Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47267 * 2 1 4 4 N 1.46499 * 109.46780 * 240.00532 * 2 1 3 5 5 C 1.38405 * 119.99935 * 85.00023 * 4 2 1 6 6 N 1.32744 * 119.43890 * 359.72328 * 5 4 2 7 7 C 1.31480 * 121.74036 * 179.75069 * 6 5 4 8 8 C 1.40789 * 120.38771 * 0.52462 * 7 6 5 9 9 C 1.41201 * 120.56441 * 179.76375 * 8 7 6 10 10 H 1.07996 * 119.99763 * 150.32500 * 9 8 7 11 11 C 1.39866 * 119.99752 * 330.32998 * 9 8 7 12 12 N 1.30902 * 119.99624 * 161.79038 * 11 9 8 13 13 Si 1.86797 * 120.00211 * 341.78184 * 11 9 8 14 14 H 1.48507 * 109.47003 * 95.41191 * 13 11 9 15 15 H 1.48500 * 109.47401 * 215.41421 * 13 11 9 16 16 H 1.48505 * 109.47253 * 335.41393 * 13 11 9 17 17 C 1.41278 * 118.87166 * 359.74627 * 8 7 6 18 18 C 1.36673 * 118.40343 * 359.97438 * 17 8 7 19 19 Cl 1.73596 * 120.26703 * 179.97438 * 18 17 8 20 20 C 1.52996 * 109.47320 * 120.00765 * 2 1 3 21 21 C 1.53003 * 117.51600 * 231.28323 * 20 2 1 22 22 C 1.52995 * 60.00076 * 107.47884 * 21 20 2 23 23 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 24 24 H 1.09010 * 109.46511 * 299.99265 * 1 2 3 25 25 H 1.08994 * 109.47141 * 59.99426 * 1 2 3 26 26 H 0.96996 * 120.00272 * 264.99866 * 4 2 1 27 27 H 1.07994 * 119.80481 * 180.24951 * 7 6 5 28 28 H 0.97003 * 119.99727 * 179.97438 * 12 11 9 29 29 H 1.08001 * 120.80393 * 180.02562 * 17 8 7 30 30 H 1.08995 * 115.55400 * 85.58009 * 20 2 1 31 31 H 1.09004 * 117.49615 * 214.97140 * 21 20 2 32 32 H 1.09000 * 117.49945 * 359.97438 * 21 20 2 33 33 H 1.08999 * 117.49963 * 252.51200 * 22 21 20 34 34 H 1.09005 * 117.50051 * 107.48957 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1504 0.0001 -2.3884 6 7 1.8263 1.2864 -2.4366 7 6 1.9387 1.9870 -3.5436 8 6 2.4019 1.3802 -4.7265 9 6 2.5193 2.1278 -5.9186 10 1 3.2698 1.8647 -6.6493 11 6 1.6637 3.2092 -6.1529 12 7 1.9778 4.1098 -7.0494 13 14 0.0729 3.3680 -5.1869 14 1 0.2895 4.2604 -4.0198 15 1 -0.9816 3.9426 -6.0604 16 1 -0.3540 2.0271 -4.7122 17 6 2.7478 0.0107 -4.7004 18 6 2.6179 -0.6704 -3.5226 19 17 3.0284 -2.3549 -3.4360 20 6 2.0401 -0.7214 1.2491 21 6 3.0759 0.0037 2.1107 22 6 1.6376 -0.1485 2.6095 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8902 25 1 -0.3633 0.5139 -0.8899 26 1 2.2490 -1.6316 -1.1528 27 1 1.6698 3.0329 -3.5465 28 1 1.3842 4.8596 -7.2123 29 1 3.1069 -0.4861 -5.5896 30 1 2.1254 -1.8047 1.1645 31 1 3.8427 -0.6028 2.5929 32 1 3.3945 0.9947 1.7875 33 1 1.0097 0.7424 2.6146 34 1 1.4580 -0.8551 3.4199 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381204774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = 27.442231 kcal Electronic energy + Delta-G solvation = -17697.282133 eV Core-core repulsion = 14848.530075 eV Total energy + Delta-G solvation = -2848.752058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.88495 -39.04690 -37.45088 -36.39521 -35.13454 -33.01256 -32.16678 -30.18779 -26.76960 -24.97647 -24.24296 -23.10604 -22.60213 -21.10338 -19.65726 -18.68244 -17.75109 -17.07145 -16.33253 -16.12268 -15.49593 -15.38739 -14.99656 -14.81353 -14.52048 -14.21441 -13.84066 -13.38855 -13.28974 -12.87008 -12.81586 -12.74473 -12.61693 -12.24638 -12.11673 -11.82772 -11.65885 -11.40238 -11.28061 -10.99797 -10.58841 -10.22913 -10.14798 -8.89243 -8.63894 -6.35583 0.39791 0.70627 1.24142 1.27001 1.38155 1.45636 2.08477 2.44767 2.57931 2.99141 3.39198 3.69989 3.91223 4.05265 4.15638 4.22703 4.34539 4.42968 4.52264 4.65122 4.77046 4.79884 4.84137 4.99256 5.05243 5.08895 5.23803 5.28710 5.31893 5.40299 5.44565 5.73562 6.16317 6.35767 6.60073 6.68141 6.77648 7.56365 8.19320 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.019997 B = 0.006397 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.849583 B = 4375.672589 C = 5320.965000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.191 3.809 3 H 0.061 0.939 4 N -0.721 5.721 5 C 0.310 3.690 6 N -0.503 5.503 7 C 0.003 3.997 8 C 0.000 4.000 9 C -0.468 4.468 10 H 0.066 0.934 11 C 0.055 3.945 12 N -0.844 5.844 13 Si 0.952 3.048 14 H -0.256 1.256 15 H -0.272 1.272 16 H -0.264 1.264 17 C -0.127 4.127 18 C -0.100 4.100 19 Cl -0.068 7.068 20 C -0.168 4.168 21 C -0.182 4.182 22 C -0.156 4.156 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.406 0.594 27 H 0.135 0.865 28 H 0.295 0.705 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -8.612 14.869 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.086 3.914 3 H 0.079 0.921 4 N -0.360 5.360 5 C 0.074 3.926 6 N -0.219 5.219 7 C -0.155 4.155 8 C -0.006 4.006 9 C -0.499 4.499 10 H 0.084 0.916 11 C -0.160 4.160 12 N -0.471 5.471 13 Si 0.776 3.224 14 H -0.182 1.182 15 H -0.198 1.198 16 H -0.189 1.189 17 C -0.154 4.154 18 C -0.133 4.133 19 Cl -0.040 7.040 20 C -0.186 4.186 21 C -0.219 4.219 22 C -0.193 4.193 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.244 0.756 27 H 0.152 0.848 28 H 0.105 0.895 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.633 -7.983 15.547 17.674 hybrid contribution 0.042 -0.425 -1.170 1.246 sum -2.591 -8.408 14.377 16.855 Atomic orbital electron populations 1.22093 0.95816 1.01822 1.01291 1.20219 0.93346 0.95430 0.82450 0.92128 1.44009 1.74448 1.11766 1.05751 1.17784 0.99509 0.88664 0.86662 1.66839 1.20154 1.05594 1.29344 1.22403 1.06730 0.98547 0.87803 1.18465 0.95821 0.91998 0.94321 1.19137 1.16869 1.10557 1.03323 0.91626 1.26570 1.01593 0.92756 0.95077 1.69723 1.37508 1.09418 1.30412 0.85699 0.78328 0.79907 0.78458 1.18186 1.19767 1.18894 1.21151 1.04595 0.93189 0.96487 1.20898 1.10728 0.86108 0.95575 1.98266 1.92554 1.14816 1.98367 1.22410 1.05413 0.99549 0.91253 1.23062 0.93276 1.01757 1.03789 1.23005 0.97292 1.03333 0.95671 0.92170 0.90555 0.95028 0.75642 0.84761 0.89477 0.85149 0.86789 0.87632 0.89931 0.88523 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.34 71.98 0.67 -3.38 16 2 C 0.19 5.39 2.80 44.99 0.13 5.52 16 3 H 0.06 2.01 7.28 -2.39 -0.02 2.00 16 4 N -0.72 -23.36 5.16 -324.22 -1.67 -25.03 16 5 C 0.31 12.60 7.46 133.33 0.99 13.60 16 6 N -0.50 -22.65 9.14 -191.08 -1.75 -24.40 16 7 C 0.00 0.13 8.37 85.37 0.71 0.84 16 8 C 0.00 0.00 5.12 -21.18 -0.11 -0.11 16 9 C -0.47 -25.30 9.58 23.39 0.22 -25.08 16 10 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 11 C 0.06 2.87 5.41 85.23 0.46 3.33 16 12 N -0.84 -44.95 13.93 21.82 0.30 -44.65 16 13 Si 0.95 42.16 24.52 68.60 1.68 43.85 16 14 H -0.26 -10.85 6.71 99.48 0.67 -10.18 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.26 -12.32 6.86 99.48 0.68 -11.64 16 17 C -0.13 -5.71 9.66 22.65 0.22 -5.49 16 18 C -0.10 -4.04 6.32 22.28 0.14 -3.90 16 19 Cl -0.07 -2.19 27.56 -2.72 -0.07 -2.26 16 20 C -0.17 -3.52 5.34 -10.79 -0.06 -3.57 16 21 C -0.18 -3.53 10.18 30.59 0.31 -3.22 16 22 C -0.16 -2.59 9.73 30.59 0.30 -2.29 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.69 7.29 -2.38 -0.02 1.67 16 25 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.41 11.61 7.16 -92.71 -0.66 10.95 16 27 H 0.14 6.48 4.72 -2.91 -0.01 6.46 16 28 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 29 H 0.13 5.53 8.06 -2.91 -0.02 5.50 16 30 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 31 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 1.83 8.05 -2.39 -0.02 1.81 16 33 H 0.10 1.61 7.61 -2.39 -0.02 1.59 16 34 H 0.11 1.44 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -56.69 297.45 2.88 -53.81 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.39 Total: 22.44 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 3.99 Total: -23.76 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -3.11 Total: -94.07 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.68 Total: 43.85 kcal Atomic # 17 Polarization: -2.19 SS G_CDS: -0.07 Total: -2.26 kcal Total: -56.69 2.88 -53.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381204774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.250 kcal (2) G-P(sol) polarization free energy of solvation -56.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds