Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33389 * 125.20585 * 2 1 4 4 C 1.38422 * 114.92136 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.53618 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.48028 * 269.99764 * 5 4 3 7 7 C 1.53095 * 109.48536 * 149.97117 * 5 4 3 8 8 C 1.53179 * 109.16072 * 182.40095 * 7 5 4 9 9 C 1.53181 * 109.03457 * 56.98109 * 8 7 5 10 10 C 1.53087 * 109.16284 * 303.01658 * 9 8 7 11 11 H 1.08999 * 109.48633 * 297.62739 * 10 9 8 12 12 C 1.50703 * 109.49190 * 177.59689 * 10 9 8 13 13 H 1.08004 * 119.99786 * 0.05624 * 12 10 9 14 14 C 1.37879 * 120.00497 * 180.02562 * 12 10 9 15 15 N 1.31509 * 119.99641 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99978 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47388 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47099 * 119.99974 * 16 14 12 19 19 H 1.48504 * 109.46585 * 239.99300 * 16 14 12 20 20 O 1.42903 * 109.47875 * 30.02376 * 5 4 3 21 21 C 1.33385 * 114.92056 * 0.24966 * 4 3 2 22 22 S 1.75882 * 109.59485 * 359.63452 * 21 4 3 23 23 H 1.08996 * 109.47008 * 89.99565 * 1 2 3 24 24 H 1.08998 * 109.47515 * 209.99829 * 1 2 3 25 25 H 1.09004 * 109.46857 * 329.99813 * 1 2 3 26 26 H 1.08001 * 122.53540 * 359.94511 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46832 * 60.02619 * 6 5 4 29 29 H 1.09004 * 109.47261 * 300.02600 * 6 5 4 30 30 H 1.08997 * 109.52582 * 302.30488 * 7 5 4 31 31 H 1.08995 * 109.52520 * 62.50008 * 7 5 4 32 32 H 1.08999 * 109.54339 * 297.11667 * 8 7 5 33 33 H 1.08999 * 109.61786 * 176.88816 * 8 7 5 34 34 H 1.09000 * 109.52198 * 183.11172 * 9 8 7 35 35 H 1.08993 * 109.57498 * 62.95581 * 9 8 7 36 36 H 0.97001 * 120.00112 * 179.97438 * 15 14 12 37 37 H 1.08008 * 125.20077 * 179.76009 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 6 5.0096 2.3214 -1.4425 7 6 5.9258 1.4739 0.7230 8 6 6.9386 2.6221 0.7709 9 6 6.2934 3.8291 1.4589 10 6 5.0159 4.2123 0.7076 11 1 5.2678 4.5078 -0.3109 12 6 4.3435 5.3620 1.4127 13 1 4.7834 5.7788 2.3067 14 6 3.1671 5.8823 0.9162 15 7 2.6321 5.3756 -0.1731 16 14 2.3342 7.3079 1.7898 17 1 3.1320 7.6921 2.9819 18 1 2.2359 8.4657 0.8652 19 1 0.9721 6.8987 2.2171 20 8 4.1305 3.0910 0.6732 21 6 3.9750 -0.4478 -0.0043 22 16 2.5209 -1.4372 0.0007 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8669 2.0894 -0.0009 27 1 5.7508 3.1206 -1.4427 28 1 4.1101 2.6599 -1.9567 29 1 5.4152 1.4495 -1.9558 30 1 5.6719 1.1696 1.7384 31 1 6.3576 0.6295 0.1859 32 1 7.2302 2.8936 -0.2437 33 1 7.8192 2.3101 1.3323 34 1 6.9882 4.6689 1.4481 35 1 6.0471 3.5734 2.4895 36 1 1.8043 5.7413 -0.5222 37 1 4.9863 -0.8272 -0.0083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381337038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = -27.256793 kcal Electronic energy + Delta-G solvation = -18900.175807 eV Core-core repulsion = 16154.635871 eV Total energy + Delta-G solvation = -2745.539935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35439 -36.94598 -33.28350 -32.43494 -31.94604 -30.04935 -27.57441 -26.42863 -25.01138 -23.55487 -22.09331 -20.49875 -18.78921 -17.76638 -16.76058 -16.57828 -15.18769 -14.73688 -14.45614 -14.06292 -13.86729 -13.49647 -13.26878 -12.73120 -12.64895 -12.37108 -11.96870 -11.79029 -11.76549 -11.51571 -11.43117 -11.03875 -10.93894 -10.75212 -10.52117 -10.43739 -10.29919 -10.15095 -9.79305 -9.53332 -8.83344 -8.46764 -8.14050 -8.00150 -7.70549 -6.00920 -4.11949 1.42936 2.04180 2.36247 3.26803 3.30145 3.37952 3.41700 4.42074 4.96381 5.12274 5.35981 5.47757 5.54393 5.59418 5.61739 5.71717 5.73993 5.93802 5.99889 6.02844 6.12918 6.22717 6.29864 6.33466 6.46050 6.55761 6.59231 6.72792 6.82015 6.89350 6.94153 6.97727 7.07431 7.18280 7.56165 7.90808 8.30556 8.79998 9.15363 9.57691 11.06217 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.007510 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.825718 B = 3727.573954 C = 4872.792640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.191 4.191 3 C -0.098 4.098 4 C -0.056 4.056 5 C 0.165 3.835 6 C -0.161 4.161 7 C -0.134 4.134 8 C -0.121 4.121 9 C -0.145 4.145 10 C 0.218 3.782 11 H 0.020 0.980 12 C -0.524 4.524 13 H 0.063 0.937 14 C 0.079 3.921 15 N -0.858 5.858 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.283 1.283 20 O -0.341 6.341 21 C -0.222 4.222 22 S 0.046 5.954 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.259 0.741 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -10.810 -1.498 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.307 4.307 3 C -0.128 4.128 4 C -0.069 4.069 5 C 0.122 3.878 6 C -0.219 4.219 7 C -0.172 4.172 8 C -0.159 4.159 9 C -0.183 4.183 10 C 0.162 3.838 11 H 0.038 0.962 12 C -0.562 4.562 13 H 0.081 0.919 14 C -0.126 4.126 15 N -0.494 5.494 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 O -0.260 6.260 21 C -0.356 4.356 22 S 0.309 5.691 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.172 0.828 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.546 -12.370 -1.538 12.477 hybrid contribution 0.138 2.161 0.348 2.193 sum 0.684 -10.209 -1.190 10.301 Atomic orbital electron populations 1.20262 0.88293 1.02712 1.02249 1.24336 0.99504 0.95037 1.11810 1.20215 0.92409 1.00094 1.00055 1.18848 0.94815 0.93261 0.99942 1.19675 0.89053 0.87041 0.92037 1.22296 1.02498 1.00621 0.96498 1.22160 0.96490 0.97668 1.00914 1.21661 0.97249 0.96409 1.00563 1.22271 0.99726 0.96039 1.00282 1.19744 0.85477 0.83816 0.94750 0.96227 1.21048 1.09415 1.13141 1.12566 0.91887 1.25032 0.96843 0.96245 0.94528 1.70041 1.18831 1.40054 1.20465 0.86610 0.79613 0.82293 0.79886 1.19693 1.20977 1.20906 1.88404 1.42641 1.20060 1.74917 1.25196 1.00917 0.95830 1.13675 1.83808 0.98017 1.10983 1.76306 0.91243 0.91959 0.90507 0.82764 0.91676 0.91659 0.93699 0.91780 0.92639 0.92354 0.93213 0.92548 0.92591 0.93151 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.38 36.00 0.37 -0.63 16 2 C -0.19 -3.14 6.51 -36.00 -0.23 -3.37 16 3 C -0.10 -1.92 9.39 -41.21 -0.39 -2.31 16 4 C -0.06 -1.07 4.72 -106.25 -0.50 -1.57 16 5 C 0.17 3.35 0.98 -91.72 -0.09 3.26 16 6 C -0.16 -3.12 7.92 37.16 0.29 -2.83 16 7 C -0.13 -2.38 4.24 -26.59 -0.11 -2.49 16 8 C -0.12 -2.14 5.72 -26.54 -0.15 -2.29 16 9 C -0.15 -3.06 5.36 -26.59 -0.14 -3.21 16 10 C 0.22 5.47 2.17 -27.84 -0.06 5.41 16 11 H 0.02 0.54 6.34 -51.93 -0.33 0.21 16 12 C -0.52 -14.50 8.79 -34.44 -0.30 -14.81 16 13 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 14 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 15 N -0.86 -24.36 12.84 55.43 0.71 -23.65 16 16 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 O -0.34 -8.52 8.58 -35.23 -0.30 -8.83 16 21 C -0.22 -3.59 10.22 29.04 0.30 -3.29 16 22 S 0.05 0.68 23.33 -107.50 -2.51 -1.83 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.15 3.44 7.82 -52.49 -0.41 3.03 16 27 H 0.06 1.28 4.97 -51.93 -0.26 1.02 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.84 7.01 -51.93 -0.36 0.47 16 32 H 0.06 1.00 6.62 -51.93 -0.34 0.65 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.16 2.22 6.86 -52.48 -0.36 1.86 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -28.85 306.35 -9.03 -37.88 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.41 Total: 1.75 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -1.12 Total: -26.04 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.71 Total: -23.65 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.30 Total: -8.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.85 -9.03 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381337038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.622 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds