Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47749 * 2 1 4 4 C 1.33393 * 125.20278 * 89.99516 * 3 2 1 5 5 C 1.38430 * 114.91658 * 179.79715 * 4 3 2 6 6 C 1.33381 * 114.92066 * 0.43268 * 5 4 3 7 7 C 1.50706 * 125.19936 * 179.86177 * 6 5 4 8 8 H 1.08994 * 110.27358 * 24.07940 * 7 6 5 9 9 C 1.54944 * 110.39234 * 261.93035 * 7 6 5 10 10 C 1.55309 * 100.94264 * 204.60013 * 9 7 6 11 11 C 1.54378 * 102.25014 * 34.13276 * 10 9 7 12 12 C 1.53005 * 109.82837 * 219.13100 * 11 10 9 13 13 C 1.50697 * 109.83134 * 98.16329 * 11 10 9 14 14 H 1.08007 * 120.00011 * 0.40424 * 13 11 10 15 15 C 1.37876 * 120.00414 * 180.40919 * 13 11 10 16 16 N 1.31517 * 119.99819 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00236 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47005 * 90.00004 * 17 15 13 19 19 H 1.48499 * 109.47289 * 210.00136 * 17 15 13 20 20 H 1.48505 * 109.47098 * 330.00181 * 17 15 13 21 21 O 1.43236 * 107.59193 * 338.64269 * 11 10 9 22 22 S 1.75886 * 109.59844 * 359.59373 * 6 5 4 23 23 H 1.08992 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46852 * 300.00820 * 1 2 3 25 25 H 1.09001 * 109.46541 * 59.99754 * 1 2 3 26 26 H 1.08999 * 109.47334 * 239.99325 * 2 1 3 27 27 H 1.09004 * 109.46907 * 119.99888 * 2 1 3 28 28 H 1.07995 * 122.53671 * 0.02562 * 4 3 2 29 29 H 1.07999 * 122.53599 * 180.27569 * 5 4 3 30 30 H 1.09000 * 111.12659 * 322.51781 * 9 7 6 31 31 H 1.08999 * 111.12551 * 86.63555 * 9 7 6 32 32 H 1.08997 * 110.85030 * 152.32660 * 10 9 7 33 33 H 1.09005 * 110.84112 * 275.74386 * 10 9 7 34 34 H 1.09002 * 109.47234 * 179.58879 * 12 11 10 35 35 H 1.09002 * 109.47126 * 299.59164 * 12 11 10 36 36 H 1.09002 * 109.47243 * 59.59045 * 12 11 10 37 37 H 0.96999 * 120.00155 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2888 2.1457 1.0900 5 6 2.7472 3.4283 0.8428 6 6 2.8544 3.7479 -0.4477 7 6 3.3251 5.0781 -0.9771 8 1 3.9498 5.5791 -0.2377 9 6 2.1141 5.9695 -1.3509 10 6 2.7559 6.9113 -2.4060 11 6 3.7741 5.9808 -3.0994 12 6 5.0623 6.7509 -3.3966 13 6 3.1885 5.4469 -4.3812 14 1 2.1943 5.7405 -4.6842 15 6 3.9219 4.5835 -5.1671 16 7 5.1323 4.2255 -4.7979 17 14 3.1957 3.9211 -6.7557 18 1 3.5374 4.8351 -7.8750 19 1 3.7530 2.5723 -7.0302 20 1 1.7193 3.8294 -6.6246 21 8 4.0510 4.8980 -2.2035 22 16 2.3699 2.3769 -1.4372 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.1527 1.7599 2.0894 29 1 2.9965 4.1188 1.6349 30 1 1.3110 5.3774 -1.7896 31 1 1.7582 6.5309 -0.4871 32 1 2.0082 7.2655 -3.1156 33 1 3.2579 7.7497 -1.9232 34 1 5.7795 6.0869 -3.8792 35 1 4.8406 7.5886 -4.0579 36 1 5.4848 7.1260 -2.4644 37 1 5.6484 3.6184 -5.3510 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381055540.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = -40.459617 kcal Electronic energy + Delta-G solvation = -18415.679684 eV Core-core repulsion = 15669.567231 eV Total energy + Delta-G solvation = -2746.112453 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28765 -38.71114 -35.28583 -34.42707 -32.73225 -31.97886 -29.32187 -27.28626 -26.39986 -24.44575 -23.02400 -22.33376 -21.28835 -19.79571 -18.59736 -17.88656 -16.66814 -16.60636 -16.08585 -15.50157 -15.09599 -14.80731 -14.59593 -14.36738 -14.13082 -13.62280 -13.53915 -13.20650 -13.11798 -12.85516 -12.76834 -12.56498 -12.29094 -12.21583 -12.17792 -12.06586 -11.92435 -11.68810 -11.42131 -11.23140 -10.96258 -10.54831 -9.84454 -9.30545 -9.21527 -8.00123 -6.21770 0.18455 0.84138 1.36460 1.37970 1.40165 1.48340 1.90578 2.43243 3.12657 3.59134 3.88253 3.92959 3.97714 4.21524 4.23365 4.45775 4.52406 4.57705 4.67533 4.74746 4.78242 4.91497 4.92889 5.01439 5.03354 5.06519 5.09657 5.22880 5.28428 5.35243 5.39343 5.43957 5.50236 5.68910 5.77907 6.12337 6.37177 6.67155 7.13271 7.53079 9.00225 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.007339 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.998983 B = 3814.157006 C = 4749.536013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.194 4.194 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.179 4.179 7 C 0.131 3.869 8 H 0.078 0.922 9 C -0.126 4.126 10 C -0.137 4.137 11 C 0.213 3.787 12 C -0.134 4.134 13 C -0.543 4.543 14 H 0.050 0.950 15 C 0.039 3.961 16 N -0.886 5.886 17 Si 0.935 3.065 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.271 1.271 21 O -0.375 6.375 22 S 0.078 5.922 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.029 0.971 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 -3.746 11.999 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C -0.312 4.312 4 C -0.171 4.171 5 C -0.171 4.171 6 C -0.297 4.297 7 C 0.071 3.929 8 H 0.096 0.904 9 C -0.164 4.164 10 C -0.175 4.175 11 C 0.175 3.825 12 C -0.192 4.192 13 C -0.581 4.581 14 H 0.069 0.931 15 C -0.164 4.164 16 N -0.523 5.523 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.196 1.196 21 O -0.295 6.295 22 S 0.343 5.657 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.182 0.818 29 H 0.176 0.824 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.196 -4.279 10.324 13.292 hybrid contribution 0.014 0.169 0.195 0.258 sum -7.182 -4.111 10.519 13.384 Atomic orbital electron populations 1.21758 0.93569 1.02779 1.01908 1.20161 0.96769 0.88387 1.03667 1.25056 1.08496 1.01954 0.95665 1.20228 1.03365 0.93527 0.99970 1.20258 1.03867 0.98046 0.94946 1.24717 1.08504 0.99516 0.96917 1.21307 0.92629 0.89582 0.89406 0.90405 1.23092 0.96903 0.97185 0.99185 1.23146 0.98787 0.97980 0.97592 1.19764 0.91262 0.83684 0.87740 1.21888 1.00028 0.98647 0.98607 1.21515 1.01204 1.29476 1.05855 0.93132 1.25606 0.94965 0.95905 0.99877 1.70094 1.10763 1.33433 1.38048 0.85931 0.78958 0.77885 0.81123 1.19704 1.21216 1.19573 1.88765 1.67593 1.48798 1.24390 1.85186 1.63622 1.06463 1.10402 0.90230 0.91840 0.94103 0.91573 0.88072 0.81750 0.82400 0.92566 0.88250 0.91304 0.90652 0.92375 0.93856 0.95224 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.90 71.98 0.71 -2.05 16 2 C -0.05 -1.14 6.43 29.85 0.19 -0.94 16 3 C -0.19 -5.76 5.76 24.59 0.14 -5.62 16 4 C -0.14 -3.81 10.05 21.22 0.21 -3.60 16 5 C -0.14 -4.28 10.05 21.22 0.21 -4.07 16 6 C -0.18 -6.80 5.57 24.59 0.14 -6.67 16 7 C 0.13 5.31 3.88 30.51 0.12 5.43 16 8 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 9 C -0.13 -4.61 6.56 32.05 0.21 -4.40 16 10 C -0.14 -5.52 6.07 31.86 0.19 -5.32 16 11 C 0.21 10.64 0.82 -11.07 -0.01 10.63 16 12 C -0.13 -6.57 8.53 71.98 0.61 -5.96 16 13 C -0.54 -30.08 8.23 25.60 0.21 -29.87 16 14 H 0.05 2.78 7.48 -2.91 -0.02 2.76 16 15 C 0.04 2.19 5.26 84.65 0.45 2.64 16 16 N -0.89 -52.40 10.93 21.45 0.23 -52.16 16 17 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 21 O -0.38 -19.40 9.59 -148.98 -1.43 -20.83 16 22 S 0.08 3.09 23.04 -56.49 -1.30 1.79 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 30 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 31 H 0.10 2.86 8.14 -2.39 -0.02 2.85 16 32 H 0.07 2.74 7.60 -2.39 -0.02 2.72 16 33 H 0.07 2.65 7.86 -2.38 -0.02 2.63 16 34 H 0.06 3.23 6.06 -2.39 -0.01 3.21 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 36 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -65.15 316.26 3.96 -61.19 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.04 Total: 13.25 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 3.39 Total: -49.81 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.23 Total: -52.16 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -1.43 Total: -20.83 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.30 Total: 1.79 kcal Total: -65.15 3.96 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381055540.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.729 kcal (2) G-P(sol) polarization free energy of solvation -65.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds