Wall clock time and date at job start Mon Mar 30 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38419 * 122.54420 * 2 1 4 4 C 1.33391 * 114.92492 * 180.27432 * 3 2 1 5 5 S 1.75879 * 109.59142 * 359.77090 * 4 3 2 6 6 C 1.33390 * 122.53822 * 179.83105 * 2 1 3 7 7 C 1.50699 * 125.20449 * 0.02562 * 6 2 1 8 8 C 1.53002 * 109.47789 * 299.73933 * 7 6 2 9 9 C 1.53089 * 109.48057 * 179.71856 * 7 6 2 10 10 C 1.53184 * 109.16126 * 182.39462 * 9 7 6 11 11 C 1.53176 * 109.11229 * 56.93618 * 10 9 7 12 12 C 1.53105 * 109.15416 * 303.15261 * 11 10 9 13 13 H 1.08998 * 109.48511 * 177.50056 * 12 11 10 14 14 C 1.50700 * 109.41559 * 297.48827 * 12 11 10 15 15 H 1.08004 * 120.00022 * 5.63647 * 14 12 11 16 16 C 1.37883 * 120.00155 * 185.63914 * 14 12 11 17 17 N 1.31512 * 119.99700 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00062 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47193 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46757 * 120.00368 * 18 16 14 21 21 H 1.48497 * 109.47150 * 240.00281 * 18 16 14 22 22 O 1.42902 * 109.48837 * 57.47353 * 12 11 10 23 23 H 1.09002 * 109.46807 * 270.16830 * 1 2 3 24 24 H 1.08999 * 109.46967 * 30.16563 * 1 2 3 25 25 H 1.09002 * 109.47102 * 150.16858 * 1 2 3 26 26 H 1.08005 * 122.53618 * 0.04605 * 3 2 1 27 27 H 1.08006 * 125.20076 * 179.74892 * 4 3 2 28 28 H 1.09010 * 109.46981 * 317.75712 * 8 7 6 29 29 H 1.08992 * 109.47329 * 77.76214 * 8 7 6 30 30 H 1.09006 * 109.47138 * 197.76544 * 8 7 6 31 31 H 1.08997 * 109.52706 * 62.48752 * 9 7 6 32 32 H 1.09001 * 109.52054 * 302.29555 * 9 7 6 33 33 H 1.09006 * 109.54379 * 176.84473 * 10 9 7 34 34 H 1.08999 * 109.54657 * 297.01883 * 10 9 7 35 35 H 1.09002 * 109.52464 * 62.96143 * 11 10 9 36 36 H 1.08995 * 109.52760 * 183.15796 * 11 10 9 37 37 H 0.96998 * 119.99915 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1668 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9386 -0.7305 -0.0051 6 6 2.2244 -1.1245 0.0033 7 6 1.6536 -2.5192 0.0069 8 6 0.7977 -2.7170 1.2596 9 6 2.7960 -3.5384 0.0030 10 6 2.2084 -4.9519 -0.0538 11 6 1.3158 -5.0746 -1.2925 12 6 0.2319 -3.9946 -1.2396 13 1 -0.3795 -4.0486 -2.1404 14 6 -0.6371 -4.2159 -0.0284 15 1 -0.3832 -4.9861 0.6849 16 6 -1.7563 -3.4352 0.1691 17 7 -2.0657 -2.4977 -0.6998 18 14 -2.8338 -3.7100 1.6701 19 1 -2.2730 -4.8168 2.4861 20 1 -2.8758 -2.4681 2.4833 21 1 -4.2088 -4.0632 1.2344 22 8 0.8457 -2.7068 -1.1568 23 1 -0.3633 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3633 -0.8915 -0.5112 26 1 1.7965 2.1463 0.0007 27 1 4.3078 1.7822 -0.0106 28 1 1.3047 -2.2781 2.1190 29 1 -0.1680 -2.2311 1.1202 30 1 0.6468 -3.7827 1.4320 31 1 3.3875 -3.4260 0.9115 32 1 3.4295 -3.3720 -0.8682 33 1 3.0169 -5.6807 -0.1134 34 1 1.6161 -5.1370 0.8423 35 1 1.9185 -4.9401 -2.1907 36 1 0.8497 -6.0598 -1.3096 37 1 -2.8533 -1.9487 -0.5610 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381614317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:10 Heat of formation + Delta-G solvation = -8.929564 kcal Electronic energy + Delta-G solvation = -19724.705189 eV Core-core repulsion = 16979.959982 eV Total energy + Delta-G solvation = -2744.745207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.28520 -37.30615 -32.91817 -32.45772 -31.89883 -29.43765 -27.70215 -26.57434 -24.48739 -22.91515 -22.30221 -21.04504 -18.54344 -17.66867 -17.00708 -16.11226 -14.96324 -14.86318 -14.25071 -14.12437 -13.70327 -13.31719 -13.03885 -12.74619 -12.32405 -12.06100 -11.76071 -11.55171 -11.38844 -11.23921 -11.19689 -10.90818 -10.74148 -10.64028 -10.45214 -10.30537 -10.06858 -9.97664 -9.67891 -9.43624 -8.74902 -8.29775 -8.09501 -7.82057 -7.70819 -6.06228 -4.06795 1.52704 2.13909 2.51873 3.22060 3.29254 3.33091 3.35182 4.34778 5.00828 5.29697 5.39839 5.53093 5.67013 5.79335 5.89614 6.06281 6.10271 6.17060 6.26208 6.38174 6.44852 6.53539 6.57013 6.64377 6.66808 6.79452 6.84416 6.92093 6.99557 7.03610 7.16117 7.33760 7.59996 7.63675 7.83853 7.87734 8.16438 8.76698 9.01215 9.50500 10.98034 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021560 B = 0.009378 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.398179 B = 2984.917812 C = 3742.153823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.234 4.234 5 S 0.068 5.932 6 C -0.142 4.142 7 C 0.207 3.793 8 C -0.155 4.155 9 C -0.142 4.142 10 C -0.109 4.109 11 C -0.143 4.143 12 C 0.209 3.791 13 H 0.068 0.932 14 C -0.543 4.543 15 H 0.060 0.940 16 C 0.080 3.920 17 N -0.858 5.858 18 Si 0.871 3.129 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.283 1.283 22 O -0.361 6.361 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.134 0.866 26 H 0.132 0.868 27 H 0.155 0.845 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 2.880 1.925 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.103 4.103 3 C -0.156 4.156 4 C -0.369 4.369 5 S 0.333 5.667 6 C -0.259 4.259 7 C 0.165 3.835 8 C -0.213 4.213 9 C -0.180 4.180 10 C -0.146 4.146 11 C -0.181 4.181 12 C 0.153 3.847 13 H 0.086 0.914 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.125 4.125 17 N -0.495 5.495 18 Si 0.698 3.302 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.209 1.209 22 O -0.281 6.281 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.153 0.847 26 H 0.149 0.851 27 H 0.173 0.827 28 H 0.028 0.972 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.289 2.339 1.720 9.732 hybrid contribution -1.737 0.763 1.057 2.172 sum 7.552 3.102 2.777 8.624 Atomic orbital electron populations 1.20972 0.88751 1.05841 1.01745 1.18967 0.98394 0.90928 1.02036 1.20119 0.92903 0.99249 1.03354 1.25418 0.99528 0.98999 1.12994 1.83903 1.07742 1.00203 1.74807 1.24450 0.93765 0.99138 1.08535 1.19106 0.89507 0.85297 0.89638 1.22999 1.00472 1.04351 0.93463 1.22184 0.98084 0.96956 1.00813 1.21489 0.98130 0.94840 1.00176 1.22192 0.98671 1.01094 0.96110 1.19792 0.88262 0.78699 0.97947 0.91401 1.21479 1.09307 1.18613 1.08677 0.92165 1.24891 0.96690 0.94904 0.96001 1.69962 1.25506 1.19604 1.34460 0.86884 0.80946 0.78464 0.83861 1.19593 1.20689 1.20897 1.87986 1.63717 1.36791 1.39577 0.92978 0.93586 0.84740 0.85061 0.82715 0.97247 0.89565 0.89133 0.92468 0.92408 0.93892 0.90879 0.94030 0.92327 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.51 36.00 0.31 -2.08 16 2 C -0.09 -1.84 5.72 -106.25 -0.61 -2.45 16 3 C -0.12 -2.10 9.98 -41.21 -0.41 -2.52 16 4 C -0.23 -3.60 11.23 29.04 0.33 -3.28 16 5 S 0.07 1.14 21.84 -107.50 -2.35 -1.21 16 6 C -0.14 -2.87 5.30 -36.00 -0.19 -3.06 16 7 C 0.21 4.42 0.66 -91.73 -0.06 4.36 16 8 C -0.16 -3.42 6.45 37.16 0.24 -3.18 16 9 C -0.14 -2.70 4.01 -26.59 -0.11 -2.80 16 10 C -0.11 -2.03 5.62 -26.55 -0.15 -2.18 16 11 C -0.14 -2.88 5.60 -26.59 -0.15 -3.03 16 12 C 0.21 4.97 3.07 -27.83 -0.09 4.89 16 13 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 14 C -0.54 -13.35 4.70 -34.44 -0.16 -13.51 16 15 H 0.06 1.48 6.04 -52.48 -0.32 1.16 16 16 C 0.08 2.01 3.41 -17.82 -0.06 1.94 16 17 N -0.86 -22.48 11.41 55.43 0.63 -21.85 16 18 Si 0.87 19.85 29.25 -169.99 -4.97 14.88 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 O -0.36 -8.76 8.26 -35.23 -0.29 -9.05 16 23 H 0.05 1.06 7.95 -51.93 -0.41 0.65 16 24 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.13 3.22 3.93 -51.93 -0.20 3.02 16 26 H 0.13 1.90 8.06 -52.48 -0.42 1.47 16 27 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 28 H 0.01 0.18 8.01 -51.92 -0.42 -0.23 16 29 H 0.09 2.07 3.69 -51.93 -0.19 1.87 16 30 H 0.09 2.02 3.50 -51.93 -0.18 1.84 16 31 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.06 1.08 7.86 -51.93 -0.41 0.68 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.42 5.33 -51.93 -0.28 1.14 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 285.82 15.07 4.31 4.31 Total: -1.00 -25.95 285.82 -8.70 -34.65 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.92 Total: 5.17 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: -1.11 Total: -26.90 kcal Atomic # 7 Polarization: -22.48 SS G_CDS: 0.63 Total: -21.85 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.29 Total: -9.05 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.97 Total: 14.88 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.35 Total: -1.21 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.95 -8.70 -34.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381614317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.724 kcal (2) G-P(sol) polarization free energy of solvation -25.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds