Wall clock time and date at job start Mon Mar 30 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47468 * 90.00302 * 3 2 1 5 5 H 1.48504 * 109.47064 * 210.00209 * 3 2 1 6 6 H 1.48503 * 109.47291 * 329.99813 * 3 2 1 7 7 C 1.37877 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00100 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.67242 * 56.76878 * 9 7 2 11 11 C 1.54894 * 110.75893 * 293.33050 * 9 7 2 12 12 C 1.54262 * 104.19828 * 203.74282 * 11 9 7 13 13 C 1.53883 * 106.59965 * 23.60975 * 12 11 9 14 14 H 1.09002 * 110.07253 * 240.69813 * 13 12 11 15 15 N 1.46499 * 110.03025 * 119.28520 * 13 12 11 16 16 C 1.32209 * 120.00245 * 68.99546 * 15 13 12 17 17 C 1.46832 * 121.21042 * 188.06005 * 16 15 13 18 18 C 1.34677 * 118.55393 * 180.02562 * 17 16 15 19 19 N 1.35868 * 121.29808 * 359.97438 * 18 17 16 20 20 H 0.96999 * 118.60669 * 180.02562 * 19 18 17 21 21 C 1.35999 * 122.79137 * 0.02562 * 19 18 17 22 22 C 1.34735 * 121.25165 * 359.69096 * 21 19 18 23 23 Cl 1.73601 * 120.73978 * 180.29183 * 22 21 19 24 24 C 1.54273 * 106.59603 * 359.97438 * 13 12 11 25 25 H 0.96996 * 120.00523 * 180.02562 * 1 2 3 26 26 H 1.08998 * 110.48474 * 322.42255 * 11 9 7 27 27 H 1.09001 * 110.48175 * 85.06420 * 11 9 7 28 28 H 1.08999 * 110.03419 * 264.32757 * 12 11 9 29 29 H 1.08997 * 110.07691 * 142.91246 * 12 11 9 30 30 H 1.08000 * 120.72078 * 359.97438 * 17 16 15 31 31 H 1.08000 * 119.35396 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.37513 * 180.02562 * 21 19 18 33 33 H 1.08994 * 110.48535 * 217.70970 * 24 13 12 34 34 H 1.09006 * 110.59435 * 95.12400 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5466 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.5742 -2.5527 -0.8533 11 6 0.4802 -2.6880 1.3297 12 6 0.2970 -4.2152 1.4472 13 6 1.4101 -4.8579 0.6011 14 1 0.9737 -5.4599 -0.1960 15 7 2.2662 -5.6919 1.4482 16 6 1.7932 -6.8125 1.9664 17 6 2.5626 -7.5776 2.9556 18 6 2.0297 -8.7121 3.4482 19 7 0.8075 -9.1499 3.0473 20 1 0.4609 -9.9721 3.4278 21 6 0.0494 -8.4843 2.1352 22 6 0.4760 -7.3344 1.5776 23 17 -0.5059 -6.4918 0.4202 24 6 2.2304 -3.6987 -0.0017 25 1 -0.4851 -0.8400 0.0004 26 1 1.0657 -2.3085 2.1670 27 1 -0.4883 -2.1901 1.2833 28 1 -0.6801 -4.5049 1.0608 29 1 0.3934 -4.5246 2.4879 30 1 3.5351 -7.2383 3.2805 31 1 2.5847 -9.2852 4.1761 32 1 -0.9152 -8.8823 1.8566 33 1 2.5393 -3.9386 -1.0190 34 1 3.0999 -3.4811 0.6188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336189269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:56 Heat of formation + Delta-G solvation = 55.242468 kcal Electronic energy + Delta-G solvation = -17861.394143 eV Core-core repulsion = 15013.847595 eV Total energy + Delta-G solvation = -2847.546549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02918 -37.82685 -36.37822 -34.54448 -32.31930 -31.50045 -29.85232 -27.90777 -26.42807 -23.68962 -23.11178 -22.13896 -19.41482 -19.29978 -18.93756 -16.83957 -16.49881 -16.08134 -15.22964 -14.55437 -14.46928 -14.16675 -13.62535 -13.50896 -12.88634 -12.75038 -12.14390 -12.12134 -11.61271 -11.36608 -11.01882 -10.69984 -10.44804 -10.15183 -10.02224 -9.95042 -9.75998 -9.53634 -9.27954 -9.09103 -8.36066 -8.17454 -8.10325 -7.04994 -6.16206 -3.85673 1.28844 1.49321 2.09295 3.06761 3.53393 3.57189 3.58134 3.73006 4.34582 4.48408 4.67361 4.91050 5.14174 5.33148 5.53843 5.74817 5.81536 5.87990 5.99132 6.10376 6.38507 6.46233 6.65802 6.80287 6.84285 6.85852 6.99074 7.06319 7.12461 7.31426 7.35150 7.56841 7.90869 8.42748 8.49755 8.64596 9.08429 9.85696 11.22002 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039727 B = 0.004793 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.649504 B = 5839.924536 C = 6227.821265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 1.069 2.931 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.586 4.586 8 H 0.048 0.952 9 C 0.035 3.965 10 H 0.019 0.981 11 C -0.113 4.113 12 C -0.121 4.121 13 C 0.045 3.955 14 H 0.079 0.921 15 N -0.513 5.513 16 C 0.206 3.794 17 C -0.169 4.169 18 C 0.091 3.909 19 N -0.616 5.616 20 H 0.415 0.585 21 C 0.122 3.878 22 C -0.166 4.166 23 Cl -0.035 7.035 24 C -0.091 4.091 25 H 0.271 0.729 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.149 0.851 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.040 0.960 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -22.650 7.375 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.898 3.102 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.625 4.625 8 H 0.066 0.934 9 C 0.016 3.984 10 H 0.037 0.963 11 C -0.152 4.152 12 C -0.159 4.159 13 C -0.064 4.064 14 H 0.096 0.904 15 N -0.224 5.224 16 C 0.023 3.977 17 C -0.195 4.195 18 C -0.034 4.034 19 N -0.226 5.226 20 H 0.249 0.751 21 C -0.006 4.006 22 C -0.203 4.203 23 Cl -0.006 7.006 24 C -0.129 4.129 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.167 0.833 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.059 0.941 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.221 -20.172 7.105 21.388 hybrid contribution -0.890 -2.215 -0.078 2.389 sum -1.112 -22.387 7.028 23.490 Atomic orbital electron populations 1.70743 1.06839 1.30875 1.47137 1.25751 0.96610 1.02385 0.93896 0.83554 0.74708 0.75342 0.76599 1.21637 1.21589 1.21184 1.22012 0.94044 0.91532 1.54876 0.93384 1.19693 0.93179 0.93189 0.92323 0.96283 1.22518 1.00016 0.91772 1.00852 1.22869 0.96987 0.98108 0.97925 1.23190 0.93059 0.94755 0.95436 0.90403 1.73106 1.32944 1.04080 1.12310 1.21292 0.88000 0.93568 0.94843 1.21501 1.01816 0.95606 1.00548 1.21352 0.86251 0.96691 0.99077 1.40638 1.16596 1.25883 1.39451 0.75085 1.21116 0.95882 0.92790 0.90824 1.22469 0.96852 0.97768 1.03218 1.98332 1.69403 1.75116 1.57743 1.22251 0.98973 0.93860 0.97845 0.91730 0.93003 0.93079 0.92219 0.93685 0.83335 0.82209 0.82452 0.94104 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.96 13.49 55.43 0.75 -28.21 16 2 C 0.02 0.51 5.36 -17.82 -0.10 0.42 16 3 Si 1.07 26.65 29.90 -169.99 -5.08 21.57 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.59 -17.69 8.49 -34.44 -0.29 -17.98 16 8 H 0.05 1.45 7.77 -52.48 -0.41 1.05 16 9 C 0.04 0.96 2.37 -89.79 -0.21 0.75 16 10 H 0.02 0.55 7.91 -51.93 -0.41 0.14 16 11 C -0.11 -2.91 5.69 -25.07 -0.14 -3.05 16 12 C -0.12 -2.63 5.01 -25.61 -0.13 -2.75 16 13 C 0.05 0.98 2.79 -66.80 -0.19 0.79 16 14 H 0.08 1.62 4.94 -51.93 -0.26 1.37 16 15 N -0.51 -10.36 10.28 -48.27 -0.50 -10.85 16 16 C 0.21 3.32 6.51 -80.72 -0.53 2.80 16 17 C -0.17 -1.97 10.28 -37.37 -0.38 -2.36 16 18 C 0.09 0.65 11.13 -17.03 -0.19 0.46 16 19 N -0.62 -3.72 5.22 -13.11 -0.07 -3.79 16 20 H 0.41 0.79 8.88 -40.82 -0.36 0.43 16 21 C 0.12 1.08 10.92 -16.95 -0.19 0.90 16 22 C -0.17 -2.28 6.24 -37.31 -0.23 -2.51 16 23 Cl -0.03 -0.53 20.74 -51.86 -1.08 -1.61 16 24 C -0.09 -2.25 5.95 -25.08 -0.15 -2.40 16 25 H 0.27 8.49 5.56 -40.82 -0.23 8.26 16 26 H 0.05 1.40 8.04 -51.93 -0.42 0.99 16 27 H 0.05 1.35 6.67 -51.93 -0.35 1.01 16 28 H 0.06 1.21 5.70 -51.93 -0.30 0.92 16 29 H 0.04 0.96 7.65 -51.93 -0.40 0.57 16 30 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.16 0.47 8.06 -52.49 -0.42 0.04 16 32 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.64 7.94 -51.93 -0.41 1.23 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -36.62 285.06 -8.42 -45.04 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.02 Total: -1.50 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -2.73 Total: -24.94 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.18 Total: -42.85 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -5.08 Total: 21.57 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.08 Total: -1.61 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -36.62 -8.42 -45.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336189269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.286 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds