Wall clock time and date at job start Mon Mar 30 2020 06:42:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.33388 * 125.20159 * 2 1
4 4 C 1.38428 * 114.91454 * 180.20482 * 3 2 1
5 5 C 1.50700 * 122.53558 * 179.75622 * 4 3 2
6 6 C 1.52994 * 109.89459 * 89.21859 * 5 4 3
7 7 C 1.54385 * 109.83026 * 210.15058 * 5 4 3
8 8 C 1.55309 * 102.25295 * 140.87316 * 7 5 4
9 9 C 1.54948 * 100.94037 * 325.86663 * 8 7 5
10 10 C 1.52997 * 110.39373 * 155.40383 * 9 8 7
11 11 C 1.50706 * 110.30719 * 277.53026 * 9 8 7
12 12 H 1.07995 * 120.00167 * 356.88950 * 11 9 8
13 13 C 1.37879 * 119.99394 * 177.16649 * 11 9 8
14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 9
15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 9
16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11
17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11
18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11
19 19 O 1.43236 * 109.83297 * 328.28398 * 5 4 3
20 20 C 1.33392 * 114.92258 * 359.49329 * 4 3 2
21 21 S 1.75878 * 109.59265 * 0.26871 * 20 4 3
22 22 H 1.08992 * 109.47393 * 180.28866 * 1 2 3
23 23 H 1.09004 * 109.47271 * 300.29236 * 1 2 3
24 24 H 1.08998 * 109.46821 * 60.29016 * 1 2 3
25 25 H 1.07998 * 122.54274 * 359.96155 * 3 2 1
26 26 H 1.08997 * 109.47372 * 300.51646 * 6 5 4
27 27 H 1.09003 * 109.47512 * 60.52205 * 6 5 4
28 28 H 1.09006 * 109.47270 * 180.51921 * 6 5 4
29 29 H 1.08997 * 110.84897 * 259.06339 * 7 5 4
30 30 H 1.09000 * 110.84897 * 22.47983 * 7 5 4
31 31 H 1.09006 * 111.12304 * 207.94931 * 8 7 5
32 32 H 1.08998 * 111.12265 * 83.78640 * 8 7 5
33 33 H 1.08994 * 109.47139 * 181.44618 * 10 9 8
34 34 H 1.09004 * 109.47132 * 301.44891 * 10 9 8
35 35 H 1.09001 * 109.47018 * 61.44603 * 10 9 8
36 36 H 0.96996 * 119.99730 * 179.97438 * 14 13 11
37 37 H 1.07995 * 125.19806 * 180.24999 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2760 1.0900 0.0000
4 6 3.6380 0.8428 -0.0045
5 6 4.6623 1.9481 -0.0106
6 6 5.0071 2.3463 1.4258
7 6 5.9367 1.4770 -0.7438
8 6 6.3532 2.7492 -1.5313
9 6 4.9667 3.3529 -1.8693
10 6 5.0828 4.8617 -2.0949
11 6 4.3892 2.6851 -3.0906
12 1 4.9631 1.9394 -3.6206
13 6 3.1303 3.0303 -3.5346
14 7 2.4338 3.9426 -2.8926
15 14 2.4141 2.2020 -5.0480
16 1 3.3906 1.2199 -5.5837
17 1 1.1573 1.5012 -4.6808
18 1 2.1251 3.2269 -6.0831
19 8 4.1494 3.0821 -0.7195
20 6 3.9751 -0.4479 0.0026
21 16 2.5209 -1.4372 0.0079
22 1 -0.3634 -1.0276 0.0052
23 1 -0.3634 0.5184 0.8874
24 1 -0.3633 0.5093 -0.8926
25 1 1.8669 2.0895 -0.0006
26 1 4.1051 2.6847 1.9355
27 1 5.4209 1.4861 1.9521
28 1 5.7412 3.1520 1.4132
29 1 6.7107 1.1910 -0.0316
30 1 5.7123 0.6535 -1.4216
31 1 6.8998 2.4888 -2.4377
32 1 6.9343 3.4262 -0.9051
33 1 4.0963 5.2744 -2.3060
34 1 5.4899 5.3326 -1.2001
35 1 5.7449 5.0528 -2.9394
36 1 1.5483 4.1856 -3.2052
37 1 4.9862 -0.8271 0.0044
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000381366995.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:42:45
Heat of formation + Delta-G solvation = -34.243910 kcal
Electronic energy + Delta-G solvation = -19267.806002 eV
Core-core repulsion = 16521.963082 eV
Total energy + Delta-G solvation = -2745.842920 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 266.108 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.85428 -38.34280 -35.11108 -33.52189 -32.66280 -31.64148 -29.21827 -27.51275
-27.14045 -25.10306 -23.63280 -21.36569 -21.03322 -19.42155 -18.60461 -17.78825
-16.76897 -16.37743 -16.03381 -15.31124 -14.84738 -14.75862 -14.52332 -13.93966
-13.92084 -13.67554 -13.45289 -13.20201 -13.11145 -12.94637 -12.88316 -12.67633
-12.52131 -12.45909 -12.18578 -12.09558 -11.98333 -11.77361 -11.36294 -11.08026
-10.82142 -10.51180 -9.70967 -9.35016 -9.08431 -7.96558 -6.15841 0.19034
0.84948 1.12049 1.34279 1.38524 1.46164 1.96750 2.43859 3.18388
3.56748 3.91097 4.02928 4.20820 4.25284 4.43157 4.48356 4.61714
4.62368 4.69389 4.75102 4.81793 4.91820 4.98258 5.06515 5.08295
5.13418 5.18502 5.22764 5.30635 5.36944 5.52783 5.60247 5.62719
5.73197 5.84902 6.13127 6.39495 6.79428 7.19070 7.58682 9.03629
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.015495 B = 0.010446 C = 0.007601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1806.562974 B = 2679.913751 C = 3682.643831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C -0.198 4.198
3 C -0.123 4.123
4 C -0.087 4.087
5 C 0.152 3.848
6 C -0.135 4.135
7 C -0.124 4.124
8 C -0.141 4.141
9 C 0.218 3.782
10 C -0.124 4.124
11 C -0.540 4.540
12 H 0.044 0.956
13 C 0.046 3.954
14 N -0.882 5.882
15 Si 0.925 3.075
16 H -0.271 1.271
17 H -0.287 1.287
18 H -0.279 1.279
19 O -0.372 6.372
20 C -0.224 4.224
21 S 0.094 5.906
22 H 0.083 0.917
23 H 0.085 0.915
24 H 0.063 0.937
25 H 0.111 0.889
26 H 0.045 0.955
27 H 0.080 0.920
28 H 0.063 0.937
29 H 0.094 0.906
30 H 0.061 0.939
31 H 0.066 0.934
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.031 0.969
35 H 0.044 0.956
36 H 0.254 0.746
37 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.265 -8.038 7.706 11.363
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.315 4.315
3 C -0.153 4.153
4 C -0.099 4.099
5 C 0.109 3.891
6 C -0.193 4.193
7 C -0.162 4.162
8 C -0.179 4.179
9 C 0.180 3.820
10 C -0.181 4.181
11 C -0.578 4.578
12 H 0.062 0.938
13 C -0.156 4.156
14 N -0.520 5.520
15 Si 0.752 3.248
16 H -0.196 1.196
17 H -0.214 1.214
18 H -0.205 1.205
19 O -0.292 6.292
20 C -0.359 4.359
21 S 0.357 5.643
22 H 0.102 0.898
23 H 0.104 0.896
24 H 0.081 0.919
25 H 0.129 0.871
26 H 0.064 0.936
27 H 0.099 0.901
28 H 0.082 0.918
29 H 0.113 0.887
30 H 0.080 0.920
31 H 0.085 0.915
32 H 0.089 0.911
33 H 0.075 0.925
34 H 0.050 0.950
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges 1.638 -9.393 7.769 12.299
hybrid contribution -0.264 1.332 -1.290 1.873
sum 1.373 -8.061 6.478 10.433
Atomic orbital electron populations
1.20333 0.86602 1.03498 1.02959 1.24719 1.01027 0.95581 1.10149
1.19857 0.93542 0.98776 1.03150 1.19285 0.94910 0.94820 1.00927
1.20555 0.90159 0.85250 0.93120 1.21980 1.01186 1.02003 0.94109
1.23024 0.96391 0.97952 0.98815 1.23229 0.98123 0.96943 0.99595
1.19921 0.85648 0.92194 0.84202 1.21626 1.01419 0.96999 0.98099
1.21541 1.01618 1.22944 1.11699 0.93819 1.25433 0.97377 0.94903
0.97898 1.70091 1.11136 1.31137 1.39633 0.86040 0.78481 0.78973
0.81328 1.19586 1.21385 1.20502 1.88557 1.54668 1.45582 1.40386
1.25442 1.02410 0.95433 1.12597 1.83495 0.96640 1.09076 1.75044
0.89774 0.89595 0.91857 0.87129 0.93567 0.90074 0.91839 0.88711
0.92037 0.91494 0.91132 0.92507 0.95013 0.93695 0.93705 0.80338
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -2.13 10.38 71.24 0.74 -1.39 16
2 C -0.20 -7.00 6.51 24.59 0.16 -6.84 16
3 C -0.12 -5.17 9.41 21.22 0.20 -4.97 16
4 C -0.09 -3.45 4.70 -20.92 -0.10 -3.55 16
5 C 0.15 6.03 1.12 -11.07 -0.01 6.02 16
6 C -0.14 -4.42 8.71 71.98 0.63 -3.80 16
7 C -0.12 -4.44 5.08 31.86 0.16 -4.28 16
8 C -0.14 -5.57 6.03 32.05 0.19 -5.38 16
9 C 0.22 10.64 0.74 -10.87 -0.01 10.64 16
10 C -0.12 -5.97 8.74 71.98 0.63 -5.34 16
11 C -0.54 -29.40 8.02 25.60 0.21 -29.20 16
12 H 0.04 2.40 7.72 -2.91 -0.02 2.38 16
13 C 0.05 2.57 5.28 84.66 0.45 3.02 16
14 N -0.88 -51.00 11.06 21.45 0.24 -50.76 16
15 Si 0.92 44.53 29.54 68.60 2.03 46.56 16
16 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
17 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16
18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
19 O -0.37 -18.51 8.95 -148.98 -1.33 -19.84 16
20 C -0.22 -7.50 9.85 66.72 0.66 -6.84 16
21 S 0.09 2.88 23.33 -56.49 -1.32 1.56 16
22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
25 H 0.11 5.30 7.87 -2.91 -0.02 5.28 16
26 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16
27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16
28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16
29 H 0.09 2.65 7.82 -2.39 -0.02 2.63 16
30 H 0.06 2.33 7.01 -2.39 -0.02 2.31 16
31 H 0.07 2.59 7.98 -2.38 -0.02 2.57 16
32 H 0.07 2.48 8.06 -2.39 -0.02 2.46 16
33 H 0.06 3.08 6.18 -2.39 -0.01 3.07 16
34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16
36 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16
37 H 0.18 4.99 7.36 -2.91 -0.02 4.97 16
Total: -1.00 -62.63 312.19 4.55 -58.08
By element:
Atomic # 1 Polarization: 15.27 SS G_CDS: 1.04 Total: 16.31 kcal
Atomic # 6 Polarization: -55.80 SS G_CDS: 3.90 Total: -51.90 kcal
Atomic # 7 Polarization: -51.00 SS G_CDS: 0.24 Total: -50.76 kcal
Atomic # 8 Polarization: -18.51 SS G_CDS: -1.33 Total: -19.84 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Atomic # 16 Polarization: 2.88 SS G_CDS: -1.32 Total: 1.56 kcal
Total: -62.63 4.55 -58.08 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381366995.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.834 kcal
(2) G-P(sol) polarization free energy of solvation -62.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.244 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds