Wall clock time and date at job start Mon Mar 30 2020 07:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00475 * 2 1 4 4 C 1.38716 * 120.03788 * 359.97438 * 3 2 1 5 5 C 1.38350 * 119.91627 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.99274 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00628 * 0.02562 * 5 4 3 8 8 C 1.38210 * 120.08389 * 359.97438 * 7 5 4 9 9 C 1.50697 * 119.95656 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.55355 * 207.87379 * 9 8 7 11 11 C 1.54992 * 110.62289 * 84.99182 * 9 8 7 12 12 C 1.54808 * 102.09663 * 204.31505 * 11 9 8 13 13 C 1.54103 * 104.18578 * 20.88343 * 12 11 9 14 14 H 1.09002 * 109.87915 * 242.60324 * 13 12 11 15 15 C 1.50698 * 109.87783 * 121.60033 * 13 12 11 16 16 H 1.07999 * 120.00087 * 0.31105 * 15 13 12 17 17 C 1.37883 * 119.99913 * 180.30135 * 15 13 12 18 18 N 1.31512 * 119.99645 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00110 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46933 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47124 * 120.00445 * 19 17 15 22 22 H 1.48494 * 109.47167 * 240.00488 * 19 17 15 23 23 O 1.43750 * 107.41924 * 2.10301 * 13 12 11 24 24 C 1.38169 * 120.08229 * 0.28732 * 8 7 5 25 25 H 1.09009 * 109.46951 * 300.00505 * 1 2 3 26 26 H 1.09004 * 109.46907 * 59.99770 * 1 2 3 27 27 H 1.08994 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.04575 * 0.02754 * 4 3 2 29 29 H 1.08005 * 119.95662 * 179.97438 * 7 5 4 30 30 H 1.09007 * 110.90687 * 86.11646 * 11 9 8 31 31 H 1.09004 * 110.94169 * 322.53115 * 11 9 8 32 32 H 1.08992 * 110.49201 * 262.20655 * 12 11 9 33 33 H 1.09007 * 110.48703 * 139.55607 * 12 11 9 34 34 H 0.97004 * 119.99535 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.00213 * 179.72932 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 -0.0005 5 6 1.9222 3.6061 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3056 3.6757 -0.0016 8 6 4.0576 2.5161 -0.0011 9 6 5.5625 2.5951 -0.0011 10 1 5.9920 1.7141 -0.4778 11 6 6.1010 2.7509 1.4439 12 6 7.4726 3.4286 1.2077 13 6 7.3456 4.0603 -0.1922 14 1 8.0706 3.6090 -0.8696 15 6 7.5803 5.5465 -0.1069 16 1 7.8039 6.0041 0.8454 17 6 7.5096 6.3219 -1.2448 18 7 7.2370 5.7646 -2.4044 19 14 7.7997 8.1642 -1.1390 20 1 8.0856 8.5403 0.2688 21 1 8.9564 8.5331 -1.9941 22 1 6.5883 8.8838 -1.6078 23 8 6.0116 3.8022 -0.6614 24 6 3.4313 1.2845 -0.0060 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2128 2.3199 -0.0005 29 1 3.7972 4.6373 -0.0024 30 1 6.2246 1.7780 1.9199 31 1 5.4475 3.3913 2.0363 32 1 8.2717 2.6875 1.2208 33 1 7.6523 4.1981 1.9586 34 1 7.1869 6.3103 -3.2048 35 1 4.0203 0.3791 -0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312526569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:24 Heat of formation + Delta-G solvation = -106.037034 kcal Electronic energy + Delta-G solvation = -20022.511341 eV Core-core repulsion = 16707.342062 eV Total energy + Delta-G solvation = -3315.169279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.66890 -40.06885 -38.47919 -36.76241 -32.73066 -31.27853 -30.81682 -30.10803 -27.92816 -27.23397 -24.64764 -22.47542 -22.34492 -20.46834 -19.98313 -17.97812 -16.91515 -16.70079 -15.98145 -15.91906 -15.67668 -15.20696 -14.97728 -14.51504 -14.39756 -14.04948 -13.78340 -12.91306 -12.75369 -12.42982 -12.31330 -12.13848 -11.63398 -11.50925 -11.32053 -11.00853 -10.93747 -10.63434 -10.43248 -10.33203 -10.06815 -9.83530 -9.20048 -8.63024 -8.52972 -8.09979 -8.00860 -6.01227 -4.14366 1.29792 1.51085 3.15385 3.30342 3.38639 3.41663 3.75730 4.40143 4.42361 4.72602 4.91131 4.99611 5.02410 5.14210 5.24668 5.34056 5.41116 5.51046 5.58623 5.67832 5.74664 6.05676 6.18938 6.21496 6.26121 6.30634 6.48830 6.62400 6.71311 6.76307 6.89120 6.96678 7.37294 7.52951 7.87966 8.22038 8.48698 8.98282 9.56672 11.06027 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.005302 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.351557 B = 5280.164507 C = 5959.719591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.147 3.853 4 C -0.254 4.254 5 C 0.131 3.869 6 F -0.139 7.139 7 C -0.154 4.154 8 C 0.003 3.997 9 C 0.099 3.901 10 H 0.067 0.933 11 C -0.139 4.139 12 C -0.146 4.146 13 C 0.202 3.798 14 H 0.028 0.972 15 C -0.533 4.533 16 H 0.063 0.937 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 O -0.341 6.341 24 C -0.158 4.158 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.135 0.865 29 H 0.151 0.849 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.261 0.739 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.923 -10.147 5.569 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.102 3.898 4 C -0.274 4.274 5 C 0.112 3.888 6 F -0.118 7.118 7 C -0.173 4.173 8 C 0.003 3.997 9 C 0.040 3.960 10 H 0.085 0.915 11 C -0.177 4.177 12 C -0.183 4.183 13 C 0.147 3.853 14 H 0.046 0.954 15 C -0.571 4.571 16 H 0.082 0.918 17 C -0.128 4.128 18 N -0.498 5.498 19 Si 0.717 3.283 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.208 1.208 23 O -0.261 6.261 24 C -0.177 4.177 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.152 0.848 29 H 0.169 0.831 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.006 -10.134 5.222 15.846 hybrid contribution -0.279 1.243 0.049 1.275 sum -11.285 -8.891 5.271 15.303 Atomic orbital electron populations 1.23052 0.78559 1.03776 1.01466 1.86074 1.21262 1.26567 1.88856 1.18514 0.91793 0.83447 0.96094 1.21003 1.00553 0.91332 1.14477 1.17400 0.89300 0.81290 1.00846 1.91485 1.77266 1.49286 1.93764 1.21141 0.90896 1.01533 1.03734 1.19499 0.95704 0.91120 0.93399 1.21853 0.88192 0.92902 0.93092 0.91514 1.23058 0.98036 1.00182 0.96398 1.23068 0.95010 0.99069 1.01200 1.20331 0.81409 0.95648 0.87942 0.95405 1.21219 1.49807 0.91825 0.94234 0.91847 1.25086 0.93751 0.98599 0.95409 1.70045 1.45718 1.35465 0.98555 0.86591 0.77860 0.85608 0.78248 1.19620 1.20895 1.20825 1.89406 1.33168 1.37991 1.65484 1.20213 0.91030 0.98349 1.08117 0.92663 0.92603 0.88283 0.84766 0.83106 0.91810 0.91196 0.92888 0.91250 0.92951 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.98 10.50 -19.42 -0.20 -4.19 16 3 C 0.15 2.13 6.69 -39.22 -0.26 1.87 16 4 C -0.25 -3.67 9.02 -39.36 -0.35 -4.03 16 5 C 0.13 2.21 7.30 -39.44 -0.29 1.93 16 6 F -0.14 -2.38 17.27 2.25 0.04 -2.34 16 7 C -0.15 -2.91 9.36 -39.49 -0.37 -3.28 16 8 C 0.00 0.06 5.09 -104.66 -0.53 -0.47 16 9 C 0.10 1.93 3.55 -26.83 -0.10 1.84 16 10 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 11 C -0.14 -2.47 6.57 -24.73 -0.16 -2.63 16 12 C -0.15 -2.93 6.63 -25.20 -0.17 -3.10 16 13 C 0.20 5.12 3.24 -27.31 -0.09 5.03 16 14 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 15 C -0.53 -14.79 8.78 -34.44 -0.30 -15.09 16 16 H 0.06 1.71 7.33 -52.49 -0.38 1.32 16 17 C 0.08 2.19 5.41 -17.82 -0.10 2.09 16 18 N -0.86 -25.58 12.93 55.43 0.72 -24.86 16 19 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 O -0.34 -8.65 9.47 -35.23 -0.33 -8.99 16 24 C -0.16 -2.46 9.65 -39.43 -0.38 -2.84 16 25 H 0.05 0.42 7.66 -51.92 -0.40 0.02 16 26 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.13 1.57 6.30 -52.49 -0.33 1.24 16 29 H 0.15 3.20 7.51 -52.48 -0.39 2.81 16 30 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.07 1.25 8.05 -51.93 -0.42 0.83 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.40 7.40 -51.92 -0.38 1.01 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -30.85 301.05 -6.75 -37.60 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.38 Total: -0.64 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -2.11 Total: -17.47 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.72 Total: -24.86 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.54 Total: -13.17 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.85 -6.75 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312526569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.432 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds