Wall clock time and date at job start Mon Mar 30 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20551 * 2 1 4 4 C 1.38429 * 114.91737 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.53460 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.48049 * 270.02384 * 5 4 3 7 7 C 1.53099 * 109.47659 * 150.00072 * 5 4 3 8 8 C 1.53176 * 109.16256 * 182.40860 * 7 5 4 9 9 C 1.53175 * 109.03581 * 56.98028 * 8 7 5 10 10 C 1.53091 * 109.16660 * 303.02110 * 9 8 7 11 11 H 1.08998 * 109.48471 * 177.59012 * 10 9 8 12 12 C 1.50699 * 109.48067 * 297.61435 * 10 9 8 13 13 H 1.08003 * 119.99574 * 5.53021 * 12 10 9 14 14 C 1.37878 * 120.00362 * 185.52911 * 12 10 9 15 15 N 1.31514 * 119.99569 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00129 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47391 * 60.00187 * 16 14 12 18 18 H 1.48500 * 109.47291 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.47327 * 300.00200 * 16 14 12 20 20 O 1.42903 * 109.48078 * 30.06036 * 5 4 3 21 21 C 1.33387 * 114.92520 * 359.97438 * 4 3 2 22 22 S 1.75889 * 125.19747 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.46594 * 89.99835 * 1 2 3 24 24 H 1.08990 * 109.47708 * 210.00237 * 1 2 3 25 25 H 1.09002 * 109.46860 * 330.00282 * 1 2 3 26 26 H 1.07998 * 122.54406 * 0.24511 * 3 2 1 27 27 H 1.08996 * 109.47303 * 77.48809 * 6 5 4 28 28 H 1.08999 * 109.46821 * 197.48603 * 6 5 4 29 29 H 1.08992 * 109.47343 * 317.48403 * 6 5 4 30 30 H 1.09000 * 109.52066 * 302.31563 * 7 5 4 31 31 H 1.08994 * 109.51953 * 62.50243 * 7 5 4 32 32 H 1.08997 * 109.54587 * 176.84885 * 8 7 5 33 33 H 1.08995 * 109.54331 * 297.02858 * 8 7 5 34 34 H 1.09005 * 109.52227 * 62.92636 * 9 8 7 35 35 H 1.08999 * 109.52791 * 183.04959 * 9 8 7 36 36 H 0.97003 * 120.00065 * 179.97438 * 15 14 12 37 37 H 1.08001 * 125.20672 * 180.02562 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0006 5 6 4.6624 1.9480 0.0001 6 6 5.0092 2.3216 -1.4425 7 6 5.9260 1.4732 0.7225 8 6 6.9390 2.6212 0.7706 9 6 6.2943 3.8279 1.4595 10 6 5.0164 4.2117 0.7087 11 1 4.5305 5.0430 1.2195 12 6 5.3645 4.6212 -0.6992 13 1 6.3799 4.5245 -1.0542 14 6 4.3867 5.1194 -1.5340 15 7 3.1504 5.2376 -1.1013 16 14 4.8184 5.6277 -3.2788 17 1 5.3575 4.4570 -4.0164 18 1 3.5997 6.1271 -3.9648 19 1 5.8413 6.7036 -3.2423 20 8 4.1309 3.0906 0.6740 21 6 3.9751 -0.4479 0.0016 22 16 2.5208 -1.4373 0.0006 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3634 -0.8898 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.8671 2.0894 0.0039 27 1 4.2131 2.9383 -1.8595 28 1 5.9462 2.8784 -1.4583 29 1 5.1155 1.4145 -2.0372 30 1 5.6724 1.1684 1.7377 31 1 6.3575 0.6290 0.1847 32 1 7.8189 2.3078 1.3324 33 1 7.2315 2.8922 -0.2438 34 1 6.0481 3.5706 2.4897 35 1 6.9895 4.6673 1.4499 36 1 2.4626 5.5884 -1.6885 37 1 4.9863 -0.8274 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381337042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:27 Heat of formation + Delta-G solvation = -25.664447 kcal Electronic energy + Delta-G solvation = -19295.544578 eV Core-core repulsion = 16550.073692 eV Total energy + Delta-G solvation = -2745.470886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.03602 -38.49891 -34.74301 -34.11148 -33.71819 -31.42073 -29.57624 -27.58576 -26.24997 -24.92647 -24.02123 -21.92241 -20.35946 -19.65403 -18.17991 -17.78251 -17.16315 -16.47858 -15.67455 -15.48946 -15.28460 -14.89669 -14.73039 -14.32136 -13.91482 -13.83406 -13.61275 -13.26709 -13.10214 -12.98097 -12.80974 -12.70401 -12.56260 -12.43863 -12.20959 -11.80315 -11.67691 -11.52924 -11.38724 -11.11626 -10.51399 -10.29068 -9.65252 -9.40275 -9.07139 -8.04516 -6.08924 0.13283 0.80847 1.06886 1.39173 1.41134 1.45741 1.87973 2.42335 3.15202 3.68800 3.87307 4.15728 4.23456 4.28297 4.38168 4.47164 4.56465 4.68947 4.70206 4.73076 4.80603 4.96437 4.97690 5.06301 5.11274 5.18144 5.28695 5.30884 5.40628 5.43516 5.49239 5.55854 5.72624 5.80678 5.86942 6.04326 6.24260 6.82480 7.23168 7.52759 9.00790 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.007930 C = 0.006652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.472030 B = 3530.137006 C = 4208.534394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.190 4.190 3 C -0.137 4.137 4 C -0.089 4.089 5 C 0.183 3.817 6 C -0.142 4.142 7 C -0.127 4.127 8 C -0.108 4.108 9 C -0.137 4.137 10 C 0.206 3.794 11 H 0.025 0.975 12 C -0.539 4.539 13 H 0.063 0.937 14 C 0.039 3.961 15 N -0.897 5.897 16 Si 0.923 3.077 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.269 1.269 20 O -0.391 6.391 21 C -0.221 4.221 22 S 0.117 5.883 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.256 0.744 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -12.446 1.818 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.307 4.307 3 C -0.167 4.167 4 C -0.101 4.101 5 C 0.141 3.859 6 C -0.199 4.199 7 C -0.165 4.165 8 C -0.146 4.146 9 C -0.175 4.175 10 C 0.149 3.851 11 H 0.043 0.957 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.162 4.162 15 N -0.535 5.535 16 Si 0.749 3.251 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.194 1.194 20 O -0.311 6.311 21 C -0.356 4.356 22 S 0.380 5.620 23 H 0.100 0.900 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.129 0.871 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.173 -13.961 1.866 14.086 hybrid contribution 0.400 2.544 -1.083 2.794 sum 0.573 -11.416 0.782 11.457 Atomic orbital electron populations 1.20394 0.86118 1.03767 1.03391 1.24788 1.01274 0.95442 1.09212 1.19957 0.93414 0.99096 1.04212 1.18956 0.94594 0.94338 1.02183 1.19596 0.89826 0.84182 0.92325 1.22707 1.03725 0.98187 0.95281 1.22097 0.95581 0.98545 1.00284 1.21508 0.97483 0.94496 1.01066 1.22073 0.98530 0.98605 0.98255 1.19616 0.86663 0.84421 0.94352 0.95732 1.21576 0.94963 1.42637 0.98466 0.91892 1.25491 0.94831 0.94969 1.00947 1.70145 1.01665 1.44888 1.36812 0.86177 0.77602 0.79190 0.82154 1.19070 1.21758 1.19404 1.87883 1.44601 1.22335 1.76235 1.25487 1.03013 0.95163 1.11910 1.83512 0.95689 1.08253 1.74520 0.90027 0.89368 0.90905 0.87096 0.94052 0.89756 0.95784 0.92218 0.89967 0.90621 0.91890 0.93364 0.91894 0.93480 0.80070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.38 71.24 0.74 -1.18 16 2 C -0.19 -6.11 6.51 24.59 0.16 -5.95 16 3 C -0.14 -5.54 9.39 21.22 0.20 -5.34 16 4 C -0.09 -3.48 4.65 -20.92 -0.10 -3.58 16 5 C 0.18 7.81 0.98 -11.51 -0.01 7.80 16 6 C -0.14 -6.38 6.97 71.98 0.50 -5.88 16 7 C -0.13 -4.46 4.23 30.69 0.13 -4.33 16 8 C -0.11 -3.79 5.62 30.71 0.17 -3.62 16 9 C -0.14 -5.53 5.60 30.68 0.17 -5.36 16 10 C 0.21 10.37 3.07 29.88 0.09 10.46 16 11 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 12 C -0.54 -27.89 4.70 25.60 0.12 -27.77 16 13 H 0.06 3.15 6.04 -2.91 -0.02 3.13 16 14 C 0.04 2.11 3.41 84.65 0.29 2.40 16 15 N -0.90 -52.23 13.07 21.45 0.28 -51.95 16 16 Si 0.92 42.66 29.26 68.60 2.01 44.67 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 O -0.39 -19.99 9.17 -148.98 -1.37 -21.35 16 21 C -0.22 -6.95 10.22 66.72 0.68 -6.27 16 22 S 0.12 3.16 23.33 -56.49 -1.32 1.84 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.11 5.29 7.82 -2.91 -0.02 5.27 16 27 H 0.04 2.14 5.57 -2.39 -0.01 2.13 16 28 H 0.08 3.80 3.48 -2.39 -0.01 3.80 16 29 H 0.02 0.96 8.01 -2.39 -0.02 0.94 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 31 H 0.08 2.42 7.01 -2.39 -0.02 2.40 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.06 2.33 5.33 -2.39 -0.01 2.31 16 34 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.18 4.72 6.85 -2.91 -0.02 4.70 16 Total: -1.00 -61.18 295.43 3.82 -57.36 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.06 Total: 18.07 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 3.15 Total: -48.64 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.28 Total: -51.95 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.37 Total: -21.35 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.01 Total: 44.67 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.32 Total: 1.84 kcal Total: -61.18 3.82 -57.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381337042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.700 kcal (2) G-P(sol) polarization free energy of solvation -61.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds