Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33388 * 125.20698 * 2 1 4 4 C 1.38422 * 114.92345 * 180.02562 * 3 2 1 5 5 C 1.33386 * 114.92402 * 359.97438 * 4 3 2 6 6 C 1.50699 * 125.20654 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.48197 * 270.00060 * 6 5 4 8 8 C 1.53093 * 109.47974 * 149.96892 * 6 5 4 9 9 C 1.53174 * 109.16207 * 182.40948 * 8 6 5 10 10 C 1.53179 * 109.03867 * 56.97833 * 9 8 6 11 11 C 1.53091 * 109.16184 * 303.02315 * 10 9 8 12 12 H 1.09001 * 109.48763 * 177.59712 * 11 10 9 13 13 C 1.50700 * 109.47875 * 297.62240 * 11 10 9 14 14 H 1.07999 * 120.00082 * 5.58973 * 13 11 10 15 15 C 1.37877 * 119.99775 * 185.59764 * 13 11 10 16 16 N 1.31514 * 119.99916 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00059 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47299 * 90.00828 * 17 15 13 19 19 H 1.48505 * 109.47124 * 210.00305 * 17 15 13 20 20 H 1.48497 * 109.47130 * 330.00159 * 17 15 13 21 21 O 1.42895 * 109.47901 * 30.02668 * 6 5 4 22 22 S 1.75888 * 125.20081 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47007 * 89.97873 * 1 2 3 24 24 H 1.09002 * 109.47418 * 209.97398 * 1 2 3 25 25 H 1.08998 * 109.47662 * 329.98315 * 1 2 3 26 26 H 1.08004 * 122.53792 * 359.74838 * 3 2 1 27 27 H 1.08003 * 122.53890 * 179.97438 * 4 3 2 28 28 H 1.09006 * 109.46658 * 77.54010 * 7 6 5 29 29 H 1.08990 * 109.47293 * 197.53989 * 7 6 5 30 30 H 1.09000 * 109.47141 * 317.54808 * 7 6 5 31 31 H 1.09000 * 109.51898 * 302.31539 * 8 6 5 32 32 H 1.08998 * 109.52599 * 62.50186 * 8 6 5 33 33 H 1.09000 * 109.54552 * 297.11373 * 9 8 6 34 34 H 1.09002 * 109.54657 * 176.84879 * 9 8 6 35 35 H 1.08999 * 109.52187 * 183.11178 * 10 9 8 36 36 H 1.09006 * 109.52074 * 62.92414 * 10 9 8 37 37 H 0.96998 * 120.00350 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9751 -0.4478 -0.0005 6 6 5.3860 -0.9772 -0.0016 7 6 5.8625 -1.1568 -1.4443 8 6 5.4257 -2.3262 0.7211 9 6 6.8719 -2.8288 0.7686 10 6 7.7448 -1.7748 1.4567 11 6 7.6155 -0.4471 0.7056 12 1 8.2011 0.3178 1.2156 13 6 8.1253 -0.6146 -0.7026 14 1 8.4192 -1.5912 -1.0579 15 6 8.2167 0.4789 -1.5374 16 7 8.6611 0.3327 -2.7665 17 14 7.7078 2.1680 -0.9230 18 1 8.8798 2.8471 -0.3142 19 1 7.2030 2.9774 -2.0611 20 1 6.6362 2.0225 0.0947 21 8 6.2425 -0.0523 0.6715 22 16 2.5208 -1.4372 -0.0006 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5141 26 1 1.8669 2.0895 -0.0040 27 1 4.3721 1.6349 -0.0010 28 1 6.1324 -0.1865 -1.8613 29 1 6.7320 -1.8138 -1.4607 30 1 5.0625 -1.5979 -2.0389 31 1 5.0481 -2.2066 1.7366 32 1 4.8075 -3.0455 0.1840 33 1 7.2334 -2.9957 -0.2460 34 1 6.9155 -3.7617 1.3307 35 1 8.7852 -2.0998 1.4456 36 1 7.4140 -1.6441 2.4871 37 1 8.7250 1.1019 -3.3539 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381130857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = -23.425889 kcal Electronic energy + Delta-G solvation = -19236.346289 eV Core-core repulsion = 16490.972474 eV Total energy + Delta-G solvation = -2745.373815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02616 -38.63921 -34.88700 -34.36726 -34.05809 -31.79200 -29.85313 -27.33397 -26.44218 -24.75186 -23.61242 -22.74598 -20.24639 -19.87405 -18.71484 -17.82182 -16.88699 -16.59668 -15.85908 -15.71206 -15.62538 -14.95626 -14.74578 -14.38021 -14.14923 -13.91195 -13.66610 -13.51309 -13.39822 -13.10806 -12.78964 -12.65613 -12.53290 -12.46143 -12.01048 -11.78866 -11.68193 -11.63858 -11.47586 -11.30305 -10.66022 -10.44795 -9.87913 -9.33501 -9.26436 -8.27109 -6.21152 0.08935 0.64527 1.06900 1.32077 1.39209 1.63811 1.85361 2.42176 2.98820 3.44927 3.78083 4.00552 4.06212 4.16633 4.38977 4.41582 4.47350 4.54121 4.65156 4.78879 4.83498 4.85050 4.86802 4.90323 5.05918 5.14267 5.18364 5.25567 5.26295 5.33832 5.41168 5.50006 5.57922 5.65115 5.68861 5.96949 6.18883 6.70386 6.86380 7.39430 8.85952 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022376 B = 0.008367 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.019083 B = 3345.614820 C = 4020.227330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.185 4.185 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.179 4.179 6 C 0.195 3.805 7 C -0.135 4.135 8 C -0.129 4.129 9 C -0.110 4.110 10 C -0.128 4.128 11 C 0.168 3.832 12 H 0.058 0.942 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.043 3.957 16 N -0.930 5.930 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.301 1.301 20 H -0.219 1.219 21 O -0.393 6.393 22 S 0.118 5.882 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.117 0.883 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.812 -3.134 7.561 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.302 4.302 3 C -0.181 4.181 4 C -0.173 4.173 5 C -0.296 4.296 6 C 0.153 3.847 7 C -0.193 4.193 8 C -0.167 4.167 9 C -0.147 4.147 10 C -0.166 4.166 11 C 0.112 3.888 12 H 0.076 0.924 13 C -0.556 4.556 14 H 0.072 0.928 15 C -0.157 4.157 16 N -0.570 5.570 17 Si 0.729 3.271 18 H -0.209 1.209 19 H -0.228 1.228 20 H -0.141 1.141 21 O -0.314 6.314 22 S 0.382 5.618 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.173 0.827 27 H 0.135 0.865 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.143 -4.430 7.512 17.475 hybrid contribution 1.010 2.489 -0.552 2.742 sum -14.133 -1.941 6.960 15.873 Atomic orbital electron populations 1.20431 0.85078 1.04311 1.03723 1.24962 1.01412 0.94991 1.08808 1.20194 0.91767 1.00550 1.05589 1.20186 0.96905 0.96257 1.03931 1.24506 0.98187 0.97405 1.09479 1.19386 0.84024 0.88754 0.92497 1.22693 0.99655 1.02495 0.94438 1.22083 0.98150 0.95779 1.00668 1.21509 0.93950 0.98169 1.01097 1.21927 1.00156 0.95997 0.98528 1.20177 0.79703 0.94217 0.94733 0.92431 1.21440 1.42203 0.94982 0.96999 0.92797 1.25405 0.93995 1.01740 0.94535 1.70029 1.47688 1.31633 1.07698 0.86473 0.80386 0.80899 0.79365 1.20929 1.22839 1.14117 1.87950 1.19713 1.46814 1.76888 1.83703 0.94541 1.09321 1.74229 0.89726 0.90224 0.89033 0.82717 0.86506 0.94227 0.89724 0.95856 0.91118 0.90815 0.92550 0.90160 0.91443 0.91736 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.38 71.23 0.74 -0.52 16 2 C -0.18 -4.74 6.51 24.59 0.16 -4.58 16 3 C -0.15 -4.45 10.05 21.22 0.21 -4.24 16 4 C -0.14 -5.33 9.63 21.22 0.20 -5.12 16 5 C -0.18 -6.71 5.20 24.59 0.13 -6.58 16 6 C 0.19 8.00 1.04 -11.51 -0.01 7.98 16 7 C -0.14 -6.25 6.97 71.98 0.50 -5.75 16 8 C -0.13 -4.46 4.36 30.68 0.13 -4.32 16 9 C -0.11 -3.82 5.62 30.71 0.17 -3.65 16 10 C -0.13 -4.81 5.60 30.68 0.17 -4.63 16 11 C 0.17 7.65 2.63 29.88 0.08 7.73 16 12 H 0.06 2.66 7.26 -2.39 -0.02 2.64 16 13 C -0.52 -27.30 5.28 25.60 0.14 -27.17 16 14 H 0.05 3.08 6.28 -2.91 -0.02 3.06 16 15 C 0.04 2.39 3.63 84.65 0.31 2.69 16 16 N -0.93 -55.89 13.96 21.45 0.30 -55.59 16 17 Si 0.90 44.88 26.28 68.60 1.80 46.68 16 18 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 19 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 20 H -0.22 -10.53 5.24 99.48 0.52 -10.01 16 21 O -0.39 -17.92 7.06 -148.98 -1.05 -18.97 16 22 S 0.12 3.42 22.14 -56.49 -1.25 2.17 16 23 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 27 H 0.12 4.82 7.53 -2.91 -0.02 4.80 16 28 H 0.04 2.07 5.24 -2.38 -0.01 2.05 16 29 H 0.08 4.16 3.48 -2.39 -0.01 4.15 16 30 H 0.02 0.98 8.01 -2.39 -0.02 0.96 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 32 H 0.07 2.31 7.67 -2.39 -0.02 2.29 16 33 H 0.06 2.21 5.32 -2.39 -0.01 2.20 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -62.36 289.96 3.61 -58.75 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.88 Total: 15.13 kcal Atomic # 6 Polarization: -51.10 SS G_CDS: 2.93 Total: -48.17 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.30 Total: -55.59 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.05 Total: -18.97 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.80 Total: 46.68 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.25 Total: 2.17 kcal Total: -62.36 3.61 -58.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381130857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.324 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds