Wall clock time and date at job start Mon Mar 30 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33388 * 125.20159 * 2 1 4 4 C 1.38428 * 114.91454 * 180.20482 * 3 2 1 5 5 C 1.50700 * 122.53558 * 179.75622 * 4 3 2 6 6 C 1.52994 * 109.89459 * 89.21859 * 5 4 3 7 7 C 1.54385 * 109.83026 * 210.15058 * 5 4 3 8 8 C 1.55309 * 102.25295 * 140.87316 * 7 5 4 9 9 C 1.54948 * 100.94037 * 325.86663 * 8 7 5 10 10 C 1.52997 * 110.39373 * 155.40383 * 9 8 7 11 11 C 1.50706 * 110.30719 * 277.53026 * 9 8 7 12 12 H 1.07995 * 120.00167 * 356.88950 * 11 9 8 13 13 C 1.37879 * 119.99394 * 177.16649 * 11 9 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 O 1.43236 * 109.83297 * 328.28398 * 5 4 3 20 20 C 1.33392 * 114.92258 * 359.49329 * 4 3 2 21 21 S 1.75878 * 109.59265 * 0.26871 * 20 4 3 22 22 H 1.08992 * 109.47393 * 180.28866 * 1 2 3 23 23 H 1.09004 * 109.47271 * 300.29236 * 1 2 3 24 24 H 1.08998 * 109.46821 * 60.29016 * 1 2 3 25 25 H 1.07998 * 122.54274 * 359.96155 * 3 2 1 26 26 H 1.08997 * 109.47372 * 300.51646 * 6 5 4 27 27 H 1.09003 * 109.47512 * 60.52205 * 6 5 4 28 28 H 1.09006 * 109.47270 * 180.51921 * 6 5 4 29 29 H 1.08997 * 110.84897 * 259.06339 * 7 5 4 30 30 H 1.09000 * 110.84897 * 22.47983 * 7 5 4 31 31 H 1.09006 * 111.12304 * 207.94931 * 8 7 5 32 32 H 1.08998 * 111.12265 * 83.78640 * 8 7 5 33 33 H 1.08994 * 109.47139 * 181.44618 * 10 9 8 34 34 H 1.09004 * 109.47132 * 301.44891 * 10 9 8 35 35 H 1.09001 * 109.47018 * 61.44603 * 10 9 8 36 36 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 37 37 H 1.07995 * 125.19806 * 180.24999 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9481 -0.0106 6 6 5.0071 2.3463 1.4258 7 6 5.9367 1.4770 -0.7438 8 6 6.3532 2.7492 -1.5313 9 6 4.9667 3.3529 -1.8693 10 6 5.0828 4.8617 -2.0949 11 6 4.3892 2.6851 -3.0906 12 1 4.9631 1.9394 -3.6206 13 6 3.1303 3.0303 -3.5346 14 7 2.4338 3.9426 -2.8926 15 14 2.4141 2.2020 -5.0480 16 1 3.3906 1.2199 -5.5837 17 1 1.1573 1.5012 -4.6808 18 1 2.1251 3.2269 -6.0831 19 8 4.1494 3.0821 -0.7195 20 6 3.9751 -0.4479 0.0026 21 16 2.5209 -1.4372 0.0079 22 1 -0.3634 -1.0276 0.0052 23 1 -0.3634 0.5184 0.8874 24 1 -0.3633 0.5093 -0.8926 25 1 1.8669 2.0895 -0.0006 26 1 4.1051 2.6847 1.9355 27 1 5.4209 1.4861 1.9521 28 1 5.7412 3.1520 1.4132 29 1 6.7107 1.1910 -0.0316 30 1 5.7123 0.6535 -1.4216 31 1 6.8998 2.4888 -2.4377 32 1 6.9343 3.4262 -0.9051 33 1 4.0963 5.2744 -2.3060 34 1 5.4899 5.3326 -1.2001 35 1 5.7449 5.0528 -2.9394 36 1 1.5483 4.1856 -3.2052 37 1 4.9862 -0.8271 0.0044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381366995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:45 Heat of formation + Delta-G solvation = -19.660571 kcal Electronic energy + Delta-G solvation = -19267.173621 eV Core-core repulsion = 16521.963082 eV Total energy + Delta-G solvation = -2745.210539 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27185 -36.79601 -33.31510 -31.86364 -30.93842 -30.13981 -27.60287 -26.14048 -25.08284 -23.61708 -22.11485 -19.57869 -19.50946 -17.90580 -16.73499 -16.37179 -15.06690 -14.56722 -14.36389 -13.61116 -13.40003 -13.35099 -12.78194 -12.61616 -12.41192 -12.16417 -11.97784 -11.66124 -11.56175 -11.23724 -11.17062 -11.07239 -10.81327 -10.68962 -10.46393 -10.39246 -10.30884 -10.11400 -9.80550 -9.42417 -9.03380 -8.43299 -7.95734 -7.86812 -7.72381 -5.90291 -4.04698 1.61189 2.21286 2.52753 3.30802 3.39552 3.43010 3.46321 4.46501 4.96919 5.28194 5.46698 5.47773 5.61366 5.66971 5.70274 5.83141 5.86210 6.01976 6.13045 6.18902 6.22931 6.36551 6.43653 6.53635 6.61829 6.67867 6.79416 6.88925 6.93001 7.01598 7.07294 7.13290 7.25009 7.48247 7.82862 8.08483 8.39858 8.70763 9.06471 9.66414 11.11688 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.010446 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.562974 B = 2679.913751 C = 3682.643831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.192 4.192 3 C -0.090 4.090 4 C -0.061 4.061 5 C 0.165 3.835 6 C -0.142 4.142 7 C -0.133 4.133 8 C -0.146 4.146 9 C 0.232 3.768 10 C -0.129 4.129 11 C -0.532 4.532 12 H 0.054 0.946 13 C 0.087 3.913 14 N -0.859 5.859 15 Si 0.877 3.123 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 O -0.343 6.343 20 C -0.222 4.222 21 S 0.039 5.961 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.145 0.855 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.014 0.986 35 H 0.038 0.962 36 H 0.256 0.744 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -6.067 7.008 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.308 4.308 3 C -0.119 4.119 4 C -0.074 4.074 5 C 0.121 3.879 6 C -0.200 4.200 7 C -0.170 4.170 8 C -0.184 4.184 9 C 0.195 3.805 10 C -0.186 4.186 11 C -0.570 4.570 12 H 0.072 0.928 13 C -0.118 4.118 14 N -0.496 5.496 15 Si 0.705 3.295 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.211 1.211 19 O -0.262 6.262 20 C -0.356 4.356 21 S 0.301 5.699 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.699 -7.416 7.073 10.272 hybrid contribution 0.049 0.769 -1.101 1.344 sum 0.748 -6.647 5.972 8.967 Atomic orbital electron populations 1.20227 0.88567 1.01811 1.02702 1.24254 0.99283 0.95124 1.12139 1.19981 0.92469 0.99514 0.99976 1.19243 0.95201 0.93861 0.99083 1.20221 0.89584 0.86103 0.91971 1.22038 1.01402 1.00713 0.95873 1.23052 0.96095 0.99260 0.98639 1.23309 1.00163 0.96010 0.98909 1.19867 0.83608 0.92297 0.84741 1.21717 1.03066 0.96670 0.97173 1.21274 1.01645 1.23399 1.10707 0.92805 1.24868 0.96809 0.94271 0.95803 1.69967 1.11120 1.30011 1.38505 0.86785 0.79405 0.79675 0.83609 1.19878 1.20962 1.21076 1.88611 1.53612 1.43706 1.40311 1.25131 1.00593 0.95892 1.14007 1.83740 0.98388 1.11252 1.76497 0.92234 0.91119 0.90859 0.83689 0.92501 0.92864 0.92383 0.92447 0.90805 0.91541 0.93055 0.89368 0.96643 0.94275 0.93350 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 10.38 36.01 0.37 -0.72 16 2 C -0.19 -3.47 6.51 -36.00 -0.23 -3.70 16 3 C -0.09 -1.85 9.41 -41.21 -0.39 -2.24 16 4 C -0.06 -1.24 4.70 -106.25 -0.50 -1.74 16 5 C 0.16 3.35 1.12 -91.05 -0.10 3.25 16 6 C -0.14 -2.45 8.71 37.15 0.32 -2.13 16 7 C -0.13 -2.53 5.08 -24.78 -0.13 -2.65 16 8 C -0.15 -3.01 6.03 -24.48 -0.15 -3.15 16 9 C 0.23 5.66 0.74 -90.74 -0.07 5.60 16 10 C -0.13 -3.07 8.74 37.16 0.32 -2.75 16 11 C -0.53 -14.36 8.02 -34.44 -0.28 -14.63 16 12 H 0.05 1.47 7.72 -52.49 -0.41 1.07 16 13 C 0.09 2.39 5.28 -17.82 -0.09 2.30 16 14 N -0.86 -24.08 11.06 55.43 0.61 -23.47 16 15 Si 0.88 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 O -0.34 -8.43 8.95 -35.23 -0.32 -8.74 16 20 C -0.22 -3.96 9.85 29.04 0.29 -3.67 16 21 S 0.04 0.64 23.33 -107.50 -2.51 -1.87 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.15 3.26 7.87 -52.49 -0.41 2.85 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 30 H 0.07 1.47 7.01 -51.93 -0.36 1.11 16 31 H 0.07 1.34 7.98 -51.93 -0.41 0.92 16 32 H 0.05 0.97 8.06 -51.93 -0.42 0.55 16 33 H 0.09 2.33 6.18 -51.93 -0.32 2.01 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.16 2.44 7.36 -52.49 -0.39 2.05 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -28.73 312.19 -8.80 -37.53 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.65 Total: 1.66 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -0.63 Total: -26.24 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.61 Total: -23.47 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.32 Total: -8.74 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.51 Total: -1.87 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.73 -8.80 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381366995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.867 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds