Wall clock time and date at job start Mon Mar 30 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38430 * 122.53842 * 2 1 4 4 C 1.33385 * 114.92060 * 180.27485 * 3 2 1 5 5 S 1.75884 * 109.59205 * 359.76703 * 4 3 2 6 6 C 1.33388 * 122.54071 * 179.82925 * 2 1 3 7 7 C 1.50700 * 125.20158 * 0.02562 * 6 2 1 8 8 C 1.53003 * 109.47847 * 175.51002 * 7 6 2 9 9 C 1.53090 * 109.47889 * 295.53228 * 7 6 2 10 10 C 1.53182 * 109.16251 * 177.59326 * 9 7 6 11 11 C 1.53185 * 109.10755 * 302.97588 * 10 9 7 12 12 C 1.53281 * 109.06204 * 56.94250 * 11 10 9 13 13 H 1.09002 * 109.46852 * 62.44260 * 12 11 10 14 14 C 1.50696 * 109.45731 * 182.44733 * 12 11 10 15 15 H 1.08000 * 119.99990 * 359.97438 * 14 12 11 16 16 C 1.37874 * 120.00108 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00263 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 120.00075 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47104 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47242 * 120.00025 * 18 16 14 21 21 H 1.48499 * 109.47166 * 240.00102 * 18 16 14 22 22 O 1.42902 * 109.48067 * 55.47904 * 7 6 2 23 23 H 1.09000 * 109.46615 * 270.68272 * 1 2 3 24 24 H 1.08998 * 109.46966 * 30.68167 * 1 2 3 25 25 H 1.08997 * 109.46761 * 150.68459 * 1 2 3 26 26 H 1.07999 * 122.53966 * 0.04253 * 3 2 1 27 27 H 1.07997 * 125.20744 * 179.74819 * 4 3 2 28 28 H 1.09002 * 109.46683 * 175.95106 * 8 7 6 29 29 H 1.08991 * 109.47306 * 295.95852 * 8 7 6 30 30 H 1.09000 * 109.46785 * 55.95909 * 8 7 6 31 31 H 1.09004 * 109.52511 * 57.68804 * 9 7 6 32 32 H 1.08998 * 109.52694 * 297.49696 * 9 7 6 33 33 H 1.08997 * 109.53967 * 62.88460 * 10 9 7 34 34 H 1.09002 * 109.54564 * 183.06884 * 10 9 7 35 35 H 1.08994 * 109.52196 * 176.92951 * 11 10 9 36 36 H 1.08993 * 109.52261 * 297.11739 * 11 10 9 37 37 H 0.96993 * 120.00425 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0058 5 16 3.9386 -0.7304 -0.0050 6 6 2.2246 -1.1245 0.0034 7 6 1.6538 -2.5192 0.0070 8 6 2.7914 -3.5364 -0.1028 9 6 0.8842 -2.7524 1.3096 10 6 0.2569 -4.1496 1.2798 11 6 -0.6428 -4.2691 0.0458 12 6 0.1871 -3.9759 -1.2091 13 1 0.9783 -4.7197 -1.3034 14 6 -0.7028 -4.0319 -2.4239 15 1 -1.7539 -4.2545 -2.3136 16 6 -0.1753 -3.7991 -3.6763 17 7 1.1044 -3.5276 -3.8108 18 14 -1.2784 -3.8693 -5.1823 19 1 -2.6667 -4.1907 -4.7644 20 1 -1.2612 -2.5535 -5.8703 21 1 -0.7844 -4.9191 -6.1092 22 8 0.7671 -2.6741 -1.1030 23 1 -0.3632 0.0122 1.0276 24 1 -0.3633 0.8838 -0.5244 25 1 -0.3633 -0.8960 -0.5032 26 1 1.7965 2.1464 0.0007 27 1 4.3078 1.7823 -0.0106 28 1 2.3853 -4.5451 -0.0278 29 1 3.2940 -3.4172 -1.0625 30 1 3.5054 -3.3713 0.7042 31 1 0.0991 -2.0027 1.4082 32 1 1.5681 -2.6783 2.1551 33 1 1.0443 -4.9018 1.2312 34 1 -0.3377 -4.3017 2.1806 35 1 -1.0499 -5.2785 -0.0119 36 1 -1.4586 -3.5500 0.1188 37 1 1.4756 -3.3642 -4.6918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381614319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:15 Heat of formation + Delta-G solvation = -25.250208 kcal Electronic energy + Delta-G solvation = -19219.792293 eV Core-core repulsion = 16474.339370 eV Total energy + Delta-G solvation = -2745.452923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.24395 -37.26041 -33.26556 -32.47685 -31.51565 -29.90537 -27.80494 -26.46710 -25.19552 -22.92968 -22.03742 -21.19716 -18.47473 -17.91561 -16.91214 -16.31388 -15.16121 -14.82089 -14.47596 -14.20994 -13.89105 -13.48552 -13.22168 -12.59858 -12.43957 -12.24267 -11.90028 -11.68210 -11.54907 -11.38103 -11.34747 -11.12487 -10.93737 -10.79202 -10.57385 -10.34173 -10.23508 -10.15239 -9.77928 -9.59708 -8.86275 -8.51827 -8.14345 -7.83092 -7.77145 -6.00296 -4.12090 1.45883 2.08993 2.47671 3.17407 3.30414 3.38728 3.41679 4.42336 4.94951 5.26129 5.33047 5.44416 5.51790 5.64767 5.71683 5.89475 5.92152 5.95241 6.02184 6.11000 6.17978 6.26341 6.29972 6.40683 6.49106 6.56029 6.58939 6.66178 6.83030 6.86878 6.88277 6.97882 7.10654 7.17733 7.54490 7.90644 8.29501 8.78602 9.13251 9.57690 11.06571 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.007740 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.030772 B = 3616.670024 C = 4106.709111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.234 4.234 5 S 0.089 5.911 6 C -0.136 4.136 7 C 0.181 3.819 8 C -0.175 4.175 9 C -0.134 4.134 10 C -0.121 4.121 11 C -0.145 4.145 12 C 0.217 3.783 13 H 0.020 0.980 14 C -0.526 4.526 15 H 0.064 0.936 16 C 0.080 3.920 17 N -0.854 5.854 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 O -0.334 6.334 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.132 0.868 27 H 0.156 0.844 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 4.973 9.429 11.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.369 4.369 5 S 0.354 5.646 6 C -0.253 4.253 7 C 0.138 3.862 8 C -0.233 4.233 9 C -0.173 4.173 10 C -0.159 4.159 11 C -0.183 4.183 12 C 0.161 3.839 13 H 0.037 0.963 14 C -0.563 4.563 15 H 0.082 0.918 16 C -0.127 4.127 17 N -0.490 5.490 18 Si 0.716 3.284 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 O -0.254 6.254 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.150 0.850 27 H 0.174 0.826 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.734 4.335 9.165 11.189 hybrid contribution -1.586 0.828 -0.737 1.935 sum 3.149 5.163 8.428 10.373 Atomic orbital electron populations 1.20673 0.89798 1.04303 1.01084 1.18789 0.97743 0.91188 1.03331 1.20028 0.92919 0.99053 1.03708 1.25465 0.99598 0.99305 1.12574 1.84012 1.06982 0.99776 1.73790 1.24261 0.94456 0.98538 1.08066 1.19368 0.90380 0.87157 0.89262 1.22422 0.98285 1.00609 1.01965 1.22169 0.99867 0.98051 0.97193 1.21678 0.99196 0.96391 0.98616 1.22311 0.98994 1.00891 0.96109 1.19811 0.91073 0.82142 0.90856 0.96293 1.21028 0.95368 1.49956 0.89941 0.91794 1.25050 0.94835 0.93812 0.98990 1.70039 1.11591 1.44325 1.23059 0.86615 0.81081 0.77674 0.83070 1.19635 1.20891 1.20974 1.88453 1.58871 1.35002 1.43068 0.92559 0.92617 0.88396 0.85032 0.82618 0.91262 0.91147 0.93454 0.91141 0.92640 0.92371 0.93073 0.92471 0.92508 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 8.50 36.01 0.31 -1.43 16 2 C -0.10 -1.81 5.73 -106.24 -0.61 -2.42 16 3 C -0.13 -1.99 9.98 -41.21 -0.41 -2.40 16 4 C -0.23 -3.50 11.23 29.04 0.33 -3.17 16 5 S 0.09 1.47 21.80 -107.50 -2.34 -0.87 16 6 C -0.14 -2.62 5.35 -36.00 -0.19 -2.82 16 7 C 0.18 3.67 0.67 -91.72 -0.06 3.60 16 8 C -0.18 -3.41 7.06 37.16 0.26 -3.15 16 9 C -0.13 -2.37 4.78 -26.59 -0.13 -2.49 16 10 C -0.12 -2.10 5.71 -26.54 -0.15 -2.25 16 11 C -0.15 -2.98 5.38 -26.49 -0.14 -3.12 16 12 C 0.22 5.38 2.18 -27.74 -0.06 5.32 16 13 H 0.02 0.52 6.44 -51.93 -0.33 0.18 16 14 C -0.53 -14.42 8.79 -34.44 -0.30 -14.72 16 15 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 16 C 0.08 2.22 5.40 -17.82 -0.10 2.12 16 17 N -0.85 -24.85 12.84 55.43 0.71 -24.13 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 O -0.33 -8.25 7.33 -35.23 -0.26 -8.51 16 23 H 0.06 0.85 7.61 -51.93 -0.39 0.46 16 24 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 25 H 0.10 2.02 5.81 -51.93 -0.30 1.72 16 26 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.07 1.35 5.00 -51.93 -0.26 1.09 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.05 0.79 7.67 -51.93 -0.40 0.39 16 31 H 0.07 1.23 5.92 -51.93 -0.31 0.93 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.98 6.53 -51.93 -0.34 0.64 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -29.34 299.57 -8.92 -38.25 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.26 Total: 1.47 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -1.26 Total: -26.93 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.71 Total: -24.13 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.26 Total: -8.51 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.34 Total: -0.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.34 -8.92 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381614319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.002 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds