Wall clock time and date at job start Mon Mar 30 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46931 * 2 1 4 4 N 1.46497 * 109.46964 * 120.00006 * 2 1 3 5 5 C 1.38413 * 120.00093 * 274.99930 * 4 2 1 6 6 N 1.32746 * 119.43706 * 359.97438 * 5 4 2 7 7 C 1.31467 * 121.74179 * 180.02562 * 6 5 4 8 8 C 1.40789 * 120.39053 * 0.02562 * 7 6 5 9 9 C 1.41196 * 120.56889 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99504 * 335.70924 * 9 8 7 11 11 C 1.39864 * 120.00116 * 155.70477 * 9 8 7 12 12 N 1.30895 * 120.00342 * 343.25300 * 11 9 8 13 13 Si 1.86802 * 119.99679 * 163.25349 * 11 9 8 14 14 H 1.48500 * 109.47048 * 90.00267 * 13 11 9 15 15 H 1.48497 * 109.47031 * 210.00001 * 13 11 9 16 16 H 1.48500 * 109.47150 * 330.00162 * 13 11 9 17 17 C 1.41291 * 118.86659 * 0.02562 * 8 7 6 18 18 C 1.36657 * 118.40221 * 359.97438 * 17 8 7 19 19 Cl 1.73603 * 120.26281 * 180.27401 * 18 17 8 20 20 C 1.52997 * 109.46887 * 239.99666 * 2 1 3 21 21 C 1.53005 * 117.49278 * 128.74791 * 20 2 1 22 22 C 1.53005 * 117.49726 * 60.09092 * 20 2 1 23 23 H 1.08994 * 109.47154 * 59.99887 * 1 2 3 24 24 H 1.09000 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46752 * 299.99742 * 1 2 3 26 26 H 0.97007 * 120.00307 * 95.00319 * 4 2 1 27 27 H 1.07997 * 119.80262 * 179.97438 * 7 6 5 28 28 H 0.96999 * 120.00069 * 179.97438 * 12 11 9 29 29 H 1.08005 * 120.79555 * 180.02562 * 17 8 7 30 30 H 1.08998 * 115.55444 * 274.41494 * 20 2 1 31 31 H 1.08996 * 117.50229 * 359.97438 * 21 20 2 32 32 H 1.09002 * 117.49668 * 145.02232 * 21 20 2 33 33 H 1.08997 * 117.49494 * 214.97721 * 22 20 2 34 34 H 1.09000 * 117.49602 * 359.97321 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1505 -0.0001 2.3885 6 7 1.8321 1.2877 2.4353 7 6 1.9406 1.9872 3.5432 8 6 2.4045 1.3805 4.7260 9 6 2.5220 2.1279 5.9181 10 1 2.6439 3.2001 5.8733 11 6 2.4803 1.4799 7.1568 12 7 2.0135 0.2600 7.2420 13 14 3.0910 2.3555 8.6898 14 1 1.9670 3.0950 9.3183 15 1 3.6252 1.3570 9.6504 16 1 4.1661 3.3105 8.3193 17 6 2.7504 0.0108 4.6997 18 6 2.6191 -0.6703 3.5223 19 17 3.0235 -2.3564 3.4371 20 6 2.0400 -0.7213 -1.2492 21 6 3.0763 0.0039 -2.1100 22 6 1.6374 -0.1484 -2.6096 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.2491 -1.6318 1.1526 27 1 1.6732 3.0335 3.5458 28 1 1.9850 -0.1895 8.1011 29 1 3.1092 -0.4860 5.5890 30 1 2.1253 -1.8047 -1.1647 31 1 3.3944 0.9950 -1.7866 32 1 3.8432 -0.6024 -2.5922 33 1 1.4582 -0.8548 -3.4200 34 1 1.0089 0.7422 -2.6145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381204773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:58 Heat of formation + Delta-G solvation = 38.572434 kcal Electronic energy + Delta-G solvation = -17562.513055 eV Core-core repulsion = 14714.243639 eV Total energy + Delta-G solvation = -2848.269416 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.92922 -37.74895 -35.55743 -34.81715 -33.44381 -30.51257 -30.33430 -28.32558 -25.15616 -23.57651 -22.23582 -21.98888 -20.98327 -19.75174 -17.43866 -16.67185 -16.31214 -15.36069 -14.62333 -14.26123 -14.19452 -13.66363 -13.37569 -13.05806 -12.79113 -12.23595 -12.06136 -11.74201 -11.69121 -11.41904 -11.28011 -11.14050 -10.98723 -10.73185 -10.53308 -10.37962 -10.30351 -10.00403 -9.81813 -9.46930 -8.79747 -8.27386 -8.12174 -6.91343 -6.67150 -4.30064 2.52285 2.81121 3.05789 3.09123 3.18230 3.21704 3.79821 3.90001 4.20245 4.57749 4.81541 5.01921 5.11251 5.45755 5.54171 5.64995 5.71180 5.85513 5.93409 5.96483 6.04353 6.17005 6.27568 6.31811 6.56918 6.63797 6.72065 6.95834 7.09040 7.17958 7.66066 7.70254 8.13966 8.37820 8.44962 8.69152 8.73778 9.54509 10.13885 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.005029 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.907512 B = 5566.707209 C = 6115.747579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.197 3.803 3 H 0.081 0.919 4 N -0.734 5.734 5 C 0.294 3.706 6 N -0.503 5.503 7 C 0.015 3.985 8 C 0.037 3.963 9 C -0.453 4.453 10 H 0.082 0.918 11 C 0.073 3.927 12 N -0.799 5.799 13 Si 0.910 3.090 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.261 1.261 17 C -0.087 4.087 18 C -0.104 4.104 19 Cl -0.116 7.116 20 C -0.157 4.157 21 C -0.178 4.178 22 C -0.175 4.175 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.395 0.605 27 H 0.134 0.866 28 H 0.282 0.718 29 H 0.139 0.861 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 -2.177 -9.800 10.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.091 3.909 3 H 0.099 0.901 4 N -0.373 5.373 5 C 0.061 3.939 6 N -0.218 5.218 7 C -0.143 4.143 8 C 0.032 3.968 9 C -0.484 4.484 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.425 5.425 13 Si 0.734 3.266 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.114 4.114 18 C -0.137 4.137 19 Cl -0.088 7.088 20 C -0.176 4.176 21 C -0.215 4.215 22 C -0.212 4.212 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.231 0.769 27 H 0.151 0.849 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.012 -1.946 -10.460 10.640 hybrid contribution 0.594 -0.713 1.597 1.847 sum 0.582 -2.659 -8.864 9.272 Atomic orbital electron populations 1.22163 0.96708 1.01145 1.01553 1.20046 0.92700 0.96131 0.82051 0.90078 1.43826 1.75872 1.11362 1.06269 1.17420 1.02316 0.88897 0.85288 1.66763 1.20322 1.04619 1.30109 1.22360 1.04641 0.98784 0.88561 1.18294 0.92732 0.91722 0.94099 1.19312 1.44212 0.95340 0.89524 0.90001 1.25884 0.92581 0.94857 1.01057 1.69789 1.32612 1.12608 1.27536 0.86284 0.80020 0.79956 0.80344 1.19492 1.20136 1.18448 1.21303 0.99792 0.95163 0.95191 1.20929 1.12687 0.83675 0.96380 1.98238 1.93237 1.18836 1.98477 1.22561 1.03782 0.99251 0.92036 1.23010 0.92219 1.02274 1.03982 1.22908 0.98307 1.03245 0.96781 0.92995 0.93442 0.91912 0.76949 0.84891 0.90706 0.84315 0.88101 0.88662 0.89199 0.89090 0.88652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.34 37.16 0.35 -2.04 16 2 C 0.20 3.14 2.80 -67.93 -0.19 2.95 16 3 H 0.08 1.45 7.27 -51.93 -0.38 1.07 16 4 N -0.73 -13.59 5.16 -53.83 -0.28 -13.87 16 5 C 0.29 6.56 7.46 -155.05 -1.16 5.41 16 6 N -0.50 -11.63 9.14 -11.75 -0.11 -11.74 16 7 C 0.02 0.36 10.97 -16.74 -0.18 0.18 16 8 C 0.04 0.95 5.59 -106.65 -0.60 0.35 16 9 C -0.45 -11.43 9.07 -37.85 -0.34 -11.77 16 10 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 11 C 0.07 1.77 5.18 -17.34 -0.09 1.68 16 12 N -0.80 -20.09 10.91 55.54 0.61 -19.49 16 13 Si 0.91 18.11 29.59 -169.99 -5.03 13.08 16 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 15 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 C -0.09 -2.20 8.52 -38.99 -0.33 -2.53 16 18 C -0.10 -2.41 6.32 -39.57 -0.25 -2.66 16 19 Cl -0.12 -2.28 27.56 -51.86 -1.43 -3.71 16 20 C -0.16 -2.02 5.34 -90.62 -0.48 -2.51 16 21 C -0.18 -2.07 10.18 -26.69 -0.27 -2.35 16 22 C -0.17 -1.87 9.74 -26.69 -0.26 -2.13 16 23 H 0.05 0.67 7.29 -51.93 -0.38 0.29 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.39 6.85 7.16 -40.82 -0.29 6.56 16 27 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 28 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 29 H 0.14 3.63 6.20 -52.48 -0.33 3.31 16 30 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 31 H 0.09 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.00 7.61 -51.93 -0.40 0.60 16 LS Contribution 302.66 15.07 4.56 4.56 Total: -1.00 -26.01 302.66 -9.76 -35.77 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -4.27 Total: 10.81 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.81 Total: -15.41 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.22 Total: -45.10 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.43 Total: -3.71 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.01 -9.76 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381204773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.338 kcal (2) G-P(sol) polarization free energy of solvation -26.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds