Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 N 1.46499 * 109.46780 * 240.00532 * 2 1 3 5 5 C 1.38405 * 119.99935 * 85.00023 * 4 2 1 6 6 N 1.32744 * 119.43890 * 359.72328 * 5 4 2 7 7 C 1.31480 * 121.74036 * 179.75069 * 6 5 4 8 8 C 1.40789 * 120.38771 * 0.52462 * 7 6 5 9 9 C 1.41201 * 120.56441 * 179.76375 * 8 7 6 10 10 H 1.07996 * 119.99763 * 150.32500 * 9 8 7 11 11 C 1.39866 * 119.99752 * 330.32998 * 9 8 7 12 12 N 1.30902 * 119.99624 * 161.79038 * 11 9 8 13 13 Si 1.86797 * 120.00211 * 341.78184 * 11 9 8 14 14 H 1.48507 * 109.47003 * 95.41191 * 13 11 9 15 15 H 1.48500 * 109.47401 * 215.41421 * 13 11 9 16 16 H 1.48505 * 109.47253 * 335.41393 * 13 11 9 17 17 C 1.41278 * 118.87166 * 359.74627 * 8 7 6 18 18 C 1.36673 * 118.40343 * 359.97438 * 17 8 7 19 19 Cl 1.73596 * 120.26703 * 179.97438 * 18 17 8 20 20 C 1.52996 * 109.47320 * 120.00765 * 2 1 3 21 21 C 1.53003 * 117.51600 * 231.28323 * 20 2 1 22 22 C 1.52995 * 60.00076 * 107.47884 * 21 20 2 23 23 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46511 * 299.99265 * 1 2 3 25 25 H 1.08994 * 109.47141 * 59.99426 * 1 2 3 26 26 H 0.96996 * 120.00272 * 264.99866 * 4 2 1 27 27 H 1.07994 * 119.80481 * 180.24951 * 7 6 5 28 28 H 0.97003 * 119.99727 * 179.97438 * 12 11 9 29 29 H 1.08001 * 120.80393 * 180.02562 * 17 8 7 30 30 H 1.08995 * 115.55400 * 85.58009 * 20 2 1 31 31 H 1.09004 * 117.49615 * 214.97140 * 21 20 2 32 32 H 1.09000 * 117.49945 * 359.97438 * 21 20 2 33 33 H 1.08999 * 117.49963 * 252.51200 * 22 21 20 34 34 H 1.09005 * 117.50051 * 107.48957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1504 0.0001 -2.3884 6 7 1.8263 1.2864 -2.4366 7 6 1.9387 1.9870 -3.5436 8 6 2.4019 1.3802 -4.7265 9 6 2.5193 2.1278 -5.9186 10 1 3.2698 1.8647 -6.6493 11 6 1.6637 3.2092 -6.1529 12 7 1.9778 4.1098 -7.0494 13 14 0.0729 3.3680 -5.1869 14 1 0.2895 4.2604 -4.0198 15 1 -0.9816 3.9426 -6.0604 16 1 -0.3540 2.0271 -4.7122 17 6 2.7478 0.0107 -4.7004 18 6 2.6179 -0.6704 -3.5226 19 17 3.0284 -2.3549 -3.4360 20 6 2.0401 -0.7214 1.2491 21 6 3.0759 0.0037 2.1107 22 6 1.6376 -0.1485 2.6095 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8902 25 1 -0.3633 0.5139 -0.8899 26 1 2.2490 -1.6316 -1.1528 27 1 1.6698 3.0329 -3.5465 28 1 1.3842 4.8596 -7.2123 29 1 3.1069 -0.4861 -5.5896 30 1 2.1254 -1.8047 1.1645 31 1 3.8427 -0.6028 2.5929 32 1 3.3945 0.9947 1.7875 33 1 1.0097 0.7424 2.6146 34 1 1.4580 -0.8551 3.4199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381204774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = 41.134728 kcal Electronic energy + Delta-G solvation = -17696.688382 eV Core-core repulsion = 14848.530075 eV Total energy + Delta-G solvation = -2848.158306 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20153 -37.90099 -35.86549 -34.89145 -33.42925 -31.22912 -30.62064 -28.63768 -25.11104 -23.53849 -22.61086 -22.26464 -20.92422 -19.90118 -17.81479 -17.07209 -16.37600 -15.37773 -14.86975 -14.43217 -14.24485 -13.83706 -13.58000 -13.22859 -12.93837 -12.76338 -12.22711 -12.05636 -11.77699 -11.54774 -11.32422 -11.15857 -10.97000 -10.82883 -10.62221 -10.48036 -10.35712 -10.10402 -9.99648 -9.51413 -8.94917 -8.51391 -8.36133 -7.00507 -6.95883 -4.43615 2.20319 2.50644 2.89646 3.07320 3.16061 3.26317 3.70327 3.90300 4.05880 4.43675 4.73295 4.95266 5.03294 5.26132 5.36673 5.59445 5.60231 5.65824 5.82166 5.86558 5.91456 6.01203 6.11366 6.16941 6.24251 6.42306 6.58527 6.60696 6.77748 7.06060 7.21553 7.52573 8.00258 8.14098 8.29225 8.39790 8.64731 9.29235 10.02058 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.006397 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.849583 B = 4375.672589 C = 5320.965000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.195 3.805 3 H 0.083 0.917 4 N -0.732 5.732 5 C 0.295 3.705 6 N -0.490 5.490 7 C 0.009 3.991 8 C 0.019 3.981 9 C -0.438 4.438 10 H 0.093 0.907 11 C 0.084 3.916 12 N -0.806 5.806 13 Si 0.902 3.098 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.248 1.248 17 C -0.130 4.130 18 C -0.090 4.090 19 Cl -0.107 7.107 20 C -0.158 4.158 21 C -0.177 4.177 22 C -0.174 4.174 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.396 0.604 27 H 0.138 0.862 28 H 0.286 0.714 29 H 0.122 0.878 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -6.830 12.150 14.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 H 0.101 0.899 4 N -0.371 5.371 5 C 0.062 3.938 6 N -0.205 5.205 7 C -0.150 4.150 8 C 0.013 3.987 9 C -0.468 4.468 10 H 0.111 0.889 11 C -0.134 4.134 12 N -0.430 5.430 13 Si 0.728 3.272 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.171 1.171 17 C -0.157 4.157 18 C -0.122 4.122 19 Cl -0.079 7.079 20 C -0.177 4.177 21 C -0.214 4.214 22 C -0.212 4.212 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.232 0.768 27 H 0.155 0.845 28 H 0.097 0.903 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.939 -6.194 12.805 14.356 hybrid contribution -0.254 -0.722 -0.522 0.927 sum -2.193 -6.916 12.282 14.265 Atomic orbital electron populations 1.22165 0.96574 1.01236 1.01668 1.20096 0.92796 0.96246 0.81996 0.89912 1.43833 1.75656 1.11379 1.06260 1.17408 1.02014 0.88972 0.85404 1.66785 1.19040 1.04738 1.29927 1.22422 1.06579 0.98380 0.87603 1.18415 0.94585 0.91077 0.94614 1.19199 1.16005 1.08782 1.02805 0.88903 1.26063 0.99776 0.93190 0.94420 1.69705 1.36149 1.08453 1.28714 0.86457 0.80863 0.80808 0.79040 1.19151 1.21322 1.17119 1.20964 1.05747 0.93608 0.95412 1.20859 1.11211 0.83970 0.96202 1.98258 1.92925 1.18281 1.98461 1.22536 1.03963 0.99233 0.91961 1.23007 0.92256 1.02294 1.03876 1.22901 0.98339 1.03244 0.96685 0.93313 0.92801 0.91991 0.76766 0.84481 0.90323 0.85992 0.88035 0.89130 0.88619 0.88634 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.34 37.16 0.35 -1.95 16 2 C 0.19 2.96 2.80 -67.93 -0.19 2.77 16 3 H 0.08 1.43 7.28 -51.93 -0.38 1.05 16 4 N -0.73 -12.69 5.16 -53.83 -0.28 -12.96 16 5 C 0.30 6.20 7.46 -155.05 -1.16 5.05 16 6 N -0.49 -11.14 9.14 -11.75 -0.11 -11.24 16 7 C 0.01 0.23 8.37 -16.74 -0.14 0.09 16 8 C 0.02 0.47 5.12 -106.65 -0.55 -0.07 16 9 C -0.44 -11.35 9.58 -37.85 -0.36 -11.72 16 10 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.08 2.13 5.41 -17.34 -0.09 2.04 16 12 N -0.81 -20.79 13.93 55.54 0.77 -20.01 16 13 Si 0.90 20.14 24.52 -169.99 -4.17 15.97 16 14 H -0.27 -5.76 6.71 56.52 0.38 -5.38 16 15 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.25 -5.78 6.86 56.52 0.39 -5.40 16 17 C -0.13 -2.93 9.66 -38.99 -0.38 -3.31 16 18 C -0.09 -1.88 6.32 -39.56 -0.25 -2.13 16 19 Cl -0.11 -1.85 27.56 -51.86 -1.43 -3.28 16 20 C -0.16 -1.92 5.34 -90.62 -0.48 -2.40 16 21 C -0.18 -1.98 10.18 -26.73 -0.27 -2.25 16 22 C -0.17 -1.78 9.73 -26.73 -0.26 -2.04 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.67 7.29 -51.92 -0.38 0.29 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.40 6.28 7.16 -40.82 -0.29 5.99 16 27 H 0.14 3.26 4.72 -52.49 -0.25 3.01 16 28 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 2.59 8.06 -52.49 -0.42 2.16 16 30 H 0.10 1.16 8.07 -51.93 -0.42 0.75 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.10 0.96 7.61 -51.93 -0.40 0.57 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -26.04 297.45 -8.75 -34.79 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.24 Total: 8.18 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -3.78 Total: -15.92 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.39 Total: -44.22 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.17 Total: 15.97 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -1.43 Total: -3.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.04 -8.75 -34.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381204774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.924 kcal (2) G-P(sol) polarization free energy of solvation -26.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds