Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 122.54070 * 2 1 4 4 C 1.33391 * 114.92206 * 180.27100 * 3 2 1 5 5 S 1.75880 * 109.59101 * 359.77161 * 4 3 2 6 6 C 1.33387 * 122.53962 * 179.82599 * 2 1 3 7 7 C 1.50700 * 125.20280 * 0.02562 * 6 2 1 8 8 C 1.53003 * 109.47878 * 68.30859 * 7 6 2 9 9 C 1.53100 * 109.47970 * 188.32923 * 7 6 2 10 10 C 1.53175 * 109.16189 * 177.60569 * 9 7 6 11 11 C 1.53172 * 109.03429 * 303.01440 * 10 9 7 12 12 C 1.53099 * 109.16353 * 56.98699 * 11 10 9 13 13 H 1.08996 * 109.48376 * 182.40414 * 12 11 10 14 14 C 1.50701 * 109.47907 * 62.36783 * 12 11 10 15 15 H 1.07995 * 120.00110 * 354.53231 * 14 12 11 16 16 C 1.37877 * 119.99669 * 174.52872 * 14 12 11 17 17 N 1.31520 * 120.00105 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00159 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47046 * 59.99583 * 18 16 14 20 20 H 1.48499 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47156 * 300.00087 * 18 16 14 22 22 O 1.42891 * 109.49268 * 308.27415 * 7 6 2 23 23 H 1.09000 * 109.47237 * 264.55683 * 1 2 3 24 24 H 1.08995 * 109.46994 * 24.55925 * 1 2 3 25 25 H 1.09003 * 109.46701 * 144.56043 * 1 2 3 26 26 H 1.08001 * 122.53764 * 0.03981 * 3 2 1 27 27 H 1.07993 * 125.19733 * 179.78914 * 4 3 2 28 28 H 1.09001 * 109.46674 * 161.32991 * 8 7 6 29 29 H 1.08998 * 109.46877 * 281.32696 * 8 7 6 30 30 H 1.08996 * 109.47202 * 41.33038 * 8 7 6 31 31 H 1.08994 * 109.52131 * 57.69193 * 9 7 6 32 32 H 1.09006 * 109.57108 * 297.53940 * 9 7 6 33 33 H 1.08998 * 109.54165 * 183.14930 * 10 9 7 34 34 H 1.08994 * 109.61867 * 62.93002 * 10 9 7 35 35 H 1.08993 * 109.52963 * 297.07932 * 11 10 9 36 36 H 1.09002 * 109.52388 * 176.88770 * 11 10 9 37 37 H 0.96997 * 119.99977 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0049 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5192 0.0071 8 6 0.9675 -2.7932 -1.3327 9 6 2.7819 -3.5320 0.2194 10 6 2.1867 -4.9420 0.2818 11 6 1.1410 -4.9938 1.3999 12 6 0.0761 -3.9246 1.1420 13 1 -0.6476 -3.9282 1.9570 14 6 -0.6283 -4.2199 -0.1572 15 1 -0.2876 -5.0307 -0.7839 16 6 -1.7077 -3.4549 -0.5455 17 7 -2.1228 -2.4679 0.2181 18 14 -2.5813 -3.8213 -2.1554 19 1 -3.1157 -5.2065 -2.1244 20 1 -3.7007 -2.8633 -2.3403 21 1 -1.6222 -3.6860 -3.2810 22 8 0.7004 -2.6415 1.0646 23 1 -0.3634 -0.0975 1.0230 24 1 -0.3633 0.9347 -0.4271 25 1 -0.3633 -0.8373 -0.5959 26 1 1.7965 2.1464 0.0006 27 1 4.3077 1.7823 -0.0099 28 1 0.8508 -3.8685 -1.4679 29 1 -0.0130 -2.3172 -1.3428 30 1 1.5759 -2.3892 -2.1418 31 1 3.2973 -3.3124 1.1544 32 1 3.4880 -3.4710 -0.6088 33 1 2.9777 -5.6629 0.4886 34 1 1.7144 -5.1823 -0.6706 35 1 1.6232 -4.8038 2.3587 36 1 0.6727 -5.9780 1.4153 37 1 -2.8820 -1.9295 -0.0552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381614318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = -7.156853 kcal Electronic energy + Delta-G solvation = -19725.472128 eV Core-core repulsion = 16980.803791 eV Total energy + Delta-G solvation = -2744.668337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.25808 -37.29530 -32.89981 -32.43389 -31.88380 -29.43590 -27.70211 -26.54385 -24.48233 -22.90818 -22.29569 -21.01788 -18.53459 -17.69849 -16.95610 -16.09025 -14.95407 -14.86765 -14.21809 -14.10323 -13.72288 -13.33951 -12.94911 -12.72140 -12.32424 -12.08352 -11.73108 -11.57613 -11.36039 -11.21544 -11.13976 -11.01563 -10.71288 -10.70289 -10.36999 -10.31116 -10.01763 -9.95861 -9.68753 -9.39561 -8.72708 -8.29230 -8.10194 -7.81613 -7.66294 -6.03616 -4.04741 1.53943 2.13642 2.51851 3.25598 3.30997 3.31726 3.35237 4.35873 5.03908 5.30328 5.40359 5.53355 5.67839 5.81067 5.90179 6.08234 6.09518 6.16910 6.26743 6.35575 6.45093 6.56837 6.60140 6.64581 6.77619 6.83146 6.85638 6.93171 7.00116 7.04390 7.19294 7.33979 7.43743 7.65509 7.83781 7.91519 8.18381 8.78581 9.03526 9.52140 11.00000 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.009322 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.006514 B = 3002.873349 C = 3715.299095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.235 4.235 5 S 0.067 5.933 6 C -0.143 4.143 7 C 0.207 3.793 8 C -0.153 4.153 9 C -0.142 4.142 10 C -0.109 4.109 11 C -0.143 4.143 12 C 0.210 3.790 13 H 0.067 0.933 14 C -0.546 4.546 15 H 0.058 0.942 16 C 0.080 3.920 17 N -0.854 5.854 18 Si 0.869 3.131 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.359 6.359 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.097 0.903 26 H 0.132 0.868 27 H 0.155 0.845 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.008 0.992 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.232 3.012 -0.996 8.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.156 4.156 4 C -0.370 4.370 5 S 0.331 5.669 6 C -0.260 4.260 7 C 0.165 3.835 8 C -0.210 4.210 9 C -0.180 4.180 10 C -0.146 4.146 11 C -0.181 4.181 12 C 0.155 3.845 13 H 0.085 0.915 14 C -0.583 4.583 15 H 0.076 0.924 16 C -0.125 4.125 17 N -0.491 5.491 18 Si 0.697 3.303 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.278 6.278 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.115 0.885 26 H 0.150 0.850 27 H 0.173 0.827 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.429 2.491 -0.835 9.788 hybrid contribution -1.596 0.602 -1.041 1.998 sum 7.833 3.093 -1.876 8.628 Atomic orbital electron populations 1.20622 0.88164 1.01727 1.04090 1.19016 0.98586 0.90886 1.02009 1.20119 0.92882 0.99224 1.03331 1.25406 0.99535 0.98936 1.13092 1.83899 1.07682 1.00275 1.74997 1.24422 0.93734 0.99218 1.08638 1.19091 0.88270 0.85332 0.90834 1.22951 1.00817 1.04209 0.93041 1.22184 0.98019 0.96990 1.00791 1.21485 0.97508 0.94939 1.00688 1.22196 0.98178 1.01152 0.96571 1.19757 0.88539 0.78940 0.97300 0.91499 1.21389 1.14300 1.16374 1.06274 0.92368 1.24890 0.96268 0.94854 0.96513 1.70021 1.24842 1.17855 1.36340 0.87042 0.79775 0.78393 0.85140 1.20211 1.21142 1.19812 1.88010 1.54689 1.36164 1.48968 0.90624 0.94414 0.88503 0.85048 0.82730 0.89292 0.89550 0.97272 0.92406 0.92585 0.93934 0.90897 0.94059 0.92405 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 8.99 36.01 0.32 -1.48 16 2 C -0.09 -1.86 5.74 -106.25 -0.61 -2.47 16 3 C -0.12 -2.07 9.96 -41.21 -0.41 -2.48 16 4 C -0.23 -3.58 11.23 29.04 0.33 -3.26 16 5 S 0.07 1.11 21.90 -107.50 -2.35 -1.25 16 6 C -0.14 -2.88 5.24 -36.00 -0.19 -3.07 16 7 C 0.21 4.42 0.67 -91.72 -0.06 4.36 16 8 C -0.15 -3.38 6.61 37.16 0.25 -3.13 16 9 C -0.14 -2.69 4.01 -26.59 -0.11 -2.80 16 10 C -0.11 -2.03 5.62 -26.55 -0.15 -2.18 16 11 C -0.14 -2.90 5.60 -26.59 -0.15 -3.05 16 12 C 0.21 5.02 3.07 -27.83 -0.09 4.93 16 13 H 0.07 1.75 8.14 -51.93 -0.42 1.32 16 14 C -0.55 -13.43 4.71 -34.44 -0.16 -13.59 16 15 H 0.06 1.43 6.05 -52.49 -0.32 1.11 16 16 C 0.08 2.01 3.39 -17.82 -0.06 1.95 16 17 N -0.85 -22.31 12.16 55.43 0.67 -21.63 16 18 Si 0.87 19.81 29.24 -169.99 -4.97 14.84 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 O -0.36 -8.66 8.80 -35.23 -0.31 -8.97 16 23 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 24 H 0.04 0.68 8.11 -51.93 -0.42 0.26 16 25 H 0.10 2.24 4.18 -51.93 -0.22 2.02 16 26 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 27 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.99 3.56 -51.93 -0.18 1.81 16 29 H 0.09 2.08 3.15 -51.93 -0.16 1.92 16 30 H 0.01 0.18 8.00 -51.93 -0.42 -0.24 16 31 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 32 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.42 5.31 -51.93 -0.28 1.14 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -25.81 287.70 -8.63 -34.44 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.92 Total: 4.53 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -1.09 Total: -26.29 kcal Atomic # 7 Polarization: -22.31 SS G_CDS: 0.67 Total: -21.63 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.31 Total: -8.97 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.97 Total: 14.84 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.35 Total: -1.25 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.81 -8.63 -34.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381614318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.281 kcal (2) G-P(sol) polarization free energy of solvation -25.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds