Wall clock time and date at job start Mon Mar 30 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38428 * 122.54070 * 2 1 4 4 C 1.33391 * 114.92206 * 180.27100 * 3 2 1 5 5 S 1.75880 * 109.59101 * 359.77161 * 4 3 2 6 6 C 1.33387 * 122.53962 * 179.82599 * 2 1 3 7 7 C 1.50700 * 125.20280 * 0.02562 * 6 2 1 8 8 C 1.53003 * 109.47878 * 68.30859 * 7 6 2 9 9 C 1.53100 * 109.47970 * 188.32923 * 7 6 2 10 10 C 1.53175 * 109.16189 * 177.60569 * 9 7 6 11 11 C 1.53172 * 109.03429 * 303.01440 * 10 9 7 12 12 C 1.53099 * 109.16353 * 56.98699 * 11 10 9 13 13 H 1.08996 * 109.48376 * 182.40414 * 12 11 10 14 14 C 1.50701 * 109.47907 * 62.36783 * 12 11 10 15 15 H 1.07995 * 120.00110 * 354.53231 * 14 12 11 16 16 C 1.37877 * 119.99669 * 174.52872 * 14 12 11 17 17 N 1.31520 * 120.00105 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00159 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47046 * 59.99583 * 18 16 14 20 20 H 1.48499 * 109.47367 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47156 * 300.00087 * 18 16 14 22 22 O 1.42891 * 109.49268 * 308.27415 * 7 6 2 23 23 H 1.09000 * 109.47237 * 264.55683 * 1 2 3 24 24 H 1.08995 * 109.46994 * 24.55925 * 1 2 3 25 25 H 1.09003 * 109.46701 * 144.56043 * 1 2 3 26 26 H 1.08001 * 122.53764 * 0.03981 * 3 2 1 27 27 H 1.07993 * 125.19733 * 179.78914 * 4 3 2 28 28 H 1.09001 * 109.46674 * 161.32991 * 8 7 6 29 29 H 1.08998 * 109.46877 * 281.32696 * 8 7 6 30 30 H 1.08996 * 109.47202 * 41.33038 * 8 7 6 31 31 H 1.08994 * 109.52131 * 57.69193 * 9 7 6 32 32 H 1.09006 * 109.57108 * 297.53940 * 9 7 6 33 33 H 1.08998 * 109.54165 * 183.14930 * 10 9 7 34 34 H 1.08994 * 109.61867 * 62.93002 * 10 9 7 35 35 H 1.08993 * 109.52963 * 297.07932 * 11 10 9 36 36 H 1.09002 * 109.52388 * 176.88770 * 11 10 9 37 37 H 0.96997 * 119.99977 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7304 -0.0049 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5192 0.0071 8 6 0.9675 -2.7932 -1.3327 9 6 2.7819 -3.5320 0.2194 10 6 2.1867 -4.9420 0.2818 11 6 1.1410 -4.9938 1.3999 12 6 0.0761 -3.9246 1.1420 13 1 -0.6476 -3.9282 1.9570 14 6 -0.6283 -4.2199 -0.1572 15 1 -0.2876 -5.0307 -0.7839 16 6 -1.7077 -3.4549 -0.5455 17 7 -2.1228 -2.4679 0.2181 18 14 -2.5813 -3.8213 -2.1554 19 1 -3.1157 -5.2065 -2.1244 20 1 -3.7007 -2.8633 -2.3403 21 1 -1.6222 -3.6860 -3.2810 22 8 0.7004 -2.6415 1.0646 23 1 -0.3634 -0.0975 1.0230 24 1 -0.3633 0.9347 -0.4271 25 1 -0.3633 -0.8373 -0.5959 26 1 1.7965 2.1464 0.0006 27 1 4.3077 1.7823 -0.0099 28 1 0.8508 -3.8685 -1.4679 29 1 -0.0130 -2.3172 -1.3428 30 1 1.5759 -2.3892 -2.1418 31 1 3.2973 -3.3124 1.1544 32 1 3.4880 -3.4710 -0.6088 33 1 2.9777 -5.6629 0.4886 34 1 1.7144 -5.1823 -0.6706 35 1 1.6232 -4.8038 2.3587 36 1 0.6727 -5.9780 1.4153 37 1 -2.8820 -1.9295 -0.0552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381614318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:12 Heat of formation + Delta-G solvation = -19.850914 kcal Electronic energy + Delta-G solvation = -19726.022584 eV Core-core repulsion = 16980.803791 eV Total energy + Delta-G solvation = -2745.218792 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90209 -38.73389 -34.73093 -34.09216 -33.55652 -30.95615 -29.51385 -28.08830 -26.24654 -24.52285 -23.75544 -22.61402 -20.24154 -19.17489 -18.47154 -17.80396 -16.71706 -16.39230 -15.88272 -15.60623 -15.43119 -14.95211 -14.56603 -14.31250 -13.83527 -13.75234 -13.49147 -13.11512 -13.01019 -12.76011 -12.68952 -12.65388 -12.47213 -12.43598 -12.06691 -11.78341 -11.70332 -11.55725 -11.28971 -11.12047 -10.52946 -10.22938 -9.62833 -9.35478 -9.07674 -7.98011 -6.02285 0.18959 0.80529 1.18808 1.41725 1.45506 1.48482 1.91371 2.45916 3.20003 3.68722 3.94280 4.12830 4.22065 4.24743 4.47892 4.51427 4.65327 4.68659 4.75929 4.82035 4.92398 4.95038 5.00991 5.10917 5.17433 5.26371 5.29595 5.32414 5.40540 5.41061 5.57088 5.73958 5.77031 5.86114 5.91114 6.15012 6.28192 6.86642 7.23698 7.57297 9.05347 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021451 B = 0.009322 C = 0.007535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.006514 B = 3002.873349 C = 3715.299095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.107 4.107 3 C -0.142 4.142 4 C -0.212 4.212 5 S 0.103 5.897 6 C -0.185 4.185 7 C 0.202 3.798 8 C -0.146 4.146 9 C -0.137 4.137 10 C -0.105 4.105 11 C -0.137 4.137 12 C 0.207 3.793 13 H 0.029 0.971 14 C -0.543 4.543 15 H 0.059 0.941 16 C 0.047 3.953 17 N -0.879 5.879 18 Si 0.914 3.086 19 H -0.274 1.274 20 H -0.290 1.290 21 H -0.269 1.269 22 O -0.381 6.381 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.195 0.805 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.063 0.937 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 3.507 -1.739 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C -0.173 4.173 4 C -0.347 4.347 5 S 0.368 5.632 6 C -0.302 4.302 7 C 0.160 3.840 8 C -0.204 4.204 9 C -0.175 4.175 10 C -0.142 4.142 11 C -0.175 4.175 12 C 0.151 3.849 13 H 0.047 0.953 14 C -0.581 4.581 15 H 0.077 0.923 16 C -0.155 4.155 17 N -0.516 5.516 18 Si 0.741 3.259 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.194 1.194 22 O -0.301 6.301 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.172 0.828 27 H 0.212 0.788 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.866 2.970 -1.584 12.334 hybrid contribution -2.301 0.509 -0.787 2.485 sum 9.565 3.479 -2.371 10.451 Atomic orbital electron populations 1.20420 0.89762 1.01631 1.01912 1.19179 0.97934 0.92398 1.02377 1.20244 0.93403 0.99146 1.04468 1.25909 0.99719 0.99185 1.09919 1.83681 1.04232 1.01116 1.74213 1.24474 0.96471 0.98607 1.10605 1.19192 0.88300 0.87219 0.89256 1.22815 0.99970 1.03388 0.94232 1.22137 0.97426 0.96335 1.01566 1.21468 0.97737 0.95660 0.99380 1.22087 0.97748 0.99988 0.97705 1.19621 0.89287 0.80284 0.95715 0.95275 1.21516 1.14144 1.15972 1.06451 0.92291 1.25357 0.96928 0.94788 0.98465 1.70132 1.25181 1.18720 1.37583 0.86325 0.78828 0.77991 0.82787 1.19986 1.21545 1.19384 1.87945 1.55747 1.36176 1.50214 0.93403 0.92491 0.91021 0.82774 0.78751 0.89988 0.91854 0.96438 0.92133 0.90830 0.90760 0.91768 0.93406 0.91798 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.33 8.99 71.24 0.64 -2.69 16 2 C -0.11 -4.16 5.74 -20.92 -0.12 -4.28 16 3 C -0.14 -4.38 9.96 21.22 0.21 -4.17 16 4 C -0.21 -5.63 11.23 66.72 0.75 -4.88 16 5 S 0.10 3.09 21.90 -56.49 -1.24 1.86 16 6 C -0.18 -7.24 5.24 24.59 0.13 -7.11 16 7 C 0.20 8.55 0.67 -11.51 -0.01 8.54 16 8 C -0.15 -6.49 6.61 71.98 0.48 -6.02 16 9 C -0.14 -4.94 4.01 30.69 0.12 -4.82 16 10 C -0.11 -3.73 5.62 30.71 0.17 -3.56 16 11 C -0.14 -5.50 5.60 30.68 0.17 -5.33 16 12 C 0.21 10.13 3.07 29.88 0.09 10.22 16 13 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 14 C -0.54 -27.24 4.71 25.60 0.12 -27.12 16 15 H 0.06 2.90 6.05 -2.91 -0.02 2.89 16 16 C 0.05 2.44 3.39 84.65 0.29 2.73 16 17 N -0.88 -47.76 12.16 21.45 0.26 -47.49 16 18 Si 0.91 41.27 29.24 68.60 2.01 43.28 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 O -0.38 -18.83 8.80 -148.98 -1.31 -20.14 16 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 25 H 0.07 3.43 4.18 -2.39 -0.01 3.42 16 26 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 27 H 0.20 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.08 3.67 3.56 -2.39 -0.01 3.66 16 29 H 0.06 3.12 3.15 -2.39 -0.01 3.11 16 30 H 0.02 0.70 8.00 -2.39 -0.02 0.68 16 31 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 32 H 0.07 2.39 7.90 -2.38 -0.02 2.37 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.40 5.31 -2.39 -0.01 2.38 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -56.70 287.70 3.84 -52.86 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 1.07 Total: 18.10 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 3.04 Total: -48.46 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.26 Total: -47.49 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -1.31 Total: -20.14 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.01 Total: 43.28 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.24 Total: 1.86 kcal Total: -56.70 3.84 -52.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381614318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.014 kcal (2) G-P(sol) polarization free energy of solvation -56.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds