 1.48506 * 109.47216 * 209.99769 * 19 17 15 22 22 H 1.48498 * 109.47153 * 329.99399 * 19 17 15 23 23 O 1.43236 * 109.83006 * 38.13230 * 9 8 7 24 24 C 1.38179 * 120.08040 * 0.24820 * 8 7 5 25 25 H 1.08996 * 109.47551 * 60.00618 * 1 2 3 26 26 H 1.09007 * 109.46856 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47610 * 299.99687 * 1 2 3 28 28 H 1.08007 * 120.03716 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.95796 * 179.97438 * 7 5 4 30 30 H 1.09006 * 110.84615 * 22.67611 * 11 9 8 31 31 H 1.08995 * 110.84672 * 259.06076 * 11 9 8 32 32 H 1.08998 * 111.12186 * 83.78838 * 12 11 9 33 33 H 1.08997 * 111.12112 * 207.90711 * 12 11 9 34 34 H 0.96997 * 120.00456 * 180.02562 * 18 17 15 35 35 H 1.07991 * 120.00053 * 179.72760 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3748 -0.0005 5 6 1.9218 3.6061 -0.0011 6 9 1.1883 4.7407 -0.0021 7 6 3.3053 3.6759 -0.0016 8 6 4.0574 2.5163 -0.0021 9 6 5.5623 2.5955 -0.0033 10 1 5.9833 1.6591 0.3626 11 6 6.0710 2.8748 -1.4339 12 6 7.2400 3.8653 -1.1805 13 6 6.7006 4.6505 0.0415 14 1 6.0247 5.4408 -0.2850 15 6 7.8422 5.2338 0.8337 16 1 8.8607 5.0711 0.5132 17 6 7.5865 5.9743 1.9683 18 7 6.3464 6.1720 2.3589 19 14 9.0015 6.6968 2.9507 20 1 9.3188 8.0536 2.4373 21 1 8.6155 6.7868 4.3819 22 1 10.1953 5.8243 2.8141 23 8 5.9925 3.6794 0.8283 24 6 3.4312 1.2846 -0.0073 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2126 2.3198 -0.0014 29 1 3.7968 4.6375 -0.0024 30 1 5.2924 3.3401 -2.0385 31 1 6.4326 1.9596 -1.9026 32 1 8.1584 3.3336 -0.9317 33 1 7.3896 4.5236 -2.0363 34 1 6.1664 6.6932 3.1569 35 1 4.0201 0.3795 -0.0122 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312526565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:19 Heat of formation + Delta-G solvation = -126.010476 kcal Electronic energy + Delta-G solvation = -20071.407582 eV Core-core repulsion = 16755.372190 eV Total energy + Delta-G solvation = -3316.035393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.00687 -41.28058 -40.06547 -38.00267 -34.77203 -32.83792 -32.42246 -31.26637 -29.65421 -28.17287 -26.48118 -23.74966 -23.66590 -22.13186 -21.66491 -19.18261 -18.61365 -18.05820 -17.27665 -17.22718 -16.96173 -16.74588 -16.39915 -16.37108 -15.82492 -15.52341 -15.20031 -14.44624 -14.08303 -13.77936 -13.63119 -13.46687 -13.20123 -12.85169 -12.79227 -12.40008 -12.34977 -12.22276 -12.21642 -12.14538 -11.65375 -11.49602 -11.02437 -10.71741 -10.03876 -9.71508 -9.29561 -8.14757 -6.35906 0.05129 0.23763 1.41084 1.42687 1.53473 2.20654 2.41279 2.48046 3.07659 3.15179 3.56348 3.74121 3.89252 3.92870 3.99289 4.09876 4.25580 4.32346 4.39455 4.40665 4.58079 4.69354 4.74612 4.83871 4.94842 4.96494 4.98604 5.08763 5.14397 5.24708 5.47903 5.60786 5.66138 5.76380 6.18257 6.31239 6.60535 7.02349 7.40817 8.92997 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.005057 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.160525 B = 5535.052855 C = 5964.568420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.157 3.843 4 C -0.242 4.242 5 C 0.121 3.879 6 F -0.146 7.146 7 C -0.183 4.183 8 C -0.024 4.024 9 C 0.097 3.903 10 H 0.093 0.907 11 C -0.131 4.131 12 C -0.139 4.139 13 C 0.201 3.799 14 H -0.009 1.009 15 C -0.555 4.555 16 H 0.068 0.932 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.286 1.286 22 H -0.262 1.262 23 O -0.384 6.384 24 C -0.156 4.156 25 H 0.067 0.933 26 H 0.127 0.873 27 H 0.063 0.937 28 H 0.166 0.834 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.261 0.739 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -12.219 -7.134 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.111 3.889 4 C -0.262 4.262 5 C 0.101 3.899 6 F -0.124 7.124 7 C -0.202 4.202 8 C -0.024 4.024 9 C 0.039 3.961 10 H 0.110 0.890 11 C -0.168 4.168 12 C -0.177 4.177 13 C 0.146 3.854 14 H 0.009 0.991 15 C -0.592 4.592 16 H 0.086 0.914 17 C -0.180 4.180 18 N -0.541 5.541 19 Si 0.786 3.214 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.186 1.186 23 O -0.304 6.304 24 C -0.174 4.174 25 H 0.086 0.914 26 H 0.145 0.855 27 H 0.081 0.919 28 H 0.183 0.817 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.246 -12.275 -6.799 17.375 hybrid contribution 0.133 1.349 0.622 1.492 sum -10.114 -10.926 -6.177 16.119 Atomic orbital electron populations 1.23450 0.76096 1.06102 1.02435 1.86091 1.23739 1.25158 1.88213 1.18578 0.91708 0.84200 0.94419 1.21223 1.02098 0.90000 1.12845 1.17490 0.88633 0.82161 1.01566 1.91461 1.77173 1.49894 1.93915 1.20871 0.92238 1.00127 1.06988 1.20022 0.96481 0.91674 0.94266 1.21790 0.88431 0.93278 0.92625 0.88978 1.23082 0.97735 1.00976 0.95046 1.23227 0.98284 0.97882 0.98280 1.20443 0.89632 0.86813 0.88529 0.99125 1.21576 0.93169 1.32638 1.11850 0.91375 1.25982 0.98022 0.95640 0.98355 1.70183 1.20718 1.38871 1.24351 0.85518 0.79424 0.78932 0.77488 1.19522 1.21139 1.18633 1.88813 1.74461 1.32334 1.34788 1.20412 0.91884 0.97993 1.07138 0.91396 0.85453 0.91872 0.81685 0.87595 0.91155 0.87347 0.90885 0.90336 0.93063 0.82527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -7.13 10.50 -92.44 -0.97 -8.10 16 3 C 0.16 4.28 6.69 22.50 0.15 4.43 16 4 C -0.24 -6.74 9.02 22.41 0.20 -6.53 16 5 C 0.12 4.25 7.30 22.36 0.16 4.41 16 6 F -0.15 -5.26 17.27 44.97 0.78 -4.48 16 7 C -0.18 -7.40 9.32 22.33 0.21 -7.19 16 8 C -0.02 -0.87 4.85 -19.89 -0.10 -0.97 16 9 C 0.10 3.80 3.73 30.32 0.11 3.91 16 10 H 0.09 3.22 8.04 -2.39 -0.02 3.20 16 11 C -0.13 -4.35 6.53 31.86 0.21 -4.14 16 12 C -0.14 -5.52 6.53 32.05 0.21 -5.31 16 13 C 0.20 10.56 3.22 30.51 0.10 10.66 16 14 H -0.01 -0.52 8.09 -2.39 -0.02 -0.54 16 15 C -0.56 -31.62 8.79 25.60 0.23 -31.40 16 16 H 0.07 3.69 7.76 -2.91 -0.02 3.67 16 17 C 0.02 1.27 5.43 84.65 0.46 1.73 16 18 N -0.90 -55.97 13.05 21.45 0.28 -55.70 16 19 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 23 O -0.38 -20.25 9.65 -148.98 -1.44 -21.69 16 24 C -0.16 -4.64 9.61 22.37 0.22 -4.43 16 25 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 26 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.06 0.78 7.66 -2.39 -0.02 0.77 16 28 H 0.17 3.46 6.30 -2.91 -0.02 3.44 16 29 H 0.11 5.08 7.67 -2.91 -0.02 5.06 16 30 H 0.07 2.29 7.82 -2.38 -0.02 2.27 16 31 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.07 2.81 8.04 -2.39 -0.02 2.79 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.16 3.88 8.05 -2.92 -0.02 3.85 16 Total: -1.00 -70.19 301.97 5.04 -65.16 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.09 Total: 11.73 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 3.27 Total: -33.55 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.28 Total: -55.70 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -2.41 Total: -29.79 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -70.19 5.04 -65.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312526565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.853 kcal (2) G-P(sol) polarization free energy of solvation -70.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds