Wall clock time and date at job start Mon Mar 30 2020 06:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00119 * 2 1 4 4 H 1.48502 * 109.46949 * 240.00326 * 3 2 1 5 5 H 1.48502 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47066 * 120.00481 * 3 2 1 7 7 C 1.37880 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99903 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.67360 * 61.78298 * 9 7 2 11 11 C 1.54885 * 110.75954 * 298.54934 * 9 7 2 12 12 C 1.54263 * 104.19795 * 203.74212 * 11 9 7 13 13 C 1.53873 * 106.60025 * 23.60911 * 12 11 9 14 14 H 1.08999 * 110.03175 * 119.33299 * 13 12 11 15 15 N 1.46495 * 110.03621 * 240.71769 * 13 12 11 16 16 C 1.39177 * 119.99838 * 273.54672 * 15 13 12 17 17 C 1.39529 * 120.85810 * 179.97438 * 16 15 13 18 18 C 1.37847 * 119.09880 * 179.71855 * 17 16 15 19 19 N 1.32024 * 120.85864 * 0.26179 * 18 17 16 20 20 C 1.32076 * 121.89262 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.59597 * 179.97438 * 20 19 18 22 22 C 1.38083 * 120.80990 * 0.02562 * 20 19 18 23 23 C 1.54270 * 106.59610 * 0.02562 * 13 12 11 24 24 H 0.96997 * 119.99822 * 359.97438 * 1 2 3 25 25 H 1.09003 * 110.48601 * 85.06081 * 11 9 7 26 26 H 1.09000 * 110.48609 * 322.41984 * 11 9 7 27 27 H 1.09003 * 110.03652 * 264.32087 * 12 11 9 28 28 H 1.08999 * 110.07453 * 142.91489 * 12 11 9 29 29 H 0.96996 * 120.00130 * 93.54012 * 15 13 12 30 30 H 1.08002 * 120.45313 * 0.02562 * 17 16 15 31 31 H 1.08001 * 119.56914 * 180.23193 * 18 17 16 32 32 H 1.07995 * 120.47329 * 179.97438 * 22 20 19 33 33 H 1.08995 * 110.48522 * 95.06691 * 23 13 12 34 34 H 1.09002 * 110.48515 * 217.70886 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6407 -2.5911 -0.8990 11 6 0.3776 -2.6287 1.2720 12 6 0.1830 -4.1493 1.4440 13 6 1.3580 -4.8278 0.7183 14 1 1.9418 -5.4186 1.4242 15 7 0.8555 -5.6852 -0.3580 16 6 0.4854 -6.9990 -0.0858 17 6 0.0041 -7.8311 -1.0971 18 6 -0.3464 -9.1280 -0.7881 19 7 -0.2363 -9.5834 0.4462 20 6 0.2103 -8.8265 1.4321 21 17 0.3302 -9.4866 3.0332 22 6 0.5821 -7.5162 1.2051 23 6 2.2260 -3.6957 0.1311 24 1 -0.4850 0.8400 0.0004 25 1 -0.5834 -2.1351 1.1270 26 1 0.8960 -2.2105 2.1347 27 1 -0.7613 -4.4581 0.9955 28 1 0.1965 -4.4109 2.5021 29 1 0.7805 -5.3373 -1.2603 30 1 -0.0880 -7.4656 -2.1092 31 1 -0.7163 -9.7798 -1.5657 32 1 0.9462 -6.9019 2.0153 33 1 3.0428 -3.4502 0.8098 34 1 2.6140 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378868490.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:51 Heat of formation + Delta-G solvation = -2.321366 kcal Electronic energy + Delta-G solvation = -17456.067613 eV Core-core repulsion = 14606.024909 eV Total energy + Delta-G solvation = -2850.042704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.24167 -39.39703 -37.59150 -36.18295 -34.24521 -31.93419 -31.29316 -29.97505 -28.31867 -25.98829 -24.36489 -23.60466 -21.16314 -20.88062 -19.12347 -18.29964 -17.69165 -16.76813 -16.57188 -16.22446 -15.81311 -15.55596 -15.22392 -14.91295 -14.64350 -14.21123 -13.48661 -13.40000 -12.95199 -12.83436 -12.65028 -12.52772 -12.41488 -12.26175 -11.98427 -11.78111 -11.45240 -11.38658 -11.00059 -10.80898 -10.54087 -10.45273 -9.94838 -8.80847 -8.10965 -6.20871 0.07904 0.51051 0.87711 1.42743 1.43293 1.50499 2.35173 2.43996 2.82267 3.20259 3.65616 3.84909 4.01086 4.03489 4.14313 4.21694 4.30335 4.58050 4.69782 4.78519 4.85476 4.90724 5.03582 5.06312 5.11044 5.16434 5.40035 5.43317 5.58177 5.66428 5.93303 6.00739 6.21774 6.38742 6.68340 6.90265 6.93687 7.47322 8.96602 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.039612 B = 0.003881 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.694104 B = 7213.096854 C = 7545.931953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.003 0.997 11 C -0.094 4.094 12 C -0.130 4.130 13 C 0.152 3.848 14 H 0.091 0.909 15 N -0.711 5.711 16 C 0.263 3.737 17 C -0.249 4.249 18 C 0.152 3.848 19 N -0.552 5.552 20 C 0.203 3.797 21 Cl -0.041 7.041 22 C -0.245 4.245 23 C -0.113 4.113 24 H 0.259 0.741 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.410 0.590 30 H 0.161 0.839 31 H 0.193 0.807 32 H 0.143 0.857 33 H 0.071 0.929 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -15.638 0.025 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.073 0.927 9 C 0.025 3.975 10 H 0.021 0.979 11 C -0.133 4.133 12 C -0.169 4.169 13 C 0.047 3.953 14 H 0.109 0.891 15 N -0.337 5.337 16 C 0.147 3.853 17 C -0.274 4.274 18 C -0.002 4.002 19 N -0.268 5.268 20 C 0.040 3.960 21 Cl -0.012 7.012 22 C -0.272 4.272 23 C -0.151 4.151 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.246 0.754 30 H 0.178 0.822 31 H 0.210 0.790 32 H 0.161 0.839 33 H 0.089 0.911 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.531 -16.292 0.508 16.309 hybrid contribution 0.349 2.251 -0.235 2.290 sum 0.881 -14.041 0.274 14.071 Atomic orbital electron populations 1.70074 1.07188 1.27099 1.51408 1.25708 0.95554 1.02251 0.94929 0.85766 0.78458 0.79514 0.78843 1.19655 1.21404 1.19674 1.21523 0.93089 0.92106 1.50496 0.92683 1.19545 0.92673 0.92170 0.93124 0.97907 1.22093 0.99485 0.93087 0.98633 1.22669 0.98021 0.96054 1.00123 1.21643 0.94118 0.90703 0.88827 0.89137 1.44987 1.68391 1.08229 1.12109 1.18145 0.88984 0.85255 0.92915 1.21953 1.08987 0.95714 1.00756 1.22833 0.92259 0.93322 0.91812 1.67053 1.19986 1.38701 1.01079 1.21335 0.96805 0.89626 0.88280 1.98380 1.96196 1.86983 1.19681 1.21291 1.12351 0.95827 0.97757 1.22603 0.97887 0.94201 1.00393 0.93255 0.94573 0.94791 0.92666 0.91159 0.75361 0.82153 0.78996 0.83898 0.91058 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 12.02 21.45 0.26 -51.75 16 2 C 0.01 0.78 5.33 84.66 0.45 1.23 16 3 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.53 -27.91 8.54 25.60 0.22 -27.70 16 8 H 0.05 2.80 7.78 -2.91 -0.02 2.78 16 9 C 0.04 1.99 2.82 -10.24 -0.03 1.96 16 10 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 11 C -0.09 -4.17 5.57 31.67 0.18 -4.00 16 12 C -0.13 -4.38 6.59 31.32 0.21 -4.17 16 13 C 0.15 4.48 2.92 45.72 0.13 4.61 16 14 H 0.09 2.38 6.58 -2.39 -0.02 2.37 16 15 N -0.71 -18.31 5.11 -315.03 -1.61 -19.92 16 16 C 0.26 6.45 6.69 38.57 0.26 6.71 16 17 C -0.25 -5.06 10.00 22.49 0.22 -4.83 16 18 C 0.15 3.09 11.17 84.57 0.94 4.04 16 19 N -0.55 -14.35 10.34 -187.00 -1.93 -16.28 16 20 C 0.20 5.35 7.27 84.62 0.61 5.97 16 21 Cl -0.04 -0.99 29.10 -2.72 -0.08 -1.07 16 22 C -0.25 -6.31 9.03 22.51 0.20 -6.10 16 23 C -0.11 -3.96 5.85 31.68 0.19 -3.78 16 24 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 25 H 0.04 1.80 7.37 -2.39 -0.02 1.79 16 26 H 0.03 1.56 8.04 -2.39 -0.02 1.54 16 27 H 0.05 1.89 7.92 -2.39 -0.02 1.87 16 28 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.41 10.01 8.59 -92.71 -0.80 9.22 16 30 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.14 3.54 6.40 -2.91 -0.02 3.52 16 33 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 34 H 0.07 2.15 7.98 -2.39 -0.02 2.13 16 Total: -1.00 -59.45 298.63 2.57 -56.88 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.32 Total: 13.80 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 3.59 Total: -26.06 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -3.28 Total: -87.96 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -59.45 2.57 -56.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378868490.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.557 kcal (2) G-P(sol) polarization free energy of solvation -59.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds