Wall clock time and date at job start Mon Mar 30 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38430 * 122.53842 * 2 1 4 4 C 1.33385 * 114.92060 * 180.27485 * 3 2 1 5 5 S 1.75884 * 109.59205 * 359.76703 * 4 3 2 6 6 C 1.33388 * 122.54071 * 179.82925 * 2 1 3 7 7 C 1.50700 * 125.20158 * 0.02562 * 6 2 1 8 8 C 1.53003 * 109.47847 * 175.51002 * 7 6 2 9 9 C 1.53090 * 109.47889 * 295.53228 * 7 6 2 10 10 C 1.53182 * 109.16251 * 177.59326 * 9 7 6 11 11 C 1.53185 * 109.10755 * 302.97588 * 10 9 7 12 12 C 1.53281 * 109.06204 * 56.94250 * 11 10 9 13 13 H 1.09002 * 109.46852 * 62.44260 * 12 11 10 14 14 C 1.50696 * 109.45731 * 182.44733 * 12 11 10 15 15 H 1.08000 * 119.99990 * 359.97438 * 14 12 11 16 16 C 1.37874 * 120.00108 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00263 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 120.00075 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47104 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47242 * 120.00025 * 18 16 14 21 21 H 1.48499 * 109.47166 * 240.00102 * 18 16 14 22 22 O 1.42902 * 109.48067 * 55.47904 * 7 6 2 23 23 H 1.09000 * 109.46615 * 270.68272 * 1 2 3 24 24 H 1.08998 * 109.46966 * 30.68167 * 1 2 3 25 25 H 1.08997 * 109.46761 * 150.68459 * 1 2 3 26 26 H 1.07999 * 122.53966 * 0.04253 * 3 2 1 27 27 H 1.07997 * 125.20744 * 179.74819 * 4 3 2 28 28 H 1.09002 * 109.46683 * 175.95106 * 8 7 6 29 29 H 1.08991 * 109.47306 * 295.95852 * 8 7 6 30 30 H 1.09000 * 109.46785 * 55.95909 * 8 7 6 31 31 H 1.09004 * 109.52511 * 57.68804 * 9 7 6 32 32 H 1.08998 * 109.52694 * 297.49696 * 9 7 6 33 33 H 1.08997 * 109.53967 * 62.88460 * 10 9 7 34 34 H 1.09002 * 109.54564 * 183.06884 * 10 9 7 35 35 H 1.08994 * 109.52196 * 176.92951 * 11 10 9 36 36 H 1.08993 * 109.52261 * 297.11739 * 11 10 9 37 37 H 0.96993 * 120.00425 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9902 -0.0058 5 16 3.9386 -0.7304 -0.0050 6 6 2.2246 -1.1245 0.0034 7 6 1.6538 -2.5192 0.0070 8 6 2.7914 -3.5364 -0.1028 9 6 0.8842 -2.7524 1.3096 10 6 0.2569 -4.1496 1.2798 11 6 -0.6428 -4.2691 0.0458 12 6 0.1871 -3.9759 -1.2091 13 1 0.9783 -4.7197 -1.3034 14 6 -0.7028 -4.0319 -2.4239 15 1 -1.7539 -4.2545 -2.3136 16 6 -0.1753 -3.7991 -3.6763 17 7 1.1044 -3.5276 -3.8108 18 14 -1.2784 -3.8693 -5.1823 19 1 -2.6667 -4.1907 -4.7644 20 1 -1.2612 -2.5535 -5.8703 21 1 -0.7844 -4.9191 -6.1092 22 8 0.7671 -2.6741 -1.1030 23 1 -0.3632 0.0122 1.0276 24 1 -0.3633 0.8838 -0.5244 25 1 -0.3633 -0.8960 -0.5032 26 1 1.7965 2.1464 0.0007 27 1 4.3078 1.7823 -0.0106 28 1 2.3853 -4.5451 -0.0278 29 1 3.2940 -3.4172 -1.0625 30 1 3.5054 -3.3713 0.7042 31 1 0.0991 -2.0027 1.4082 32 1 1.5681 -2.6783 2.1551 33 1 1.0443 -4.9018 1.2312 34 1 -0.3377 -4.3017 2.1806 35 1 -1.0499 -5.2785 -0.0119 36 1 -1.4586 -3.5500 0.1188 37 1 1.4756 -3.3642 -4.6918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381614319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:14 Heat of formation + Delta-G solvation = -40.811100 kcal Electronic energy + Delta-G solvation = -19220.467064 eV Core-core repulsion = 16474.339370 eV Total energy + Delta-G solvation = -2746.127694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.79920 -38.65577 -35.14561 -34.08750 -33.30632 -31.26792 -29.54017 -27.88802 -27.01539 -24.34628 -23.69082 -22.70983 -20.02743 -19.36296 -18.64985 -17.95316 -16.69561 -16.64667 -16.15013 -15.70900 -15.36422 -14.92432 -14.78555 -14.15929 -14.12011 -13.74800 -13.37248 -13.24119 -12.97237 -12.87189 -12.83602 -12.77716 -12.63241 -12.44534 -12.32705 -12.02316 -11.73662 -11.65046 -11.47839 -11.22115 -10.79578 -10.46604 -9.67177 -9.37061 -9.12616 -8.10769 -6.29504 0.15699 0.80286 1.19861 1.39455 1.41559 1.52793 1.88165 2.41878 3.08949 3.63690 3.90206 4.06971 4.09512 4.17276 4.24138 4.42190 4.47181 4.63802 4.67950 4.69390 4.74344 4.82934 4.86876 4.90562 5.03339 5.11187 5.16142 5.21960 5.27403 5.32260 5.33935 5.40160 5.60971 5.76449 5.77435 5.86229 6.28453 6.72783 7.28910 7.46199 8.95849 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.007740 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.030772 B = 3616.670024 C = 4106.709111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.105 4.105 3 C -0.140 4.140 4 C -0.215 4.215 5 S 0.086 5.914 6 C -0.178 4.178 7 C 0.173 3.827 8 C -0.165 4.165 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.138 4.138 12 C 0.216 3.784 13 H -0.011 1.011 14 C -0.547 4.547 15 H 0.062 0.938 16 C 0.029 3.971 17 N -0.891 5.891 18 Si 0.953 3.047 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.278 1.278 22 O -0.361 6.361 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.160 0.840 27 H 0.193 0.807 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 6.339 10.732 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.170 4.170 4 C -0.350 4.350 5 S 0.351 5.649 6 C -0.295 4.295 7 C 0.131 3.869 8 C -0.223 4.223 9 C -0.166 4.166 10 C -0.153 4.153 11 C -0.176 4.176 12 C 0.161 3.839 13 H 0.006 0.994 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.174 4.174 17 N -0.528 5.528 18 Si 0.778 3.222 19 H -0.187 1.187 20 H -0.210 1.210 21 H -0.203 1.203 22 O -0.281 6.281 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.178 0.822 27 H 0.210 0.790 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.610 5.690 10.480 12.785 hybrid contribution -1.493 0.463 -1.110 1.917 sum 3.117 6.153 9.370 11.635 Atomic orbital electron populations 1.20605 0.89710 1.03009 1.02116 1.19127 0.98205 0.91944 1.02411 1.20265 0.93162 0.99430 1.04127 1.25917 1.00125 0.98835 1.10102 1.83953 1.05451 1.01616 1.73860 1.24300 0.96108 0.98272 1.10793 1.19583 0.89991 0.88231 0.89087 1.22319 0.98591 1.00251 1.01150 1.22117 1.00015 0.98076 0.96437 1.21652 0.99037 0.96436 0.98144 1.22164 0.98791 1.00844 0.95817 1.19604 0.90403 0.81812 0.92127 0.99379 1.21453 0.95698 1.49713 0.91560 0.91959 1.25832 0.96074 0.93547 1.01930 1.70180 1.13265 1.45857 1.23457 0.85606 0.79628 0.77522 0.79450 1.18660 1.20990 1.20327 1.88339 1.60065 1.34156 1.45553 0.90410 0.91283 0.92079 0.82208 0.79033 0.91934 0.94301 0.90791 0.91066 0.90364 0.92093 0.89841 0.92064 0.92916 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.23 8.50 71.24 0.61 -2.62 16 2 C -0.10 -3.69 5.73 -20.91 -0.12 -3.81 16 3 C -0.14 -4.03 9.98 21.22 0.21 -3.82 16 4 C -0.21 -5.76 11.23 66.72 0.75 -5.01 16 5 S 0.09 2.73 21.80 -56.49 -1.23 1.50 16 6 C -0.18 -6.76 5.35 24.59 0.13 -6.63 16 7 C 0.17 7.04 0.67 -11.51 -0.01 7.03 16 8 C -0.17 -6.57 7.06 71.98 0.51 -6.06 16 9 C -0.13 -4.34 4.78 30.69 0.15 -4.19 16 10 C -0.12 -3.83 5.71 30.72 0.18 -3.65 16 11 C -0.14 -5.69 5.38 30.75 0.17 -5.52 16 12 C 0.22 11.10 2.18 29.94 0.07 11.16 16 13 H -0.01 -0.63 6.44 -2.39 -0.02 -0.65 16 14 C -0.55 -30.88 8.79 25.60 0.23 -30.65 16 15 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 16 C 0.03 1.65 5.40 84.65 0.46 2.11 16 17 N -0.89 -53.67 12.84 21.45 0.28 -53.39 16 18 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 O -0.36 -18.37 7.33 -148.98 -1.09 -19.47 16 23 H 0.08 2.23 7.61 -2.39 -0.02 2.21 16 24 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 25 H 0.06 2.55 5.81 -2.39 -0.01 2.53 16 26 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 27 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.06 2.50 5.00 -2.39 -0.01 2.49 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.45 7.67 -2.39 -0.02 2.43 16 31 H 0.07 2.39 5.92 -2.39 -0.01 2.38 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.99 6.53 -2.39 -0.02 1.97 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.06 2.40 8.14 -2.39 -0.02 2.39 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -65.32 299.57 4.35 -60.97 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.06 Total: 15.55 kcal Atomic # 6 Polarization: -54.96 SS G_CDS: 3.31 Total: -51.65 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.28 Total: -53.39 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.09 Total: -19.47 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.23 Total: 1.50 kcal Total: -65.32 4.35 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381614319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.158 kcal (2) G-P(sol) polarization free energy of solvation -65.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds