Wall clock time and date at job start Mon Mar 30 2020 06:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47749 * 2 1 4 4 C 1.33393 * 125.20278 * 89.99516 * 3 2 1 5 5 C 1.38430 * 114.91658 * 179.79715 * 4 3 2 6 6 C 1.33381 * 114.92066 * 0.43268 * 5 4 3 7 7 C 1.50706 * 125.19936 * 179.86177 * 6 5 4 8 8 H 1.08994 * 110.27358 * 24.07940 * 7 6 5 9 9 C 1.54944 * 110.39234 * 261.93035 * 7 6 5 10 10 C 1.55309 * 100.94264 * 204.60013 * 9 7 6 11 11 C 1.54378 * 102.25014 * 34.13276 * 10 9 7 12 12 C 1.53005 * 109.82837 * 219.13100 * 11 10 9 13 13 C 1.50697 * 109.83134 * 98.16329 * 11 10 9 14 14 H 1.08007 * 120.00011 * 0.40424 * 13 11 10 15 15 C 1.37876 * 120.00414 * 180.40919 * 13 11 10 16 16 N 1.31517 * 119.99819 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00236 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47005 * 90.00004 * 17 15 13 19 19 H 1.48499 * 109.47289 * 210.00136 * 17 15 13 20 20 H 1.48505 * 109.47098 * 330.00181 * 17 15 13 21 21 O 1.43236 * 107.59193 * 338.64269 * 11 10 9 22 22 S 1.75886 * 109.59844 * 359.59373 * 6 5 4 23 23 H 1.08992 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46852 * 300.00820 * 1 2 3 25 25 H 1.09001 * 109.46541 * 59.99754 * 1 2 3 26 26 H 1.08999 * 109.47334 * 239.99325 * 2 1 3 27 27 H 1.09004 * 109.46907 * 119.99888 * 2 1 3 28 28 H 1.07995 * 122.53671 * 0.02562 * 4 3 2 29 29 H 1.07999 * 122.53599 * 180.27569 * 5 4 3 30 30 H 1.09000 * 111.12659 * 322.51781 * 9 7 6 31 31 H 1.08999 * 111.12551 * 86.63555 * 9 7 6 32 32 H 1.08997 * 110.85030 * 152.32660 * 10 9 7 33 33 H 1.09005 * 110.84112 * 275.74386 * 10 9 7 34 34 H 1.09002 * 109.47234 * 179.58879 * 12 11 10 35 35 H 1.09002 * 109.47126 * 299.59164 * 12 11 10 36 36 H 1.09002 * 109.47243 * 59.59045 * 12 11 10 37 37 H 0.96999 * 120.00155 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2888 2.1457 1.0900 5 6 2.7472 3.4283 0.8428 6 6 2.8544 3.7479 -0.4477 7 6 3.3251 5.0781 -0.9771 8 1 3.9498 5.5791 -0.2377 9 6 2.1141 5.9695 -1.3509 10 6 2.7559 6.9113 -2.4060 11 6 3.7741 5.9808 -3.0994 12 6 5.0623 6.7509 -3.3966 13 6 3.1885 5.4469 -4.3812 14 1 2.1943 5.7405 -4.6842 15 6 3.9219 4.5835 -5.1671 16 7 5.1323 4.2255 -4.7979 17 14 3.1957 3.9211 -6.7557 18 1 3.5374 4.8351 -7.8750 19 1 3.7530 2.5723 -7.0302 20 1 1.7193 3.8294 -6.6246 21 8 4.0510 4.8980 -2.2035 22 16 2.3699 2.3769 -1.4372 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1527 1.7599 2.0894 29 1 2.9965 4.1188 1.6349 30 1 1.3110 5.3774 -1.7896 31 1 1.7582 6.5309 -0.4871 32 1 2.0082 7.2655 -3.1156 33 1 3.2579 7.7497 -1.9232 34 1 5.7795 6.0869 -3.8792 35 1 4.8406 7.5886 -4.0579 36 1 5.4848 7.1260 -2.4644 37 1 5.6484 3.6184 -5.3510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381055540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:09 Heat of formation + Delta-G solvation = -25.486676 kcal Electronic energy + Delta-G solvation = -18415.030409 eV Core-core repulsion = 15669.567231 eV Total energy + Delta-G solvation = -2745.463177 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.62772 -37.38787 -33.85304 -32.77115 -30.99317 -30.31437 -27.88612 -25.33690 -24.92738 -23.03155 -21.86777 -20.79934 -19.42852 -18.47387 -16.68602 -16.48927 -15.15207 -14.86232 -14.41193 -14.08899 -13.80378 -13.42717 -13.15040 -12.75381 -12.58374 -12.33461 -11.97396 -11.71401 -11.61465 -11.24730 -11.21392 -10.94302 -10.86082 -10.67470 -10.56952 -10.45307 -10.27431 -10.00666 -9.92463 -9.60666 -9.13809 -8.46777 -8.08918 -7.86951 -7.77738 -5.92767 -4.08926 1.49926 2.20041 2.69665 3.15871 3.30831 3.38508 3.41065 4.44031 4.91792 4.97113 5.15734 5.36050 5.38404 5.51678 5.52990 5.62306 5.74876 5.84548 5.87249 5.97037 6.05564 6.15986 6.21936 6.27529 6.33558 6.55996 6.59964 6.74595 6.79432 6.84745 6.92416 6.98311 7.13721 7.35091 7.79932 8.10622 8.38067 8.61103 9.04802 9.61998 11.09045 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.007339 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.998983 B = 3814.157006 C = 4749.536013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C -0.217 4.217 4 C -0.138 4.138 5 C -0.160 4.160 6 C -0.150 4.150 7 C 0.138 3.862 8 H 0.065 0.935 9 C -0.137 4.137 10 C -0.142 4.142 11 C 0.227 3.773 12 C -0.140 4.140 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.084 3.916 16 N -0.858 5.858 17 Si 0.882 3.118 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 O -0.343 6.343 22 S 0.175 5.825 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 -3.447 9.673 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.335 4.335 4 C -0.169 4.169 5 C -0.190 4.190 6 C -0.269 4.269 7 C 0.077 3.923 8 H 0.082 0.918 9 C -0.176 4.176 10 C -0.180 4.180 11 C 0.190 3.810 12 C -0.198 4.198 13 C -0.568 4.568 14 H 0.076 0.924 15 C -0.122 4.122 16 N -0.494 5.494 17 Si 0.709 3.291 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 O -0.262 6.262 22 S 0.441 5.559 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.030 0.970 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.007 -3.994 7.994 10.768 hybrid contribution -0.339 0.117 0.795 0.872 sum -6.347 -3.877 8.789 11.513 Atomic orbital electron populations 1.21783 0.94857 1.01381 1.02398 1.19981 0.95735 0.90408 1.02582 1.24723 1.09777 1.01030 0.97963 1.19834 1.04331 0.94224 0.98547 1.19844 1.06456 0.97184 0.95543 1.24831 1.05630 1.00169 0.96260 1.21094 0.92260 0.88164 0.90763 0.91756 1.23161 0.98027 0.97833 0.98536 1.23232 0.99648 0.97833 0.97302 1.19686 0.90381 0.82980 0.87942 1.21995 1.00581 0.99175 0.98019 1.21184 1.01584 1.29646 1.04412 0.92411 1.24964 0.94631 0.95451 0.97143 1.69951 1.09702 1.32716 1.37033 0.86772 0.79677 0.78522 0.84083 1.20638 1.21074 1.19804 1.88838 1.66528 1.48318 1.22535 1.84917 1.61275 1.03514 1.06177 0.92531 0.92555 0.92408 0.91135 0.90782 0.85560 0.85191 0.90879 0.91953 0.91127 0.92895 0.89147 0.94449 0.96980 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.90 37.16 0.37 -1.23 16 2 C -0.05 -0.60 6.43 -27.88 -0.18 -0.77 16 3 C -0.22 -3.42 5.76 -36.00 -0.21 -3.62 16 4 C -0.14 -2.11 10.05 -41.20 -0.41 -2.52 16 5 C -0.16 -2.66 10.05 -41.21 -0.41 -3.07 16 6 C -0.15 -2.92 5.57 -36.00 -0.20 -3.12 16 7 C 0.14 2.85 3.88 -26.85 -0.10 2.75 16 8 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 9 C -0.14 -2.61 6.56 -24.48 -0.16 -2.77 16 10 C -0.14 -2.93 6.07 -24.78 -0.15 -3.08 16 11 C 0.23 5.63 0.82 -91.05 -0.07 5.55 16 12 C -0.14 -3.40 8.53 37.16 0.32 -3.08 16 13 C -0.53 -14.37 8.23 -34.44 -0.28 -14.66 16 14 H 0.06 1.55 7.48 -52.48 -0.39 1.16 16 15 C 0.08 2.30 5.26 -17.82 -0.09 2.21 16 16 N -0.86 -24.51 10.93 55.43 0.61 -23.90 16 17 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 O -0.34 -8.71 9.59 -35.23 -0.34 -9.05 16 22 S 0.17 3.40 23.04 -107.50 -2.48 0.92 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.43 7.60 -51.93 -0.39 1.03 16 33 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 34 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -29.23 316.26 -9.77 -39.01 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.71 Total: -0.46 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -1.60 Total: -27.44 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.61 Total: -23.90 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.34 Total: -9.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -2.48 Total: 0.92 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.23 -9.77 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381055540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.519 kcal (2) G-P(sol) polarization free energy of solvation -29.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds