Wall clock time and date at job start Mon Mar 30 2020 07:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00475 * 2 1 4 4 C 1.38716 * 120.03788 * 359.97438 * 3 2 1 5 5 C 1.38350 * 119.91627 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.99274 * 179.97438 * 5 4 3 7 7 C 1.38515 * 120.00628 * 0.02562 * 5 4 3 8 8 C 1.38210 * 120.08389 * 359.97438 * 7 5 4 9 9 C 1.50697 * 119.95656 * 180.02562 * 8 7 5 10 10 H 1.08994 * 110.55355 * 207.87379 * 9 8 7 11 11 C 1.54992 * 110.62289 * 84.99182 * 9 8 7 12 12 C 1.54808 * 102.09663 * 204.31505 * 11 9 8 13 13 C 1.54103 * 104.18578 * 20.88343 * 12 11 9 14 14 H 1.09002 * 109.87915 * 242.60324 * 13 12 11 15 15 C 1.50698 * 109.87783 * 121.60033 * 13 12 11 16 16 H 1.07999 * 120.00087 * 0.31105 * 15 13 12 17 17 C 1.37883 * 119.99913 * 180.30135 * 15 13 12 18 18 N 1.31512 * 119.99645 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00110 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46933 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47124 * 120.00445 * 19 17 15 22 22 H 1.48494 * 109.47167 * 240.00488 * 19 17 15 23 23 O 1.43750 * 107.41924 * 2.10301 * 13 12 11 24 24 C 1.38169 * 120.08229 * 0.28732 * 8 7 5 25 25 H 1.09009 * 109.46951 * 300.00505 * 1 2 3 26 26 H 1.09004 * 109.46907 * 59.99770 * 1 2 3 27 27 H 1.08994 * 109.47410 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.04575 * 0.02754 * 4 3 2 29 29 H 1.08005 * 119.95662 * 179.97438 * 7 5 4 30 30 H 1.09007 * 110.90687 * 86.11646 * 11 9 8 31 31 H 1.09004 * 110.94169 * 322.53115 * 11 9 8 32 32 H 1.08992 * 110.49201 * 262.20655 * 12 11 9 33 33 H 1.09007 * 110.48703 * 139.55607 * 12 11 9 34 34 H 0.97004 * 119.99535 * 179.97438 * 18 17 15 35 35 H 1.08002 * 120.00213 * 179.72932 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3747 -0.0005 5 6 1.9222 3.6061 -0.0011 6 9 1.1887 4.7406 -0.0021 7 6 3.3056 3.6757 -0.0016 8 6 4.0576 2.5161 -0.0011 9 6 5.5625 2.5951 -0.0011 10 1 5.9920 1.7141 -0.4778 11 6 6.1010 2.7509 1.4439 12 6 7.4726 3.4286 1.2077 13 6 7.3456 4.0603 -0.1922 14 1 8.0706 3.6090 -0.8696 15 6 7.5803 5.5465 -0.1069 16 1 7.8039 6.0041 0.8454 17 6 7.5096 6.3219 -1.2448 18 7 7.2370 5.7646 -2.4044 19 14 7.7997 8.1642 -1.1390 20 1 8.0856 8.5403 0.2688 21 1 8.9564 8.5331 -1.9941 22 1 6.5883 8.8838 -1.6078 23 8 6.0116 3.8022 -0.6614 24 6 3.4313 1.2845 -0.0060 25 1 -0.3633 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.2128 2.3199 -0.0005 29 1 3.7972 4.6373 -0.0024 30 1 6.2246 1.7780 1.9199 31 1 5.4475 3.3913 2.0363 32 1 8.2717 2.6875 1.2208 33 1 7.6523 4.1981 1.9586 34 1 7.1869 6.3103 -3.2048 35 1 4.0203 0.3791 -0.0100 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312526569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:23 Heat of formation + Delta-G solvation = -124.777673 kcal Electronic energy + Delta-G solvation = -20023.323996 eV Core-core repulsion = 16707.342062 eV Total energy + Delta-G solvation = -3315.981934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.00205 -41.23912 -39.98817 -38.07736 -34.75851 -32.82890 -32.44560 -31.28788 -29.58042 -28.17000 -26.42557 -23.93854 -23.67240 -21.97430 -21.61006 -19.28161 -18.70579 -18.03250 -17.22842 -17.07149 -16.93930 -16.72322 -16.36599 -16.24176 -15.79418 -15.51933 -15.40305 -14.46069 -14.22882 -13.86523 -13.58352 -13.49425 -13.18778 -12.87640 -12.81302 -12.50400 -12.32489 -12.22794 -12.10266 -11.90790 -11.68102 -11.49752 -11.05508 -10.71872 -10.08886 -9.73231 -9.30199 -8.15404 -6.35399 0.03556 0.23301 1.38438 1.40278 1.52054 2.19319 2.39897 2.47684 3.05624 3.14379 3.48838 3.74594 3.90714 3.97847 4.03191 4.12578 4.27910 4.30656 4.39332 4.41633 4.55763 4.71400 4.75509 4.81281 4.94093 4.99222 5.02004 5.11407 5.15141 5.25041 5.50315 5.58239 5.62402 5.74154 6.18220 6.31216 6.53557 6.96555 7.40389 8.92644 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025008 B = 0.005302 C = 0.004697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.351557 B = 5280.164507 C = 5959.719591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.158 3.842 4 C -0.240 4.240 5 C 0.122 3.878 6 F -0.145 7.145 7 C -0.182 4.182 8 C -0.009 4.009 9 C 0.091 3.909 10 H 0.079 0.921 11 C -0.126 4.126 12 C -0.138 4.138 13 C 0.194 3.806 14 H -0.005 1.005 15 C -0.552 4.552 16 H 0.065 0.935 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.957 3.043 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.284 1.284 23 O -0.378 6.378 24 C -0.154 4.154 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.261 0.739 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 -11.791 6.803 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.112 3.888 4 C -0.259 4.259 5 C 0.103 3.897 6 F -0.123 7.123 7 C -0.201 4.201 8 C -0.009 4.009 9 C 0.033 3.967 10 H 0.097 0.903 11 C -0.163 4.163 12 C -0.176 4.176 13 C 0.138 3.862 14 H 0.013 0.987 15 C -0.589 4.589 16 H 0.083 0.917 17 C -0.179 4.179 18 N -0.540 5.540 19 Si 0.782 3.218 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.210 1.210 23 O -0.298 6.298 24 C -0.173 4.173 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.145 0.855 28 H 0.184 0.816 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.507 -11.791 6.476 18.368 hybrid contribution 0.071 1.605 -0.338 1.641 sum -12.436 -10.186 6.138 17.207 Atomic orbital electron populations 1.23457 0.76041 1.06109 1.02483 1.86091 1.23769 1.25145 1.88192 1.18522 0.91578 0.84258 0.94436 1.21249 1.02160 0.89991 1.12543 1.17467 0.88575 0.82161 1.01520 1.91466 1.77139 1.49822 1.93901 1.20911 0.92142 1.00396 1.06676 1.19349 0.94649 0.91898 0.95003 1.22111 0.89622 0.91132 0.93870 0.90307 1.23010 0.96002 1.01901 0.95390 1.22951 0.97413 0.99522 0.97718 1.20239 0.81039 0.94753 0.90189 0.98745 1.21663 1.49406 0.93565 0.94313 0.91704 1.25940 0.93555 1.03358 0.95053 1.70184 1.47405 1.37157 0.99255 0.85536 0.77706 0.79819 0.78755 1.18466 1.19978 1.20988 1.89314 1.32829 1.40820 1.66841 1.20348 0.91980 0.97865 1.07092 0.91389 0.91757 0.85504 0.81590 0.86933 0.87683 0.91666 0.90491 0.91482 0.93053 0.82546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.28 16 2 O -0.32 -6.84 10.50 -92.40 -0.97 -7.81 16 3 C 0.16 4.14 6.69 22.50 0.15 4.29 16 4 C -0.24 -6.35 9.02 22.41 0.20 -6.14 16 5 C 0.12 4.09 7.30 22.36 0.16 4.26 16 6 F -0.14 -4.96 17.27 44.97 0.78 -4.18 16 7 C -0.18 -7.11 9.36 22.33 0.21 -6.90 16 8 C -0.01 -0.31 5.09 -19.89 -0.10 -0.41 16 9 C 0.09 3.57 3.55 30.53 0.11 3.68 16 10 H 0.08 2.86 8.10 -2.39 -0.02 2.84 16 11 C -0.13 -4.30 6.57 31.89 0.21 -4.09 16 12 C -0.14 -5.52 6.63 31.58 0.21 -5.31 16 13 C 0.19 10.17 3.24 30.22 0.10 10.26 16 14 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 15 C -0.55 -31.62 8.78 25.60 0.22 -31.40 16 16 H 0.06 3.57 7.33 -2.91 -0.02 3.55 16 17 C 0.02 1.33 5.41 84.66 0.46 1.79 16 18 N -0.90 -55.79 12.93 21.45 0.28 -55.51 16 19 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 23 O -0.38 -20.03 9.47 -148.98 -1.41 -21.44 16 24 C -0.15 -4.46 9.65 22.37 0.22 -4.25 16 25 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 26 H 0.06 0.73 7.66 -2.38 -0.02 0.71 16 27 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.17 3.25 6.30 -2.91 -0.02 3.23 16 29 H 0.11 5.19 7.51 -2.91 -0.02 5.17 16 30 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.06 2.29 8.05 -2.39 -0.02 2.27 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 2.68 7.40 -2.38 -0.02 2.66 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -69.92 301.05 5.05 -64.87 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.09 Total: 9.99 kcal Atomic # 6 Polarization: -36.22 SS G_CDS: 3.26 Total: -32.96 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -2.38 Total: -29.26 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -69.92 5.05 -64.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312526569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.907 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds