Wall clock time and date at job start Mon Mar 30 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33388 * 125.20159 * 2 1 4 4 C 1.38428 * 114.91454 * 180.20482 * 3 2 1 5 5 C 1.50700 * 122.53558 * 179.75622 * 4 3 2 6 6 C 1.52994 * 109.89459 * 89.21859 * 5 4 3 7 7 C 1.54385 * 109.83026 * 210.15058 * 5 4 3 8 8 C 1.55309 * 102.25295 * 140.87316 * 7 5 4 9 9 C 1.54948 * 100.94037 * 325.86663 * 8 7 5 10 10 C 1.52997 * 110.39373 * 155.40383 * 9 8 7 11 11 C 1.50706 * 110.30719 * 277.53026 * 9 8 7 12 12 H 1.07995 * 120.00167 * 356.88950 * 11 9 8 13 13 C 1.37879 * 119.99394 * 177.16649 * 11 9 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 O 1.43236 * 109.83297 * 328.28398 * 5 4 3 20 20 C 1.33392 * 114.92258 * 359.49329 * 4 3 2 21 21 S 1.75878 * 109.59265 * 0.26871 * 20 4 3 22 22 H 1.08992 * 109.47393 * 180.28866 * 1 2 3 23 23 H 1.09004 * 109.47271 * 300.29236 * 1 2 3 24 24 H 1.08998 * 109.46821 * 60.29016 * 1 2 3 25 25 H 1.07998 * 122.54274 * 359.96155 * 3 2 1 26 26 H 1.08997 * 109.47372 * 300.51646 * 6 5 4 27 27 H 1.09003 * 109.47512 * 60.52205 * 6 5 4 28 28 H 1.09006 * 109.47270 * 180.51921 * 6 5 4 29 29 H 1.08997 * 110.84897 * 259.06339 * 7 5 4 30 30 H 1.09000 * 110.84897 * 22.47983 * 7 5 4 31 31 H 1.09006 * 111.12304 * 207.94931 * 8 7 5 32 32 H 1.08998 * 111.12265 * 83.78640 * 8 7 5 33 33 H 1.08994 * 109.47139 * 181.44618 * 10 9 8 34 34 H 1.09004 * 109.47132 * 301.44891 * 10 9 8 35 35 H 1.09001 * 109.47018 * 61.44603 * 10 9 8 36 36 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 37 37 H 1.07995 * 125.19806 * 180.24999 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9481 -0.0106 6 6 5.0071 2.3463 1.4258 7 6 5.9367 1.4770 -0.7438 8 6 6.3532 2.7492 -1.5313 9 6 4.9667 3.3529 -1.8693 10 6 5.0828 4.8617 -2.0949 11 6 4.3892 2.6851 -3.0906 12 1 4.9631 1.9394 -3.6206 13 6 3.1303 3.0303 -3.5346 14 7 2.4338 3.9426 -2.8926 15 14 2.4141 2.2020 -5.0480 16 1 3.3906 1.2199 -5.5837 17 1 1.1573 1.5012 -4.6808 18 1 2.1251 3.2269 -6.0831 19 8 4.1494 3.0821 -0.7195 20 6 3.9751 -0.4479 0.0026 21 16 2.5209 -1.4372 0.0079 22 1 -0.3634 -1.0276 0.0052 23 1 -0.3634 0.5184 0.8874 24 1 -0.3633 0.5093 -0.8926 25 1 1.8669 2.0895 -0.0006 26 1 4.1051 2.6847 1.9355 27 1 5.4209 1.4861 1.9521 28 1 5.7412 3.1520 1.4132 29 1 6.7107 1.1910 -0.0316 30 1 5.7123 0.6535 -1.4216 31 1 6.8998 2.4888 -2.4377 32 1 6.9343 3.4262 -0.9051 33 1 4.0963 5.2744 -2.3060 34 1 5.4899 5.3326 -1.2001 35 1 5.7449 5.0528 -2.9394 36 1 1.5483 4.1856 -3.2052 37 1 4.9862 -0.8271 0.0044 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381366995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:45 Heat of formation + Delta-G solvation = -34.243910 kcal Electronic energy + Delta-G solvation = -19267.806002 eV Core-core repulsion = 16521.963082 eV Total energy + Delta-G solvation = -2745.842920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85428 -38.34280 -35.11108 -33.52189 -32.66280 -31.64148 -29.21827 -27.51275 -27.14045 -25.10306 -23.63280 -21.36569 -21.03322 -19.42155 -18.60461 -17.78825 -16.76897 -16.37743 -16.03381 -15.31124 -14.84738 -14.75862 -14.52332 -13.93966 -13.92084 -13.67554 -13.45289 -13.20201 -13.11145 -12.94637 -12.88316 -12.67633 -12.52131 -12.45909 -12.18578 -12.09558 -11.98333 -11.77361 -11.36294 -11.08026 -10.82142 -10.51180 -9.70967 -9.35016 -9.08431 -7.96558 -6.15841 0.19034 0.84948 1.12049 1.34279 1.38524 1.46164 1.96750 2.43859 3.18388 3.56748 3.91097 4.02928 4.20820 4.25284 4.43157 4.48356 4.61714 4.62368 4.69389 4.75102 4.81793 4.91820 4.98258 5.06515 5.08295 5.13418 5.18502 5.22764 5.30635 5.36944 5.52783 5.60247 5.62719 5.73197 5.84902 6.13127 6.39495 6.79428 7.19070 7.58682 9.03629 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.010446 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.562974 B = 2679.913751 C = 3682.643831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.198 4.198 3 C -0.123 4.123 4 C -0.087 4.087 5 C 0.152 3.848 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.141 4.141 9 C 0.218 3.782 10 C -0.124 4.124 11 C -0.540 4.540 12 H 0.044 0.956 13 C 0.046 3.954 14 N -0.882 5.882 15 Si 0.925 3.075 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.279 1.279 19 O -0.372 6.372 20 C -0.224 4.224 21 S 0.094 5.906 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.254 0.746 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -8.038 7.706 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.315 4.315 3 C -0.153 4.153 4 C -0.099 4.099 5 C 0.109 3.891 6 C -0.193 4.193 7 C -0.162 4.162 8 C -0.179 4.179 9 C 0.180 3.820 10 C -0.181 4.181 11 C -0.578 4.578 12 H 0.062 0.938 13 C -0.156 4.156 14 N -0.520 5.520 15 Si 0.752 3.248 16 H -0.196 1.196 17 H -0.214 1.214 18 H -0.205 1.205 19 O -0.292 6.292 20 C -0.359 4.359 21 S 0.357 5.643 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.638 -9.393 7.769 12.299 hybrid contribution -0.264 1.332 -1.290 1.873 sum 1.373 -8.061 6.478 10.433 Atomic orbital electron populations 1.20333 0.86602 1.03498 1.02959 1.24719 1.01027 0.95581 1.10149 1.19857 0.93542 0.98776 1.03150 1.19285 0.94910 0.94820 1.00927 1.20555 0.90159 0.85250 0.93120 1.21980 1.01186 1.02003 0.94109 1.23024 0.96391 0.97952 0.98815 1.23229 0.98123 0.96943 0.99595 1.19921 0.85648 0.92194 0.84202 1.21626 1.01419 0.96999 0.98099 1.21541 1.01618 1.22944 1.11699 0.93819 1.25433 0.97377 0.94903 0.97898 1.70091 1.11136 1.31137 1.39633 0.86040 0.78481 0.78973 0.81328 1.19586 1.21385 1.20502 1.88557 1.54668 1.45582 1.40386 1.25442 1.02410 0.95433 1.12597 1.83495 0.96640 1.09076 1.75044 0.89774 0.89595 0.91857 0.87129 0.93567 0.90074 0.91839 0.88711 0.92037 0.91494 0.91132 0.92507 0.95013 0.93695 0.93705 0.80338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 10.38 71.24 0.74 -1.39 16 2 C -0.20 -7.00 6.51 24.59 0.16 -6.84 16 3 C -0.12 -5.17 9.41 21.22 0.20 -4.97 16 4 C -0.09 -3.45 4.70 -20.92 -0.10 -3.55 16 5 C 0.15 6.03 1.12 -11.07 -0.01 6.02 16 6 C -0.14 -4.42 8.71 71.98 0.63 -3.80 16 7 C -0.12 -4.44 5.08 31.86 0.16 -4.28 16 8 C -0.14 -5.57 6.03 32.05 0.19 -5.38 16 9 C 0.22 10.64 0.74 -10.87 -0.01 10.64 16 10 C -0.12 -5.97 8.74 71.98 0.63 -5.34 16 11 C -0.54 -29.40 8.02 25.60 0.21 -29.20 16 12 H 0.04 2.40 7.72 -2.91 -0.02 2.38 16 13 C 0.05 2.57 5.28 84.66 0.45 3.02 16 14 N -0.88 -51.00 11.06 21.45 0.24 -50.76 16 15 Si 0.92 44.53 29.54 68.60 2.03 46.56 16 16 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 O -0.37 -18.51 8.95 -148.98 -1.33 -19.84 16 20 C -0.22 -7.50 9.85 66.72 0.66 -6.84 16 21 S 0.09 2.88 23.33 -56.49 -1.32 1.56 16 22 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.11 5.30 7.87 -2.91 -0.02 5.28 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.09 2.65 7.82 -2.39 -0.02 2.63 16 30 H 0.06 2.33 7.01 -2.39 -0.02 2.31 16 31 H 0.07 2.59 7.98 -2.38 -0.02 2.57 16 32 H 0.07 2.48 8.06 -2.39 -0.02 2.46 16 33 H 0.06 3.08 6.18 -2.39 -0.01 3.07 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.18 4.99 7.36 -2.91 -0.02 4.97 16 Total: -1.00 -62.63 312.19 4.55 -58.08 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.04 Total: 16.31 kcal Atomic # 6 Polarization: -55.80 SS G_CDS: 3.90 Total: -51.90 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.24 Total: -50.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.33 Total: -19.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.32 Total: 1.56 kcal Total: -62.63 4.55 -58.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381366995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.834 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds