Wall clock time and date at job start Mon Mar 30 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47468 * 90.00302 * 3 2 1 5 5 H 1.48504 * 109.47064 * 210.00209 * 3 2 1 6 6 H 1.48503 * 109.47291 * 329.99813 * 3 2 1 7 7 C 1.37877 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99704 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00100 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.67242 * 56.76878 * 9 7 2 11 11 C 1.54894 * 110.75893 * 293.33050 * 9 7 2 12 12 C 1.54262 * 104.19828 * 203.74282 * 11 9 7 13 13 C 1.53883 * 106.59965 * 23.60975 * 12 11 9 14 14 H 1.09002 * 110.07253 * 240.69813 * 13 12 11 15 15 N 1.46499 * 110.03025 * 119.28520 * 13 12 11 16 16 C 1.32209 * 120.00245 * 68.99546 * 15 13 12 17 17 C 1.46832 * 121.21042 * 188.06005 * 16 15 13 18 18 C 1.34677 * 118.55393 * 180.02562 * 17 16 15 19 19 N 1.35868 * 121.29808 * 359.97438 * 18 17 16 20 20 H 0.96999 * 118.60669 * 180.02562 * 19 18 17 21 21 C 1.35999 * 122.79137 * 0.02562 * 19 18 17 22 22 C 1.34735 * 121.25165 * 359.69096 * 21 19 18 23 23 Cl 1.73601 * 120.73978 * 180.29183 * 22 21 19 24 24 C 1.54273 * 106.59603 * 359.97438 * 13 12 11 25 25 H 0.96996 * 120.00523 * 180.02562 * 1 2 3 26 26 H 1.08998 * 110.48474 * 322.42255 * 11 9 7 27 27 H 1.09001 * 110.48175 * 85.06420 * 11 9 7 28 28 H 1.08999 * 110.03419 * 264.32757 * 12 11 9 29 29 H 1.08997 * 110.07691 * 142.91246 * 12 11 9 30 30 H 1.08000 * 120.72078 * 359.97438 * 17 16 15 31 31 H 1.08000 * 119.35396 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.37513 * 180.02562 * 21 19 18 33 33 H 1.08994 * 110.48535 * 217.70970 * 24 13 12 34 34 H 1.09006 * 110.59435 * 95.12400 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5466 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.5742 -2.5527 -0.8533 11 6 0.4802 -2.6880 1.3297 12 6 0.2970 -4.2152 1.4472 13 6 1.4101 -4.8579 0.6011 14 1 0.9737 -5.4599 -0.1960 15 7 2.2662 -5.6919 1.4482 16 6 1.7932 -6.8125 1.9664 17 6 2.5626 -7.5776 2.9556 18 6 2.0297 -8.7121 3.4482 19 7 0.8075 -9.1499 3.0473 20 1 0.4609 -9.9721 3.4278 21 6 0.0494 -8.4843 2.1352 22 6 0.4760 -7.3344 1.5776 23 17 -0.5059 -6.4918 0.4202 24 6 2.2304 -3.6987 -0.0017 25 1 -0.4851 -0.8400 0.0004 26 1 1.0657 -2.3085 2.1670 27 1 -0.4883 -2.1901 1.2833 28 1 -0.6801 -4.5049 1.0608 29 1 0.3934 -4.5246 2.4879 30 1 3.5351 -7.2383 3.2805 31 1 2.5847 -9.2852 4.1761 32 1 -0.9152 -8.8823 1.8566 33 1 2.5393 -3.9386 -1.0190 34 1 3.0999 -3.4811 0.6188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336189269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:56 Heat of formation + Delta-G solvation = 28.568137 kcal Electronic energy + Delta-G solvation = -17862.550829 eV Core-core repulsion = 15013.847595 eV Total energy + Delta-G solvation = -2848.703235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.92055 -39.44231 -37.59460 -35.99820 -34.26926 -32.34080 -31.13973 -29.91113 -28.12013 -25.78820 -24.06929 -23.29978 -21.49818 -20.75242 -19.83163 -18.94493 -17.56769 -17.39084 -16.52859 -15.96169 -15.67538 -15.41025 -15.33522 -15.07219 -14.50390 -14.18263 -13.54829 -13.37087 -13.25065 -12.94018 -12.76379 -12.66781 -12.09148 -11.92619 -11.77366 -11.71167 -11.52786 -11.26989 -11.05722 -10.53608 -10.46522 -10.20246 -9.52195 -8.59801 -8.10778 -6.30658 0.39261 0.61939 1.16951 1.49835 1.60122 1.78452 2.35756 2.57362 2.59314 3.19734 3.50095 3.57881 3.98717 4.03334 4.14218 4.25565 4.30886 4.50916 4.62160 4.67185 4.84670 4.92433 4.97736 5.01095 5.08758 5.18219 5.26088 5.41839 5.43969 5.59411 5.69544 6.00422 6.13701 6.23041 6.48979 6.66827 7.26493 7.49383 8.78429 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039727 B = 0.004793 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.649504 B = 5839.924536 C = 6227.821265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.031 4.031 3 Si 1.118 2.882 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.609 4.609 8 H 0.038 0.962 9 C 0.028 3.972 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.103 4.103 13 C 0.066 3.934 14 H 0.081 0.919 15 N -0.598 5.598 16 C 0.217 3.783 17 C -0.223 4.223 18 C 0.145 3.855 19 N -0.585 5.585 20 H 0.445 0.555 21 C 0.173 3.827 22 C -0.226 4.226 23 Cl -0.060 7.060 24 C -0.086 4.086 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.146 0.854 31 H 0.221 0.779 32 H 0.200 0.800 33 H 0.037 0.963 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -26.415 9.513 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.229 4.229 3 Si 0.940 3.060 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.647 4.647 8 H 0.056 0.944 9 C 0.009 3.991 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.141 4.141 13 C -0.045 4.045 14 H 0.098 0.902 15 N -0.314 5.314 16 C 0.039 3.961 17 C -0.250 4.250 18 C 0.018 3.982 19 N -0.195 5.195 20 H 0.286 0.714 21 C 0.042 3.958 22 C -0.264 4.264 23 Cl -0.032 7.032 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.164 0.836 31 H 0.237 0.763 32 H 0.217 0.783 33 H 0.056 0.944 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.544 -24.038 9.285 25.775 hybrid contribution -0.859 -1.493 -0.537 1.805 sum -1.403 -25.532 8.748 27.025 Atomic orbital electron populations 1.70858 1.07648 1.30269 1.48663 1.27310 0.96721 1.06240 0.92637 0.82932 0.74127 0.71288 0.77674 1.19970 1.19894 1.20326 1.22356 0.93867 0.93252 1.55184 0.94361 1.19666 0.93537 0.93697 0.92222 0.98616 1.22314 0.98184 0.94982 0.98803 1.22770 0.98407 0.94602 0.98362 1.22766 0.91935 0.93897 0.95853 0.90215 1.73073 1.33316 1.07616 1.17423 1.22054 0.89086 0.92020 0.92933 1.21609 1.02912 0.98117 1.02317 1.22120 0.85369 0.94215 0.96476 1.41033 1.15708 1.25909 1.36861 0.71420 1.21642 0.96515 0.89998 0.87676 1.22390 0.97058 1.00525 1.06398 1.98303 1.69626 1.76301 1.58943 1.22119 0.97997 0.94659 0.97633 0.92967 0.95422 0.94681 0.90846 0.93684 0.83596 0.76292 0.78282 0.94412 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.21 13.49 21.45 0.29 -60.92 16 2 C -0.03 -1.96 5.36 84.66 0.45 -1.50 16 3 Si 1.12 54.62 29.90 68.60 2.05 56.67 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.61 -38.72 8.49 25.60 0.22 -38.50 16 8 H 0.04 2.44 7.77 -2.91 -0.02 2.42 16 9 C 0.03 1.63 2.37 -10.26 -0.02 1.60 16 10 H 0.00 -0.27 7.91 -2.39 -0.02 -0.29 16 11 C -0.10 -5.73 5.69 31.67 0.18 -5.55 16 12 C -0.10 -4.73 5.01 31.32 0.16 -4.57 16 13 C 0.07 3.00 2.79 45.72 0.13 3.13 16 14 H 0.08 3.51 4.94 -2.39 -0.01 3.50 16 15 N -0.60 -25.35 10.28 -306.63 -3.15 -28.50 16 16 C 0.22 6.90 6.51 43.61 0.28 7.18 16 17 C -0.22 -4.67 10.28 23.70 0.24 -4.43 16 18 C 0.15 1.15 11.13 83.25 0.93 2.08 16 19 N -0.59 -2.89 5.22 -195.38 -1.02 -3.91 16 20 H 0.45 -2.20 8.88 -92.71 -0.82 -3.03 16 21 C 0.17 2.14 10.92 83.24 0.91 3.05 16 22 C -0.23 -5.76 6.24 23.74 0.15 -5.62 16 23 Cl -0.06 -1.84 20.74 -2.72 -0.06 -1.90 16 24 C -0.09 -4.56 5.95 31.66 0.19 -4.38 16 25 H 0.26 17.15 5.56 -92.71 -0.52 16.64 16 26 H 0.03 1.59 8.04 -2.39 -0.02 1.57 16 27 H 0.03 1.98 6.67 -2.39 -0.02 1.96 16 28 H 0.07 3.11 5.70 -2.39 -0.01 3.10 16 29 H 0.04 2.01 7.65 -2.39 -0.02 1.99 16 30 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.22 -0.64 8.06 -2.91 -0.02 -0.67 16 32 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.04 2.32 7.94 -2.38 -0.02 2.30 16 Total: -1.00 -89.39 285.06 2.48 -86.91 By element: Atomic # 1 Polarization: -1.41 SS G_CDS: 0.55 Total: -0.85 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 3.81 Total: -47.50 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -3.88 Total: -93.33 kcal Atomic # 14 Polarization: 54.62 SS G_CDS: 2.05 Total: 56.67 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.06 Total: -1.90 kcal Total: -89.39 2.48 -86.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336189269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.475 kcal (2) G-P(sol) polarization free energy of solvation -89.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds