Wall clock time and date at job start Mon Mar 30 2020 07:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00147 * 2 1 4 4 H 1.48501 * 109.46993 * 239.99830 * 3 2 1 5 5 H 1.48498 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46977 * 120.00410 * 3 2 1 7 7 C 1.37886 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.33633 * 122.74891 * 84.97712 * 10 9 7 12 12 S 1.76203 * 107.92198 * 180.02562 * 11 10 9 13 13 C 1.70971 * 90.28453 * 0.02562 * 12 11 10 14 14 C 1.50701 * 124.91841 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.46921 * 270.02378 * 14 13 12 16 16 C 1.46839 * 111.00222 * 294.20814 * 15 14 13 17 17 C 1.53034 * 109.52552 * 174.16216 * 16 15 14 18 18 C 1.53123 * 109.28182 * 59.17780 * 17 16 15 19 19 C 1.53120 * 109.16070 * 302.35293 * 18 17 16 20 20 C 1.46849 * 110.99649 * 169.99608 * 15 14 13 21 21 N 1.29027 * 110.16675 * 0.24446 * 13 12 11 22 22 H 0.97000 * 119.99769 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46797 * 60.00811 * 9 7 2 24 24 H 1.09000 * 109.46946 * 300.00741 * 9 7 2 25 25 H 1.07993 * 126.04448 * 0.03922 * 11 10 9 26 26 H 1.09002 * 109.47060 * 30.02559 * 14 13 12 27 27 H 1.09001 * 109.47380 * 150.02647 * 14 13 12 28 28 H 1.09006 * 109.46266 * 294.17473 * 16 15 14 29 29 H 1.09002 * 109.46276 * 54.14664 * 16 15 14 30 30 H 1.09006 * 109.50444 * 299.24199 * 17 16 15 31 31 H 1.09003 * 109.50687 * 179.12283 * 17 16 15 32 32 H 1.08993 * 109.52832 * 182.44067 * 18 17 16 33 33 H 1.09005 * 109.51783 * 62.25186 * 18 17 16 34 34 H 1.09005 * 109.50142 * 297.71204 * 19 18 17 35 35 H 1.08998 * 109.50777 * 177.59101 * 19 18 17 36 36 H 1.08991 * 109.46839 * 305.85721 * 20 15 14 37 37 H 1.09001 * 109.46094 * 65.83266 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6447 -0.0005 11 6 2.7747 -4.1302 1.1191 12 16 3.8521 -5.4501 0.6698 13 6 3.4638 -5.2173 -0.9788 14 6 4.0252 -6.0260 -2.1198 15 7 5.2561 -5.3917 -2.6104 16 6 4.9703 -4.0824 -3.2106 17 6 6.2849 -3.3899 -3.5771 18 6 7.0601 -4.2666 -4.5645 19 6 7.3025 -5.6405 -3.9336 20 6 5.9585 -6.2678 -3.5567 21 7 2.6247 -4.2453 -1.1052 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5568 -0.8904 24 1 0.6245 -2.5571 0.8896 25 1 2.5874 -3.7764 2.1221 26 1 4.2493 -7.0352 -1.7742 27 1 3.2940 -6.0723 -2.9268 28 1 4.3687 -4.2184 -4.1093 29 1 4.4226 -3.4673 -2.4966 30 1 6.8812 -3.2411 -2.6768 31 1 6.0720 -2.4247 -4.0369 32 1 8.0166 -3.7976 -4.7949 33 1 6.4807 -4.3835 -5.4804 34 1 7.9148 -5.5272 -3.0389 35 1 7.8166 -6.2835 -4.6480 36 1 6.1284 -7.2400 -3.0942 37 1 5.3522 -6.3935 -4.4538 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382104561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:36 Heat of formation + Delta-G solvation = 30.904677 kcal Electronic energy + Delta-G solvation = -17947.023005 eV Core-core repulsion = 15236.297891 eV Total energy + Delta-G solvation = -2710.725114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48880 -38.50340 -34.14185 -33.03696 -30.94749 -30.54890 -27.90212 -26.85739 -24.09676 -23.10216 -23.03326 -21.09604 -19.72033 -18.94459 -16.86799 -16.36399 -16.11582 -15.13200 -14.91751 -14.54562 -14.41407 -13.77960 -13.70357 -13.46303 -12.97431 -12.71353 -12.44221 -12.06382 -11.99671 -11.75847 -11.48052 -11.18940 -11.04156 -10.73246 -10.70142 -10.46288 -10.41864 -10.32637 -9.72818 -9.46957 -8.97840 -8.76760 -8.41702 -8.30325 -7.88282 -6.04132 -4.06980 1.36179 2.01693 2.41121 3.32879 3.36428 3.38791 3.55672 4.05141 4.45287 4.59749 4.77554 4.87624 4.90873 5.13287 5.30626 5.31771 5.44806 5.49156 5.53879 5.62275 5.73207 5.86800 5.89201 5.94693 5.97983 6.08627 6.13521 6.34120 6.38739 6.40271 7.01155 7.08248 7.13588 7.49297 7.56799 7.91283 8.29553 8.58825 8.95498 9.55784 11.06270 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.005778 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.526225 B = 4845.202396 C = 5930.487702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.085 3.915 10 C 0.110 3.890 11 C -0.262 4.262 12 S 0.072 5.928 13 C 0.044 3.956 14 C 0.137 3.863 15 N -0.533 5.533 16 C 0.053 3.947 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.115 4.115 20 C 0.057 3.943 21 N -0.456 5.456 22 H 0.263 0.737 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.171 0.829 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.937 -12.974 -5.435 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.045 3.955 10 C -0.020 4.020 11 C -0.400 4.400 12 S 0.324 5.676 13 C -0.235 4.235 14 C 0.007 3.993 15 N -0.259 5.259 16 C -0.075 4.075 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.071 4.071 21 N -0.172 5.172 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.188 0.812 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.554 -13.331 -5.021 18.988 hybrid contribution -0.681 1.590 -0.590 1.828 sum 11.873 -11.741 -5.611 17.615 Atomic orbital electron populations 1.69940 1.05995 1.26971 1.50397 1.24963 0.94874 0.99154 0.95158 0.86583 0.79531 0.82773 0.78722 1.20180 1.21168 1.20172 1.20935 0.92893 0.89731 1.51156 0.92706 1.17977 0.91347 0.87352 0.98784 1.21189 0.98547 0.97127 0.85137 1.26737 1.05681 1.03156 1.04462 1.83443 1.45133 1.34540 1.04505 1.26594 0.99954 0.99674 0.97297 1.20458 0.90784 0.95114 0.92981 1.61886 1.21948 1.03822 1.38215 1.22177 0.96726 0.90079 0.98518 1.21585 0.96343 0.98116 0.99404 1.21593 1.00119 0.95834 0.98334 1.21568 0.96583 0.96361 1.00748 1.22073 0.95034 0.95990 0.94014 1.66210 1.11817 1.06624 1.32569 0.92741 0.94437 0.94578 0.81208 0.89170 0.92106 0.94816 0.89020 0.91219 0.91466 0.92037 0.92415 0.91075 0.91746 0.90813 0.94887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.52 9.09 -34.44 -0.31 -14.83 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.09 2.26 5.39 -29.04 -0.16 2.11 16 10 C 0.11 2.52 5.93 -84.23 -0.50 2.02 16 11 C -0.26 -5.22 11.14 29.12 0.32 -4.90 16 12 S 0.07 1.17 23.18 -107.50 -2.49 -1.32 16 13 C 0.04 0.77 6.05 -13.46 -0.08 0.69 16 14 C 0.14 1.92 5.55 -4.97 -0.03 1.89 16 15 N -0.53 -7.27 4.65 -236.11 -1.10 -8.37 16 16 C 0.05 0.80 5.31 -3.84 -0.02 0.78 16 17 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 18 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 19 C -0.11 -1.10 6.09 -26.65 -0.16 -1.27 16 20 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 21 N -0.46 -9.82 9.56 -8.06 -0.08 -9.90 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.17 3.14 8.06 -52.49 -0.42 2.72 16 26 H 0.09 1.02 7.99 -51.93 -0.41 0.60 16 27 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.75 6.38 -51.93 -0.33 1.41 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.67 8.01 -51.93 -0.42 0.25 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -30.35 315.13 -10.35 -40.70 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.78 Total: -2.41 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.38 Total: -14.41 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.44 Total: -44.11 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.35 -10.35 -40.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382104561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.608 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds