Wall clock time and date at job start Mon Mar 30 2020 07:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48498 * 109.47191 * 270.00182 * 3 2 1 5 5 H 1.48503 * 109.46759 * 30.00151 * 3 2 1 6 6 H 1.48500 * 109.46845 * 150.00009 * 3 2 1 7 7 C 1.37880 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99906 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46997 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47093 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47268 * 180.02562 * 11 10 9 13 13 C 1.48556 * 110.99878 * 285.42140 * 12 11 10 14 14 C 1.54384 * 104.59549 * 200.95920 * 13 12 11 15 15 C 1.54263 * 105.05896 * 23.85008 * 14 13 12 16 16 C 1.48556 * 111.00371 * 170.00170 * 12 11 10 17 17 H 1.08995 * 110.51313 * 40.20458 * 16 12 11 18 18 C 1.50706 * 110.41137 * 277.81938 * 16 12 11 19 19 N 1.29026 * 124.92105 * 138.37102 * 18 16 12 20 20 C 1.31780 * 117.12791 * 179.97438 * 19 18 16 21 21 C 1.33635 * 114.49885 * 0.23267 * 20 19 18 22 22 S 1.70979 * 124.91299 * 318.37156 * 18 16 12 23 23 H 0.96998 * 119.99564 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47442 * 60.00043 * 9 7 2 25 25 H 1.09000 * 109.47073 * 300.00054 * 9 7 2 26 26 H 1.09008 * 109.46712 * 60.00381 * 10 9 7 27 27 H 1.09000 * 109.47343 * 299.99999 * 10 9 7 28 28 H 1.08998 * 109.47281 * 60.00193 * 11 10 9 29 29 H 1.09000 * 109.47138 * 300.00262 * 11 10 9 30 30 H 1.08998 * 110.41796 * 82.18297 * 13 12 11 31 31 H 1.08997 * 110.51214 * 319.78169 * 13 12 11 32 32 H 1.08995 * 110.32261 * 264.95517 * 14 13 12 33 33 H 1.09000 * 110.41166 * 142.79338 * 14 13 12 34 34 H 1.08999 * 110.32372 * 241.10767 * 15 14 13 35 35 H 1.08999 * 110.40596 * 118.93930 * 15 14 13 36 36 H 1.08002 * 122.74687 * 179.97438 * 20 19 18 37 37 H 1.07998 * 126.03694 * 179.76462 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 3.0601 -6.2687 -1.3392 14 6 3.5779 -7.7231 -1.3498 15 6 2.7113 -8.4646 -0.3111 16 6 1.7429 -7.3959 0.2396 17 1 0.7954 -7.4281 -0.2983 18 6 1.5156 -7.6028 1.7150 19 7 0.4338 -8.0742 2.2366 20 6 0.4010 -8.1915 3.5488 21 6 1.5155 -7.7925 4.1688 22 16 2.6542 -7.2469 2.9398 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8726 -3.6047 0.8878 27 1 2.8713 -3.6040 -0.8923 28 1 0.8527 -5.0448 -0.8905 29 1 0.8546 -5.0450 0.8895 30 1 3.8876 -5.5698 -1.4610 31 1 2.3211 -6.1227 -2.1270 32 1 4.6276 -7.7534 -1.0578 33 1 3.4473 -8.1660 -2.3372 34 1 3.3356 -8.8588 0.4907 35 1 2.1538 -9.2711 -0.7874 36 1 -0.4579 -8.5746 4.0798 37 1 1.6883 -7.8037 5.2349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368875405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:13 Heat of formation + Delta-G solvation = 15.776102 kcal Electronic energy + Delta-G solvation = -17772.852471 eV Core-core repulsion = 15061.471333 eV Total energy + Delta-G solvation = -2711.381138 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90898 -39.71312 -36.21654 -34.31789 -32.32000 -31.73970 -29.37888 -28.00449 -25.82219 -24.72606 -22.52165 -22.12514 -21.44530 -20.76737 -18.87253 -18.47558 -17.00968 -16.79017 -16.41241 -16.12610 -15.78118 -15.42186 -15.14246 -14.55460 -14.30617 -14.04283 -13.80271 -13.57665 -13.20268 -12.95782 -12.67702 -12.57093 -12.36671 -12.30438 -12.25576 -12.08772 -11.53846 -11.43219 -11.35681 -11.13510 -10.63352 -10.56301 -10.30080 -9.77101 -9.62017 -8.20625 -6.32105 -0.21779 0.50891 0.95228 1.39835 1.41658 1.52996 1.86811 2.40554 2.70247 3.12612 3.37264 3.61598 3.77428 4.00963 4.15108 4.27389 4.30428 4.37116 4.42223 4.57547 4.60762 4.65513 4.73916 4.87224 4.94435 4.98877 5.06868 5.11223 5.21544 5.24278 5.27567 5.50522 5.69771 5.81304 5.84348 5.92976 6.24664 6.80086 6.84673 7.37417 8.91605 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.004588 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.902825 B = 6101.310143 C = 6836.646178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.082 4.082 11 C 0.062 3.938 12 N -0.509 5.509 13 C 0.028 3.972 14 C -0.112 4.112 15 C -0.106 4.106 16 C 0.128 3.872 17 H 0.068 0.932 18 C 0.044 3.956 19 N -0.510 5.510 20 C 0.017 3.983 21 C -0.269 4.269 22 S 0.173 5.827 23 H 0.263 0.737 24 H -0.011 1.011 25 H -0.015 1.015 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.195 0.805 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.411 -19.818 2.997 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.120 4.120 11 C -0.067 4.067 12 N -0.233 5.233 13 C -0.099 4.099 14 C -0.150 4.150 15 C -0.145 4.145 16 C 0.016 3.984 17 H 0.086 0.914 18 C -0.233 4.233 19 N -0.226 5.226 20 C -0.134 4.134 21 C -0.408 4.408 22 S 0.427 5.573 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.003 0.997 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.212 0.788 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.236 -19.329 3.071 21.233 hybrid contribution -1.784 0.738 0.035 1.931 sum 6.452 -18.590 3.106 19.922 Atomic orbital electron populations 1.70112 1.07937 1.27780 1.51790 1.26018 0.95753 1.03496 0.94663 0.85420 0.78665 0.78218 0.78596 1.19576 1.20792 1.18608 1.21670 0.93574 0.92175 1.50432 0.92013 1.18970 0.94408 0.93380 0.94429 1.21288 0.97773 0.91924 1.00967 1.22127 0.93687 0.91364 0.99479 1.65265 1.27506 1.00998 1.29542 1.23231 0.99312 0.98929 0.88427 1.22305 1.00335 0.92581 0.99754 1.22366 0.96639 0.96265 0.99259 1.21143 0.98400 0.91961 0.86863 0.91374 1.26935 0.93170 1.01764 1.01402 1.66261 1.24951 1.17915 1.13434 1.22134 1.00382 1.02831 0.88015 1.27602 0.98115 1.08963 1.06145 1.84103 1.18879 1.57506 0.96849 0.92790 0.99220 0.99663 0.92945 0.92510 0.94955 0.93433 0.89413 0.93499 0.89580 0.88877 0.90488 0.89117 0.78828 0.77791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.08 -3.50 5.27 30.60 0.16 -3.34 16 11 C 0.06 2.28 4.78 86.30 0.41 2.69 16 12 N -0.51 -14.94 4.80 -861.06 -4.13 -19.07 16 13 C 0.03 0.68 5.91 86.45 0.51 1.19 16 14 C -0.11 -1.90 7.00 31.49 0.22 -1.68 16 15 C -0.11 -2.03 6.54 31.49 0.21 -1.82 16 16 C 0.13 3.40 2.78 44.32 0.12 3.52 16 17 H 0.07 1.96 8.00 -2.39 -0.02 1.94 16 18 C 0.04 1.26 5.86 88.52 0.52 1.77 16 19 N -0.51 -15.12 10.54 -191.44 -2.02 -17.14 16 20 C 0.02 0.41 11.35 83.66 0.95 1.36 16 21 C -0.27 -5.69 11.37 66.77 0.76 -4.93 16 22 S 0.17 4.28 22.95 -56.49 -1.30 2.99 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 26 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.06 2.32 7.47 -2.39 -0.02 2.30 16 28 H 0.03 1.20 7.77 -2.39 -0.02 1.18 16 29 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 30 H 0.09 2.13 7.85 -2.39 -0.02 2.11 16 31 H 0.05 1.15 7.76 -2.39 -0.02 1.13 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.42 7.85 -2.39 -0.02 1.40 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.19 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -69.02 318.32 0.61 -68.42 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.03 Total: 6.55 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 4.71 Total: -30.60 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -5.86 Total: -94.25 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.30 Total: 2.99 kcal Total: -69.02 0.61 -68.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368875405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.195 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds