Wall clock time and date at job start Mon Mar 30 2020 06:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33389 * 125.20585 * 2 1 4 4 C 1.38422 * 114.92136 * 179.97438 * 3 2 1 5 5 C 1.50707 * 122.53618 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.48028 * 269.99764 * 5 4 3 7 7 C 1.53095 * 109.48536 * 149.97117 * 5 4 3 8 8 C 1.53179 * 109.16072 * 182.40095 * 7 5 4 9 9 C 1.53181 * 109.03457 * 56.98109 * 8 7 5 10 10 C 1.53087 * 109.16284 * 303.01658 * 9 8 7 11 11 H 1.08999 * 109.48633 * 297.62739 * 10 9 8 12 12 C 1.50703 * 109.49190 * 177.59689 * 10 9 8 13 13 H 1.08004 * 119.99786 * 0.05624 * 12 10 9 14 14 C 1.37879 * 120.00497 * 180.02562 * 12 10 9 15 15 N 1.31509 * 119.99641 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 119.99978 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47388 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47099 * 119.99974 * 16 14 12 19 19 H 1.48504 * 109.46585 * 239.99300 * 16 14 12 20 20 O 1.42903 * 109.47875 * 30.02376 * 5 4 3 21 21 C 1.33385 * 114.92056 * 0.24966 * 4 3 2 22 22 S 1.75882 * 109.59485 * 359.63452 * 21 4 3 23 23 H 1.08996 * 109.47008 * 89.99565 * 1 2 3 24 24 H 1.08998 * 109.47515 * 209.99829 * 1 2 3 25 25 H 1.09004 * 109.46857 * 329.99813 * 1 2 3 26 26 H 1.08001 * 122.53540 * 359.94511 * 3 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.46832 * 60.02619 * 6 5 4 29 29 H 1.09004 * 109.47261 * 300.02600 * 6 5 4 30 30 H 1.08997 * 109.52582 * 302.30488 * 7 5 4 31 31 H 1.08995 * 109.52520 * 62.50008 * 7 5 4 32 32 H 1.08999 * 109.54339 * 297.11667 * 8 7 5 33 33 H 1.08999 * 109.61786 * 176.88816 * 8 7 5 34 34 H 1.09000 * 109.52198 * 183.11172 * 9 8 7 35 35 H 1.08993 * 109.57498 * 62.95581 * 9 8 7 36 36 H 0.97001 * 120.00112 * 179.97438 * 15 14 12 37 37 H 1.08008 * 125.20077 * 179.76009 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 6 5.0096 2.3214 -1.4425 7 6 5.9258 1.4739 0.7230 8 6 6.9386 2.6221 0.7709 9 6 6.2934 3.8291 1.4589 10 6 5.0159 4.2123 0.7076 11 1 5.2678 4.5078 -0.3109 12 6 4.3435 5.3620 1.4127 13 1 4.7834 5.7788 2.3067 14 6 3.1671 5.8823 0.9162 15 7 2.6321 5.3756 -0.1731 16 14 2.3342 7.3079 1.7898 17 1 3.1320 7.6921 2.9819 18 1 2.2359 8.4657 0.8652 19 1 0.9721 6.8987 2.2171 20 8 4.1305 3.0910 0.6732 21 6 3.9750 -0.4478 -0.0043 22 16 2.5209 -1.4372 0.0007 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.8669 2.0894 -0.0009 27 1 5.7508 3.1206 -1.4427 28 1 4.1101 2.6599 -1.9567 29 1 5.4152 1.4495 -1.9558 30 1 5.6719 1.1696 1.7384 31 1 6.3576 0.6295 0.1859 32 1 7.2302 2.8936 -0.2437 33 1 7.8192 2.3101 1.3323 34 1 6.9882 4.6689 1.4481 35 1 6.0471 3.5734 2.4895 36 1 1.8043 5.7413 -0.5222 37 1 4.9863 -0.8272 -0.0083 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381337038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:23 Heat of formation + Delta-G solvation = -42.685886 kcal Electronic energy + Delta-G solvation = -18900.844862 eV Core-core repulsion = 16154.635871 eV Total energy + Delta-G solvation = -2746.208991 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90746 -38.43040 -35.09975 -34.09027 -33.59125 -31.55324 -29.29616 -27.80099 -26.76464 -24.99874 -23.79975 -22.02676 -20.26274 -19.31374 -18.63177 -18.03723 -16.87696 -16.39666 -16.27962 -15.57066 -15.34700 -14.82677 -14.71967 -14.37434 -14.10052 -13.92946 -13.46772 -13.19791 -13.13871 -13.03958 -12.84034 -12.80153 -12.70892 -12.42110 -12.28341 -11.94823 -11.77720 -11.66674 -11.62017 -11.16392 -10.81669 -10.41719 -9.67160 -9.41225 -9.09535 -8.11224 -6.30092 0.11636 0.79489 1.05565 1.38508 1.40400 1.51846 1.84938 2.41187 3.06892 3.67153 3.80911 4.08889 4.13476 4.18363 4.32696 4.40278 4.45430 4.48049 4.58815 4.71356 4.72381 4.80064 4.83855 4.96101 5.01351 5.08162 5.13393 5.17930 5.24780 5.31012 5.37261 5.46158 5.56226 5.62890 5.76104 5.84930 6.27762 6.72072 7.30977 7.45666 8.95403 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018407 B = 0.007510 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.825718 B = 3727.573954 C = 4872.792640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.192 4.192 3 C -0.137 4.137 4 C -0.087 4.087 5 C 0.154 3.846 6 C -0.152 4.152 7 C -0.128 4.128 8 C -0.116 4.116 9 C -0.140 4.140 10 C 0.217 3.783 11 H -0.008 1.008 12 C -0.552 4.552 13 H 0.059 0.941 14 C 0.030 3.970 15 N -0.887 5.887 16 Si 0.953 3.047 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.283 1.283 20 O -0.373 6.373 21 C -0.216 4.216 22 S 0.122 5.878 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.259 0.741 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -13.301 -1.148 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.309 4.309 3 C -0.167 4.167 4 C -0.099 4.099 5 C 0.112 3.888 6 C -0.210 4.210 7 C -0.166 4.166 8 C -0.153 4.153 9 C -0.178 4.178 10 C 0.162 3.838 11 H 0.009 0.991 12 C -0.589 4.589 13 H 0.077 0.923 14 C -0.173 4.173 15 N -0.524 5.524 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.209 1.209 20 O -0.293 6.293 21 C -0.351 4.351 22 S 0.386 5.614 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.297 -14.864 -1.186 14.968 hybrid contribution -0.138 2.823 0.206 2.834 sum 1.159 -12.041 -0.981 12.136 Atomic orbital electron populations 1.20387 0.86351 1.03533 1.03461 1.24763 1.01236 0.95592 1.09326 1.19974 0.93638 0.99050 1.04028 1.18774 0.94190 0.94139 1.02827 1.19971 0.90834 0.86016 0.92025 1.22200 1.00756 1.01522 0.96482 1.22120 0.95084 0.98704 1.00652 1.21641 0.98020 0.94700 1.00929 1.22144 0.98136 0.98085 0.99476 1.19544 0.86996 0.83910 0.93399 0.99093 1.21462 1.10030 1.14823 1.12623 0.92300 1.25821 0.97500 0.98789 0.95231 1.70175 1.19109 1.41363 1.21784 0.85597 0.78292 0.79273 0.78980 1.18984 1.20099 1.20856 1.88295 1.43780 1.21363 1.75851 1.25524 1.03163 0.94984 1.11407 1.83528 0.95607 1.08010 1.74304 0.89752 0.89396 0.91428 0.87396 0.92625 0.94929 0.90392 0.92368 0.88943 0.91785 0.89905 0.92133 0.93518 0.93232 0.79582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 10.38 71.24 0.74 -1.25 16 2 C -0.19 -6.18 6.51 24.59 0.16 -6.02 16 3 C -0.14 -5.56 9.39 21.22 0.20 -5.36 16 4 C -0.09 -3.30 4.72 -20.92 -0.10 -3.40 16 5 C 0.15 6.30 0.98 -11.51 -0.01 6.29 16 6 C -0.15 -5.98 7.92 71.98 0.57 -5.41 16 7 C -0.13 -4.26 4.24 30.69 0.13 -4.13 16 8 C -0.12 -3.85 5.72 30.71 0.18 -3.68 16 9 C -0.14 -5.97 5.36 30.68 0.16 -5.80 16 10 C 0.22 11.40 2.17 29.88 0.06 11.46 16 11 H -0.01 -0.48 6.34 -2.39 -0.02 -0.49 16 12 C -0.55 -31.84 8.79 25.60 0.23 -31.62 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.03 1.70 5.40 84.66 0.46 2.15 16 15 N -0.89 -53.14 12.84 21.45 0.28 -52.86 16 16 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 O -0.37 -19.57 8.58 -148.98 -1.28 -20.85 16 21 C -0.22 -6.39 10.22 66.72 0.68 -5.71 16 22 S 0.12 3.18 23.33 -56.49 -1.32 1.86 16 23 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.11 5.31 7.82 -2.91 -0.02 5.29 16 27 H 0.05 2.24 4.97 -2.39 -0.01 2.23 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.39 7.01 -2.39 -0.02 2.38 16 32 H 0.06 2.07 6.62 -2.39 -0.02 2.05 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.19 4.33 6.86 -2.91 -0.02 4.31 16 Total: -1.00 -66.37 306.35 4.21 -62.16 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.05 Total: 15.37 kcal Atomic # 6 Polarization: -55.93 SS G_CDS: 3.46 Total: -52.47 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.28 Total: -52.86 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.28 Total: -20.85 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.32 Total: 1.86 kcal Total: -66.37 4.21 -62.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381337038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.474 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds