Wall clock time and date at job start Mon Mar 30 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20551 * 2 1 4 4 C 1.38429 * 114.91737 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.53460 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.48049 * 270.02384 * 5 4 3 7 7 C 1.53099 * 109.47659 * 150.00072 * 5 4 3 8 8 C 1.53176 * 109.16256 * 182.40860 * 7 5 4 9 9 C 1.53175 * 109.03581 * 56.98028 * 8 7 5 10 10 C 1.53091 * 109.16660 * 303.02110 * 9 8 7 11 11 H 1.08998 * 109.48471 * 177.59012 * 10 9 8 12 12 C 1.50699 * 109.48067 * 297.61435 * 10 9 8 13 13 H 1.08003 * 119.99574 * 5.53021 * 12 10 9 14 14 C 1.37878 * 120.00362 * 185.52911 * 12 10 9 15 15 N 1.31514 * 119.99569 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00129 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47391 * 60.00187 * 16 14 12 18 18 H 1.48500 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47327 * 300.00200 * 16 14 12 20 20 O 1.42903 * 109.48078 * 30.06036 * 5 4 3 21 21 C 1.33387 * 114.92520 * 359.97438 * 4 3 2 22 22 S 1.75889 * 125.19747 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46594 * 89.99835 * 1 2 3 24 24 H 1.08990 * 109.47708 * 210.00237 * 1 2 3 25 25 H 1.09002 * 109.46860 * 330.00282 * 1 2 3 26 26 H 1.07998 * 122.54406 * 0.24511 * 3 2 1 27 27 H 1.08996 * 109.47303 * 77.48809 * 6 5 4 28 28 H 1.08999 * 109.46821 * 197.48603 * 6 5 4 29 29 H 1.08992 * 109.47343 * 317.48403 * 6 5 4 30 30 H 1.09000 * 109.52066 * 302.31563 * 7 5 4 31 31 H 1.08994 * 109.51953 * 62.50243 * 7 5 4 32 32 H 1.08997 * 109.54587 * 176.84885 * 8 7 5 33 33 H 1.08995 * 109.54331 * 297.02858 * 8 7 5 34 34 H 1.09005 * 109.52227 * 62.92636 * 9 8 7 35 35 H 1.08999 * 109.52791 * 183.04959 * 9 8 7 36 36 H 0.97003 * 120.00065 * 179.97438 * 15 14 12 37 37 H 1.08001 * 125.20672 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0006 5 6 4.6624 1.9480 0.0001 6 6 5.0092 2.3216 -1.4425 7 6 5.9260 1.4732 0.7225 8 6 6.9390 2.6212 0.7706 9 6 6.2943 3.8279 1.4595 10 6 5.0164 4.2117 0.7087 11 1 4.5305 5.0430 1.2195 12 6 5.3645 4.6212 -0.6992 13 1 6.3799 4.5245 -1.0542 14 6 4.3867 5.1194 -1.5340 15 7 3.1504 5.2376 -1.1013 16 14 4.8184 5.6277 -3.2788 17 1 5.3575 4.4570 -4.0164 18 1 3.5997 6.1271 -3.9648 19 1 5.8413 6.7036 -3.2423 20 8 4.1309 3.0906 0.6740 21 6 3.9751 -0.4479 0.0016 22 16 2.5208 -1.4373 0.0006 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3634 -0.8898 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8671 2.0894 0.0039 27 1 4.2131 2.9383 -1.8595 28 1 5.9462 2.8784 -1.4583 29 1 5.1155 1.4145 -2.0372 30 1 5.6724 1.1684 1.7377 31 1 6.3575 0.6290 0.1847 32 1 7.8189 2.3078 1.3324 33 1 7.2315 2.8922 -0.2438 34 1 6.0481 3.5706 2.4897 35 1 6.9895 4.6673 1.4499 36 1 2.4626 5.5884 -1.6885 37 1 4.9863 -0.8274 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381337042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:28 Heat of formation + Delta-G solvation = -11.504537 kcal Electronic energy + Delta-G solvation = -19294.930558 eV Core-core repulsion = 16550.073692 eV Total energy + Delta-G solvation = -2744.856866 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40827 -37.00619 -32.97268 -32.38160 -32.13012 -29.94364 -27.71225 -26.26879 -24.48431 -23.37501 -22.36401 -20.37744 -18.79200 -18.00131 -16.71285 -16.06420 -15.55539 -14.67077 -14.03269 -13.77359 -13.75220 -13.48205 -13.30039 -12.70647 -12.57077 -12.18062 -12.05363 -11.76729 -11.69721 -11.35180 -11.28527 -11.04193 -10.85518 -10.68558 -10.44217 -10.36579 -10.04119 -9.95572 -9.65424 -9.39800 -8.69469 -8.28816 -8.09549 -7.96492 -7.66151 -6.02504 -4.03351 1.48348 2.08898 2.41307 3.26931 3.32855 3.34159 3.35658 4.37607 5.04338 5.17546 5.40636 5.51926 5.63969 5.70636 5.74210 5.74835 5.83323 6.05948 6.18082 6.23385 6.27790 6.32474 6.47015 6.59346 6.67233 6.70532 6.84232 6.90078 6.99203 7.03071 7.10574 7.15151 7.36455 7.65047 7.84859 7.87431 8.20323 8.80439 9.05561 9.54192 11.02460 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.007930 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.472030 B = 3530.137006 C = 4208.534394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.192 4.192 3 C -0.098 4.098 4 C -0.057 4.057 5 C 0.190 3.810 6 C -0.150 4.150 7 C -0.133 4.133 8 C -0.112 4.112 9 C -0.142 4.142 10 C 0.211 3.789 11 H 0.066 0.934 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.080 3.920 15 N -0.860 5.860 16 Si 0.873 3.127 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.365 6.365 21 C -0.222 4.222 22 S 0.042 5.958 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.151 0.849 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.008 0.992 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -9.629 1.980 9.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.309 4.309 3 C -0.128 4.128 4 C -0.069 4.069 5 C 0.147 3.853 6 C -0.207 4.207 7 C -0.171 4.171 8 C -0.149 4.149 9 C -0.180 4.180 10 C 0.155 3.845 11 H 0.083 0.917 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.125 4.125 15 N -0.497 5.497 16 Si 0.700 3.300 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.285 6.285 21 C -0.356 4.356 22 S 0.305 5.695 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.169 0.831 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.023 -11.140 2.029 11.369 hybrid contribution 0.836 1.767 -1.165 2.276 sum -0.186 -9.373 0.864 9.414 Atomic orbital electron populations 1.20252 0.88344 1.02595 1.02238 1.24328 0.99434 0.95128 1.11967 1.20169 0.92484 0.99825 1.00339 1.19020 0.94993 0.93616 0.99287 1.19407 0.87909 0.84727 0.93219 1.22872 1.05547 0.98265 0.94025 1.22139 0.97031 0.97772 1.00142 1.21519 0.96500 0.95520 1.01371 1.22186 1.00386 0.97217 0.98238 1.19728 0.85333 0.84846 0.94557 0.91677 1.21376 0.95080 1.43822 0.98049 0.92342 1.24902 0.94987 0.94702 0.97914 1.70006 1.00723 1.43165 1.35784 0.86985 0.78027 0.79289 0.85694 1.19800 1.21210 1.20174 1.87944 1.43579 1.21300 1.75629 1.25182 1.00808 0.95792 1.13858 1.83785 0.98180 1.11029 1.76506 0.91286 0.91982 0.90599 0.83116 0.90457 0.89204 0.97355 0.92573 0.92737 0.94033 0.90999 0.94075 0.92481 0.92930 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.38 36.01 0.37 -0.61 16 2 C -0.19 -3.20 6.51 -36.00 -0.23 -3.43 16 3 C -0.10 -1.94 9.39 -41.21 -0.39 -2.33 16 4 C -0.06 -1.13 4.65 -106.25 -0.49 -1.63 16 5 C 0.19 4.07 0.98 -91.72 -0.09 3.98 16 6 C -0.15 -3.37 6.97 37.16 0.26 -3.11 16 7 C -0.13 -2.48 4.23 -26.59 -0.11 -2.59 16 8 C -0.11 -2.09 5.62 -26.55 -0.15 -2.24 16 9 C -0.14 -2.92 5.60 -26.59 -0.15 -3.06 16 10 C 0.21 5.14 3.07 -27.84 -0.09 5.06 16 11 H 0.07 1.74 8.14 -51.93 -0.42 1.31 16 12 C -0.55 -13.81 4.70 -34.44 -0.16 -13.97 16 13 H 0.06 1.46 6.04 -52.48 -0.32 1.14 16 14 C 0.08 2.09 3.41 -17.82 -0.06 2.03 16 15 N -0.86 -23.77 13.07 55.43 0.72 -23.05 16 16 Si 0.87 20.39 29.26 -169.99 -4.97 15.42 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 O -0.37 -8.98 9.17 -35.23 -0.32 -9.30 16 21 C -0.22 -3.79 10.22 29.04 0.30 -3.50 16 22 S 0.04 0.64 23.33 -107.50 -2.51 -1.86 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.15 3.30 7.82 -52.49 -0.41 2.88 16 27 H 0.08 1.96 5.57 -51.93 -0.29 1.67 16 28 H 0.09 2.04 3.48 -51.93 -0.18 1.86 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.91 7.01 -51.93 -0.36 0.54 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.40 5.33 -51.93 -0.28 1.12 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 37 H 0.16 2.39 6.85 -52.49 -0.36 2.03 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -27.14 295.43 -8.75 -35.90 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.13 Total: 3.87 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -0.99 Total: -25.41 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.72 Total: -23.05 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.32 Total: -9.30 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.97 Total: 15.42 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.14 -8.75 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381337042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.392 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds