Wall clock time and date at job start Mon Mar 30 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33388 * 125.20698 * 2 1 4 4 C 1.38422 * 114.92345 * 180.02562 * 3 2 1 5 5 C 1.33386 * 114.92402 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20654 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.48197 * 270.00060 * 6 5 4 8 8 C 1.53093 * 109.47974 * 149.96892 * 6 5 4 9 9 C 1.53174 * 109.16207 * 182.40948 * 8 6 5 10 10 C 1.53179 * 109.03867 * 56.97833 * 9 8 6 11 11 C 1.53091 * 109.16184 * 303.02315 * 10 9 8 12 12 H 1.09001 * 109.48763 * 177.59712 * 11 10 9 13 13 C 1.50700 * 109.47875 * 297.62240 * 11 10 9 14 14 H 1.07999 * 120.00082 * 5.58973 * 13 11 10 15 15 C 1.37877 * 119.99775 * 185.59764 * 13 11 10 16 16 N 1.31514 * 119.99916 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00059 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47299 * 90.00828 * 17 15 13 19 19 H 1.48505 * 109.47124 * 210.00305 * 17 15 13 20 20 H 1.48497 * 109.47130 * 330.00159 * 17 15 13 21 21 O 1.42895 * 109.47901 * 30.02668 * 6 5 4 22 22 S 1.75888 * 125.20081 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47007 * 89.97873 * 1 2 3 24 24 H 1.09002 * 109.47418 * 209.97398 * 1 2 3 25 25 H 1.08998 * 109.47662 * 329.98315 * 1 2 3 26 26 H 1.08004 * 122.53792 * 359.74838 * 3 2 1 27 27 H 1.08003 * 122.53890 * 179.97438 * 4 3 2 28 28 H 1.09006 * 109.46658 * 77.54010 * 7 6 5 29 29 H 1.08990 * 109.47293 * 197.53989 * 7 6 5 30 30 H 1.09000 * 109.47141 * 317.54808 * 7 6 5 31 31 H 1.09000 * 109.51898 * 302.31539 * 8 6 5 32 32 H 1.08998 * 109.52599 * 62.50186 * 8 6 5 33 33 H 1.09000 * 109.54552 * 297.11373 * 9 8 6 34 34 H 1.09002 * 109.54657 * 176.84879 * 9 8 6 35 35 H 1.08999 * 109.52187 * 183.11178 * 10 9 8 36 36 H 1.09006 * 109.52074 * 62.92414 * 10 9 8 37 37 H 0.96998 * 120.00350 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3860 -0.9772 -0.0016 7 6 5.8625 -1.1568 -1.4443 8 6 5.4257 -2.3262 0.7211 9 6 6.8719 -2.8288 0.7686 10 6 7.7448 -1.7748 1.4567 11 6 7.6155 -0.4471 0.7056 12 1 8.2011 0.3178 1.2156 13 6 8.1253 -0.6146 -0.7026 14 1 8.4192 -1.5912 -1.0579 15 6 8.2167 0.4789 -1.5374 16 7 8.6611 0.3327 -2.7665 17 14 7.7078 2.1680 -0.9230 18 1 8.8798 2.8471 -0.3142 19 1 7.2030 2.9774 -2.0611 20 1 6.6362 2.0225 0.0947 21 8 6.2425 -0.0523 0.6715 22 16 2.5208 -1.4372 -0.0006 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 1.8669 2.0895 -0.0040 27 1 4.3721 1.6349 -0.0010 28 1 6.1324 -0.1865 -1.8613 29 1 6.7320 -1.8138 -1.4607 30 1 5.0625 -1.5979 -2.0389 31 1 5.0481 -2.2066 1.7366 32 1 4.8075 -3.0455 0.1840 33 1 7.2334 -2.9957 -0.2460 34 1 6.9155 -3.7617 1.3307 35 1 8.7852 -2.0998 1.4456 36 1 7.4140 -1.6441 2.4871 37 1 8.7250 1.1019 -3.3539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381130857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:11 Heat of formation + Delta-G solvation = -8.084365 kcal Electronic energy + Delta-G solvation = -19235.681031 eV Core-core repulsion = 16490.972474 eV Total energy + Delta-G solvation = -2744.708557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36692 -37.33102 -33.12403 -32.74089 -32.31836 -30.51956 -27.97177 -26.06052 -24.65581 -23.27794 -22.20663 -21.10677 -18.56272 -18.40154 -17.02960 -16.25575 -15.44434 -14.81160 -14.27158 -14.06480 -13.95145 -13.72793 -13.33598 -12.89298 -12.56586 -12.46973 -12.18224 -12.07378 -11.73775 -11.62767 -11.41165 -11.27452 -10.71803 -10.64398 -10.46603 -10.30898 -10.10091 -9.91996 -9.75778 -9.51328 -8.82341 -8.39290 -8.19945 -8.08745 -7.87234 -6.14165 -4.09190 1.37395 1.91312 2.34538 3.17740 3.33556 3.44067 3.64263 4.48012 4.82751 5.04777 5.22711 5.32504 5.36789 5.52508 5.56870 5.69017 5.73760 5.84225 6.00306 6.04153 6.13809 6.16096 6.34547 6.44796 6.53663 6.55438 6.71357 6.72553 6.81311 6.91221 6.93333 6.96274 7.23596 7.32836 7.61418 7.84606 8.22494 8.65067 8.83656 9.49462 10.95702 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.008367 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.019083 B = 3345.614820 C = 4020.227330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.204 4.204 3 C -0.131 4.131 4 C -0.135 4.135 5 C -0.137 4.137 6 C 0.199 3.801 7 C -0.145 4.145 8 C -0.135 4.135 9 C -0.112 4.112 10 C -0.132 4.132 11 C 0.173 3.827 12 H 0.063 0.937 13 C -0.540 4.540 14 H 0.079 0.921 15 C 0.084 3.916 16 N -0.887 5.887 17 Si 0.857 3.143 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.226 1.226 21 O -0.382 6.382 22 S 0.087 5.913 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.012 0.988 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 -2.444 5.832 13.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.321 4.321 3 C -0.162 4.162 4 C -0.164 4.164 5 C -0.254 4.254 6 C 0.157 3.843 7 C -0.202 4.202 8 C -0.173 4.173 9 C -0.149 4.149 10 C -0.170 4.170 11 C 0.117 3.883 12 H 0.080 0.920 13 C -0.577 4.577 14 H 0.097 0.903 15 C -0.120 4.120 16 N -0.524 5.524 17 Si 0.684 3.316 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.149 1.149 21 O -0.302 6.302 22 S 0.350 5.650 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.150 0.850 27 H 0.159 0.841 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.418 -3.733 5.761 14.189 hybrid contribution 0.265 2.333 -0.001 2.348 sum -12.153 -1.399 5.760 13.522 Atomic orbital electron populations 1.20233 0.88353 1.02542 1.02218 1.24374 0.99445 0.96159 1.12095 1.20071 0.93110 0.98803 1.04218 1.20109 0.95627 0.96811 1.03804 1.24576 0.97659 0.96296 1.06905 1.19329 0.83367 0.87596 0.94043 1.22897 0.99990 1.04918 0.92410 1.22133 0.97859 0.97075 1.00261 1.21520 0.94316 0.97091 1.01954 1.21980 0.99379 0.97695 0.97899 1.20175 0.79573 0.92227 0.96280 0.91970 1.21304 1.44129 0.96526 0.95721 0.90278 1.24877 0.93497 0.99128 0.94480 1.69927 1.44915 1.31148 1.06459 0.87184 0.80602 0.83789 0.80068 1.21182 1.21862 1.14871 1.88005 1.19916 1.45575 1.76730 1.83914 0.96574 1.09615 1.74871 0.91263 0.91749 0.91019 0.85004 0.84056 0.90881 0.87971 0.96863 0.92263 0.92348 0.90383 0.93486 0.91829 0.93777 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.38 36.00 0.37 -0.41 16 2 C -0.20 -2.97 6.51 -36.01 -0.23 -3.20 16 3 C -0.13 -2.08 10.05 -41.21 -0.41 -2.49 16 4 C -0.13 -2.55 9.63 -41.21 -0.40 -2.95 16 5 C -0.14 -2.65 5.20 -36.00 -0.19 -2.83 16 6 C 0.20 4.13 1.04 -91.72 -0.09 4.03 16 7 C -0.14 -3.28 6.97 37.16 0.26 -3.02 16 8 C -0.14 -2.47 4.36 -26.59 -0.12 -2.59 16 9 C -0.11 -2.04 5.62 -26.55 -0.15 -2.19 16 10 C -0.13 -2.57 5.60 -26.59 -0.15 -2.71 16 11 C 0.17 3.96 2.63 -27.84 -0.07 3.88 16 12 H 0.06 1.44 7.26 -51.93 -0.38 1.06 16 13 C -0.54 -13.84 5.28 -34.44 -0.18 -14.02 16 14 H 0.08 2.18 6.28 -52.49 -0.33 1.85 16 15 C 0.08 2.28 3.63 -17.82 -0.06 2.21 16 16 N -0.89 -25.59 13.96 55.43 0.77 -24.82 16 17 Si 0.86 21.10 26.28 -169.99 -4.47 16.63 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 20 H -0.23 -5.42 5.24 56.52 0.30 -5.13 16 21 O -0.38 -8.75 7.06 -35.23 -0.25 -8.99 16 22 S 0.09 1.37 22.14 -107.50 -2.38 -1.01 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 27 H 0.14 2.86 7.53 -52.48 -0.40 2.47 16 28 H 0.07 1.85 5.24 -51.93 -0.27 1.58 16 29 H 0.10 2.43 3.48 -51.93 -0.18 2.25 16 30 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 33 H 0.08 1.54 5.32 -51.93 -0.28 1.27 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 289.96 15.07 4.37 4.37 Total: -1.00 -28.16 289.96 -8.65 -36.81 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.27 Total: 3.30 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -1.43 Total: -26.30 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.77 Total: -24.82 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.25 Total: -8.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.47 Total: 16.63 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.38 Total: -1.01 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.16 -8.65 -36.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381130857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.726 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds