Wall clock time and date at job start Mon Mar 30 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46931 * 2 1 4 4 N 1.46497 * 109.46964 * 120.00006 * 2 1 3 5 5 C 1.38413 * 120.00093 * 274.99930 * 4 2 1 6 6 N 1.32746 * 119.43706 * 359.97438 * 5 4 2 7 7 C 1.31467 * 121.74179 * 180.02562 * 6 5 4 8 8 C 1.40789 * 120.39053 * 0.02562 * 7 6 5 9 9 C 1.41196 * 120.56889 * 180.02562 * 8 7 6 10 10 H 1.07998 * 119.99504 * 335.70924 * 9 8 7 11 11 C 1.39864 * 120.00116 * 155.70477 * 9 8 7 12 12 N 1.30895 * 120.00342 * 343.25300 * 11 9 8 13 13 Si 1.86802 * 119.99679 * 163.25349 * 11 9 8 14 14 H 1.48500 * 109.47048 * 90.00267 * 13 11 9 15 15 H 1.48497 * 109.47031 * 210.00001 * 13 11 9 16 16 H 1.48500 * 109.47150 * 330.00162 * 13 11 9 17 17 C 1.41291 * 118.86659 * 0.02562 * 8 7 6 18 18 C 1.36657 * 118.40221 * 359.97438 * 17 8 7 19 19 Cl 1.73603 * 120.26281 * 180.27401 * 18 17 8 20 20 C 1.52997 * 109.46887 * 239.99666 * 2 1 3 21 21 C 1.53005 * 117.49278 * 128.74791 * 20 2 1 22 22 C 1.53005 * 117.49726 * 60.09092 * 20 2 1 23 23 H 1.08994 * 109.47154 * 59.99887 * 1 2 3 24 24 H 1.09000 * 109.47348 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46752 * 299.99742 * 1 2 3 26 26 H 0.97007 * 120.00307 * 95.00319 * 4 2 1 27 27 H 1.07997 * 119.80262 * 179.97438 * 7 6 5 28 28 H 0.96999 * 120.00069 * 179.97438 * 12 11 9 29 29 H 1.08005 * 120.79555 * 180.02562 * 17 8 7 30 30 H 1.08998 * 115.55444 * 274.41494 * 20 2 1 31 31 H 1.08996 * 117.50229 * 359.97438 * 21 20 2 32 32 H 1.09002 * 117.49668 * 145.02232 * 21 20 2 33 33 H 1.08997 * 117.49494 * 214.97721 * 22 20 2 34 34 H 1.09000 * 117.49602 * 359.97321 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1505 -0.0001 2.3885 6 7 1.8321 1.2877 2.4353 7 6 1.9406 1.9872 3.5432 8 6 2.4045 1.3805 4.7260 9 6 2.5220 2.1279 5.9181 10 1 2.6439 3.2001 5.8733 11 6 2.4803 1.4799 7.1568 12 7 2.0135 0.2600 7.2420 13 14 3.0910 2.3555 8.6898 14 1 1.9670 3.0950 9.3183 15 1 3.6252 1.3570 9.6504 16 1 4.1661 3.3105 8.3193 17 6 2.7504 0.0108 4.6997 18 6 2.6191 -0.6703 3.5223 19 17 3.0235 -2.3564 3.4371 20 6 2.0400 -0.7213 -1.2492 21 6 3.0763 0.0039 -2.1100 22 6 1.6374 -0.1484 -2.6096 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 2.2491 -1.6318 1.1526 27 1 1.6732 3.0335 3.5458 28 1 1.9850 -0.1895 8.1011 29 1 3.1092 -0.4860 5.5890 30 1 2.1253 -1.8047 -1.1647 31 1 3.3944 0.9950 -1.7866 32 1 3.8432 -0.6024 -2.5922 33 1 1.4582 -0.8548 -3.4200 34 1 1.0089 0.7422 -2.6145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381204773.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:57 Heat of formation + Delta-G solvation = 26.449280 kcal Electronic energy + Delta-G solvation = -17563.038754 eV Core-core repulsion = 14714.243639 eV Total energy + Delta-G solvation = -2848.795115 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62778 -38.96741 -37.27737 -36.39792 -35.07418 -32.35684 -31.89590 -29.95567 -26.87117 -24.97098 -23.73672 -23.09405 -22.70738 -20.99534 -19.28926 -18.28832 -17.76225 -16.98475 -16.18200 -15.93626 -15.41183 -15.22487 -14.78954 -14.68644 -14.19143 -13.90086 -13.61025 -13.33486 -13.15293 -12.93028 -12.73403 -12.65830 -12.42273 -12.22905 -12.04339 -11.73452 -11.54366 -11.40143 -11.18173 -10.96354 -10.43922 -10.11131 -9.96096 -8.70557 -8.42405 -6.18024 0.66725 1.00738 1.42914 1.43187 1.52549 1.58505 2.23889 2.56220 2.75283 3.02417 3.65447 3.76231 4.06688 4.10407 4.22302 4.37968 4.46197 4.59040 4.69935 4.76660 4.81494 4.90574 5.05588 5.08479 5.13282 5.22435 5.29084 5.31761 5.36979 5.48761 5.81358 5.82463 6.35591 6.62778 6.78201 6.86043 6.91417 7.74327 8.35580 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.005029 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.907512 B = 5566.707209 C = 6115.747579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.195 3.805 3 H 0.060 0.940 4 N -0.726 5.726 5 C 0.298 3.702 6 N -0.508 5.508 7 C 0.009 3.991 8 C 0.009 3.991 9 C -0.483 4.483 10 H 0.086 0.914 11 C 0.035 3.965 12 N -0.832 5.832 13 Si 0.982 3.018 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.258 1.258 17 C -0.103 4.103 18 C -0.117 4.117 19 Cl -0.087 7.087 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.154 4.154 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.401 0.599 27 H 0.147 0.853 28 H 0.288 0.712 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 -2.555 -11.039 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.090 3.910 3 H 0.078 0.922 4 N -0.365 5.365 5 C 0.063 3.937 6 N -0.224 5.224 7 C -0.149 4.149 8 C 0.003 3.997 9 C -0.514 4.514 10 H 0.104 0.896 11 C -0.180 4.180 12 N -0.459 5.459 13 Si 0.803 3.197 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.181 1.181 17 C -0.130 4.130 18 C -0.150 4.150 19 Cl -0.059 7.059 20 C -0.189 4.189 21 C -0.218 4.218 22 C -0.191 4.191 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.238 0.762 27 H 0.164 0.836 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.044 -2.339 -11.743 11.974 hybrid contribution 0.553 -0.684 1.828 2.028 sum 0.597 -3.023 -9.916 10.383 Atomic orbital electron populations 1.22083 0.96014 1.01515 1.01238 1.20155 0.93184 0.95309 0.82381 0.92161 1.43966 1.75038 1.11605 1.05884 1.17712 1.00836 0.88816 0.86361 1.66838 1.20741 1.05100 1.29755 1.22601 1.04343 0.99525 0.88475 1.18581 0.93766 0.92326 0.94978 1.19577 1.45763 0.95738 0.90327 0.89628 1.26700 0.92034 0.95457 1.03763 1.69850 1.33437 1.14026 1.28609 0.85197 0.79460 0.78753 0.76302 1.18803 1.19546 1.18129 1.21242 1.00820 0.95483 0.95462 1.21011 1.12601 0.85304 0.96093 1.98232 1.92987 1.16257 1.98416 1.22426 1.05597 0.99424 0.91489 1.23070 0.93239 1.01759 1.03725 1.23017 0.97252 1.03340 0.95531 0.90479 0.92658 0.95033 0.76203 0.83599 0.90160 0.85818 0.87215 0.89794 0.87709 0.86828 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.34 71.98 0.67 -3.68 16 2 C 0.20 5.99 2.80 44.99 0.13 6.11 16 3 H 0.06 2.12 7.27 -2.39 -0.02 2.10 16 4 N -0.73 -26.29 5.16 -324.22 -1.67 -27.96 16 5 C 0.30 13.31 7.46 133.32 0.99 14.31 16 6 N -0.51 -23.80 9.14 -191.08 -1.75 -25.54 16 7 C 0.01 0.43 10.97 85.37 0.94 1.37 16 8 C 0.01 0.48 5.59 -21.18 -0.12 0.36 16 9 C -0.48 -24.95 9.07 23.39 0.21 -24.74 16 10 H 0.09 4.18 7.90 -2.91 -0.02 4.15 16 11 C 0.03 1.69 5.18 85.23 0.44 2.13 16 12 N -0.83 -42.67 10.91 21.81 0.24 -42.43 16 13 Si 0.98 37.23 29.59 68.60 2.03 39.26 16 14 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 15 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 17 C -0.10 -5.32 8.52 22.65 0.19 -5.12 16 18 C -0.12 -5.47 6.32 22.28 0.14 -5.33 16 19 Cl -0.09 -3.38 27.56 -2.72 -0.07 -3.45 16 20 C -0.17 -3.97 5.34 -10.79 -0.06 -4.03 16 21 C -0.18 -3.79 10.18 30.62 0.31 -3.48 16 22 C -0.15 -2.78 9.74 30.62 0.30 -2.48 16 23 H 0.08 1.83 7.29 -2.39 -0.02 1.81 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.40 13.37 7.16 -92.70 -0.66 12.71 16 27 H 0.15 6.54 8.06 -2.91 -0.02 6.52 16 28 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 29 H 0.12 6.70 6.20 -2.91 -0.02 6.68 16 30 H 0.11 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.74 7.61 -2.39 -0.02 1.72 16 Total: -1.00 -56.39 302.66 3.38 -53.00 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.45 Total: 31.70 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 4.15 Total: -24.57 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.18 Total: -95.94 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.07 Total: -3.45 kcal Total: -56.39 3.38 -53.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381204773.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.454 kcal (2) G-P(sol) polarization free energy of solvation -56.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds