Wall clock time and date at job start Mon Mar 30 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00119 * 2 1 4 4 H 1.48502 * 109.46949 * 240.00326 * 3 2 1 5 5 H 1.48502 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47066 * 120.00481 * 3 2 1 7 7 C 1.37880 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99903 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.67360 * 61.78298 * 9 7 2 11 11 C 1.54885 * 110.75954 * 298.54934 * 9 7 2 12 12 C 1.54263 * 104.19795 * 203.74212 * 11 9 7 13 13 C 1.53873 * 106.60025 * 23.60911 * 12 11 9 14 14 H 1.08999 * 110.03175 * 119.33299 * 13 12 11 15 15 N 1.46495 * 110.03621 * 240.71769 * 13 12 11 16 16 C 1.39177 * 119.99838 * 273.54672 * 15 13 12 17 17 C 1.39529 * 120.85810 * 179.97438 * 16 15 13 18 18 C 1.37847 * 119.09880 * 179.71855 * 17 16 15 19 19 N 1.32024 * 120.85864 * 0.26179 * 18 17 16 20 20 C 1.32076 * 121.89262 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.59597 * 179.97438 * 20 19 18 22 22 C 1.38083 * 120.80990 * 0.02562 * 20 19 18 23 23 C 1.54270 * 106.59610 * 0.02562 * 13 12 11 24 24 H 0.96997 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.09003 * 110.48601 * 85.06081 * 11 9 7 26 26 H 1.09000 * 110.48609 * 322.41984 * 11 9 7 27 27 H 1.09003 * 110.03652 * 264.32087 * 12 11 9 28 28 H 1.08999 * 110.07453 * 142.91489 * 12 11 9 29 29 H 0.96996 * 120.00130 * 93.54012 * 15 13 12 30 30 H 1.08002 * 120.45313 * 0.02562 * 17 16 15 31 31 H 1.08001 * 119.56914 * 180.23193 * 18 17 16 32 32 H 1.07995 * 120.47329 * 179.97438 * 22 20 19 33 33 H 1.08995 * 110.48522 * 95.06691 * 23 13 12 34 34 H 1.09002 * 110.48515 * 217.70886 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6407 -2.5911 -0.8990 11 6 0.3776 -2.6287 1.2720 12 6 0.1830 -4.1493 1.4440 13 6 1.3580 -4.8278 0.7183 14 1 1.9418 -5.4186 1.4242 15 7 0.8555 -5.6852 -0.3580 16 6 0.4854 -6.9990 -0.0858 17 6 0.0041 -7.8311 -1.0971 18 6 -0.3464 -9.1280 -0.7881 19 7 -0.2363 -9.5834 0.4462 20 6 0.2103 -8.8265 1.4321 21 17 0.3302 -9.4866 3.0332 22 6 0.5821 -7.5162 1.2051 23 6 2.2260 -3.6957 0.1311 24 1 -0.4850 0.8400 0.0004 25 1 -0.5834 -2.1351 1.1270 26 1 0.8960 -2.2105 2.1347 27 1 -0.7613 -4.4581 0.9955 28 1 0.1965 -4.4109 2.5021 29 1 0.7805 -5.3373 -1.2603 30 1 -0.0880 -7.4656 -2.1092 31 1 -0.7163 -9.7798 -1.5657 32 1 0.9462 -6.9019 2.0153 33 1 3.0428 -3.4502 0.8098 34 1 2.6140 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378868490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:51 Heat of formation + Delta-G solvation = 12.836882 kcal Electronic energy + Delta-G solvation = -17455.410302 eV Core-core repulsion = 14606.024909 eV Total energy + Delta-G solvation = -2849.385393 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.22287 -38.03096 -36.58732 -34.83538 -32.42859 -30.96281 -30.07249 -28.33223 -26.86179 -24.28055 -23.25421 -22.54182 -19.56595 -19.38850 -18.02140 -16.60809 -16.43829 -15.77255 -14.94583 -14.75980 -14.63808 -14.46833 -14.02742 -13.66058 -13.16108 -12.66187 -12.13513 -11.80690 -11.71355 -11.46584 -11.27848 -11.07368 -10.89298 -10.62665 -10.53508 -10.37333 -9.97013 -9.66447 -9.54511 -9.27670 -8.98806 -8.90633 -8.45316 -7.72746 -6.08616 -4.12671 1.04261 1.51188 1.86452 3.26549 3.32091 3.34104 3.45486 3.79111 4.37271 4.55100 4.98662 5.11507 5.12637 5.23314 5.31678 5.44241 5.50174 5.69131 5.77494 5.95341 6.11658 6.29915 6.41641 6.49054 6.55909 6.59410 6.78893 7.05547 7.17803 7.38357 7.62271 7.73808 7.77646 7.89701 7.92892 8.33836 8.89344 9.52399 11.00301 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039612 B = 0.003881 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.694104 B = 7213.096854 C = 7545.931953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.028 0.972 11 C -0.101 4.101 12 C -0.141 4.141 13 C 0.137 3.863 14 H 0.071 0.929 15 N -0.710 5.710 16 C 0.274 3.726 17 C -0.256 4.256 18 C 0.154 3.846 19 N -0.534 5.534 20 C 0.216 3.784 21 Cl -0.044 7.044 22 C -0.238 4.238 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.406 0.594 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.071 0.929 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -14.399 0.455 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.046 0.954 11 C -0.139 4.139 12 C -0.180 4.180 13 C 0.033 3.967 14 H 0.089 0.911 15 N -0.335 5.335 16 C 0.157 3.843 17 C -0.282 4.282 18 C -0.001 4.001 19 N -0.249 5.249 20 C 0.053 3.947 21 Cl -0.016 7.016 22 C -0.265 4.265 23 C -0.162 4.162 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.242 0.758 30 H 0.154 0.846 31 H 0.177 0.823 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.167 -15.028 0.944 15.059 hybrid contribution 0.595 1.909 -0.336 2.028 sum 0.428 -13.119 0.609 13.140 Atomic orbital electron populations 1.69939 1.05903 1.26667 1.50166 1.24967 0.94826 0.99053 0.94919 0.86698 0.79646 0.83260 0.78628 1.20303 1.21314 1.20256 1.21070 0.92782 0.90501 1.51360 0.92663 1.19578 0.91876 0.91283 0.93897 0.95353 1.22307 1.01763 0.90088 0.99755 1.22794 0.97240 0.99404 0.98594 1.21946 0.95307 0.91089 0.88371 0.91122 1.45186 1.67728 1.08123 1.12473 1.17990 0.88417 0.85425 0.92446 1.21652 1.10512 0.96031 1.00015 1.22236 0.93185 0.92798 0.91913 1.67000 1.19607 1.38152 1.00191 1.21192 0.96280 0.89351 0.87865 1.98384 1.96197 1.87046 1.19948 1.21223 1.12086 0.95755 0.97405 1.22784 0.98664 0.95308 0.99439 0.92952 0.91189 0.93262 0.92404 0.92949 0.75775 0.84581 0.82342 0.84047 0.91053 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 12.02 55.43 0.67 -23.89 16 2 C 0.06 1.71 5.33 -17.82 -0.10 1.62 16 3 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.45 8.54 -34.44 -0.29 -13.74 16 8 H 0.06 1.41 7.78 -52.49 -0.41 1.00 16 9 C 0.05 1.18 2.82 -89.77 -0.25 0.93 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.10 -2.19 5.57 -25.08 -0.14 -2.33 16 12 C -0.14 -2.45 6.59 -25.62 -0.17 -2.62 16 13 C 0.14 2.15 2.92 -66.81 -0.20 1.95 16 14 H 0.07 1.03 6.58 -51.93 -0.34 0.69 16 15 N -0.71 -9.89 5.11 -50.93 -0.26 -10.15 16 16 C 0.27 3.69 6.69 -83.61 -0.56 3.13 16 17 C -0.26 -2.99 10.00 -39.24 -0.39 -3.38 16 18 C 0.15 1.79 11.17 -17.61 -0.20 1.60 16 19 N -0.53 -7.51 10.34 -10.46 -0.11 -7.62 16 20 C 0.22 3.04 7.27 -17.50 -0.13 2.92 16 21 Cl -0.04 -0.56 29.10 -51.86 -1.51 -2.07 16 22 C -0.24 -3.29 9.03 -39.21 -0.35 -3.64 16 23 C -0.12 -2.25 5.85 -25.06 -0.15 -2.40 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.07 1.69 7.37 -51.93 -0.38 1.31 16 26 H 0.05 1.11 8.04 -51.93 -0.42 0.69 16 27 H 0.06 1.02 7.92 -51.93 -0.41 0.61 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.41 5.36 8.59 -40.82 -0.35 5.01 16 30 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.14 1.90 6.40 -52.49 -0.34 1.56 16 33 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 34 H 0.05 0.93 7.98 -51.93 -0.41 0.52 16 LS Contribution 298.63 15.07 4.50 4.50 Total: -1.00 -27.51 298.63 -8.96 -36.47 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.31 Total: 3.19 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.92 Total: -15.97 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.30 Total: -41.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.51 -8.96 -36.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378868490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.309 kcal (2) G-P(sol) polarization free energy of solvation -27.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds