Wall clock time and date at job start Mon Mar 30 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 C 1.50689 * 109.82976 * 305.89124 * 3 2 1 5 5 C 1.38419 * 122.54295 * 88.84592 * 4 3 2 6 6 C 1.33397 * 114.92562 * 179.76214 * 5 4 3 7 7 S 1.75890 * 109.58661 * 0.47971 * 6 5 4 8 8 C 1.33391 * 122.54094 * 269.13954 * 4 3 2 9 9 C 1.54386 * 109.83102 * 184.99724 * 3 2 1 10 10 C 1.55297 * 102.25609 * 219.13425 * 9 3 2 11 11 C 1.54949 * 100.94178 * 34.13551 * 10 9 3 12 12 C 1.52998 * 110.31110 * 82.56765 * 11 10 9 13 13 C 1.50697 * 110.30913 * 204.63873 * 11 10 9 14 14 H 1.08003 * 120.00246 * 241.48749 * 13 11 10 15 15 C 1.37876 * 119.99979 * 61.49288 * 13 11 10 16 16 N 1.31510 * 120.00262 * 2.47893 * 15 13 11 17 17 Si 1.86806 * 119.99971 * 182.48865 * 15 13 11 18 18 H 1.48501 * 109.47140 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47028 * 299.99428 * 17 15 13 20 20 H 1.48500 * 109.47190 * 59.99562 * 17 15 13 21 21 O 1.43247 * 109.82477 * 66.87142 * 3 2 1 22 22 H 1.09003 * 109.46771 * 59.99436 * 1 2 3 23 23 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47248 * 299.99835 * 1 2 3 25 25 H 1.09001 * 109.46995 * 240.00903 * 2 1 3 26 26 H 1.08995 * 109.47368 * 120.00712 * 2 1 3 27 27 H 1.08000 * 122.53951 * 0.02562 * 5 4 3 28 28 H 1.07996 * 125.20866 * 180.20423 * 6 5 4 29 29 H 1.08006 * 125.20397 * 0.02562 * 8 4 3 30 30 H 1.09004 * 110.84213 * 100.94365 * 9 3 2 31 31 H 1.09001 * 110.84802 * 337.32883 * 9 3 2 32 32 H 1.08994 * 111.12774 * 276.21540 * 10 9 3 33 33 H 1.09000 * 111.16418 * 152.06834 * 10 9 3 34 34 H 1.08995 * 109.47551 * 176.63395 * 12 11 10 35 35 H 1.09004 * 109.47355 * 296.63844 * 12 11 10 36 36 H 1.09004 * 109.47008 * 56.63395 * 12 11 10 37 37 H 0.97001 * 119.99893 * 354.55415 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4269 2.2015 -1.1484 5 6 0.2210 2.8722 -1.0384 6 6 -0.1777 3.4975 -2.1472 7 16 1.0010 3.2379 -3.4268 8 6 2.0022 2.2731 -2.3497 9 6 3.5786 1.4541 -0.1265 10 6 3.9798 2.6054 0.8354 11 6 2.8994 2.4588 1.9364 12 6 3.3035 1.3731 2.9358 13 6 2.6946 3.7721 2.6465 14 1 2.8935 3.8504 3.7051 15 6 2.2533 4.8737 1.9447 16 7 1.9645 4.7666 0.6662 17 14 2.0659 6.5188 2.8098 18 1 1.5805 7.5348 1.8416 19 1 1.0887 6.3857 3.9200 20 1 3.3801 6.9437 3.3553 21 8 1.7029 2.0770 1.2393 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 -0.3515 2.8916 -0.1228 28 1 -1.0873 4.0712 -2.2457 29 1 2.9394 1.8092 -2.6199 30 1 3.8820 1.6794 -1.1490 31 1 4.0023 0.5061 0.2051 32 1 3.9076 3.5739 0.3407 33 1 4.9789 2.4483 1.2421 34 1 2.5649 1.3225 3.7358 35 1 3.3538 0.4107 2.4263 36 1 4.2798 1.6124 3.3573 37 1 2.1363 3.9345 0.1982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382193804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:39 Heat of formation + Delta-G solvation = -16.463813 kcal Electronic energy + Delta-G solvation = -19769.567801 eV Core-core repulsion = 17024.495884 eV Total energy + Delta-G solvation = -2745.071917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.82003 -36.71050 -33.61766 -31.81974 -31.20309 -29.95913 -28.22461 -25.36098 -24.35782 -23.64140 -21.73882 -19.97300 -19.64854 -17.75792 -17.24885 -16.96903 -15.15818 -14.92341 -14.05253 -13.71157 -13.56368 -13.45740 -12.73695 -12.63882 -12.39486 -12.13898 -11.90617 -11.80743 -11.52137 -11.36363 -11.04599 -10.81707 -10.77709 -10.60028 -10.46209 -10.35705 -10.22327 -10.03839 -9.83186 -9.63339 -8.83706 -8.27603 -8.11585 -8.04019 -7.66588 -6.16600 -4.03943 1.67881 2.30588 2.58800 3.46788 3.47582 3.49948 3.66843 4.57422 4.82380 5.31766 5.38124 5.52355 5.55836 5.63121 5.76703 5.86639 5.91100 5.98877 6.19462 6.25221 6.29654 6.33949 6.39043 6.45263 6.46962 6.60065 6.68080 6.76201 6.76768 6.80556 6.95099 7.02814 7.10565 7.24433 7.45949 8.22846 8.42621 8.67454 9.02236 9.76631 11.19556 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.010226 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.667386 B = 2737.338397 C = 3631.858498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.161 3.839 4 C -0.066 4.066 5 C -0.072 4.072 6 C -0.217 4.217 7 S 0.044 5.956 8 C -0.222 4.222 9 C -0.152 4.152 10 C -0.147 4.147 11 C 0.214 3.786 12 C -0.143 4.143 13 C -0.601 4.601 14 H 0.053 0.947 15 C 0.036 3.964 16 N -0.887 5.887 17 Si 1.060 2.940 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.290 1.290 21 O -0.354 6.354 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 -6.551 -5.618 8.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.117 3.883 4 C -0.079 4.079 5 C -0.102 4.102 6 C -0.351 4.351 7 S 0.306 5.694 8 C -0.357 4.357 9 C -0.190 4.190 10 C -0.185 4.185 11 C 0.177 3.823 12 C -0.201 4.201 13 C -0.638 4.638 14 H 0.071 0.929 15 C -0.174 4.174 16 N -0.524 5.524 17 Si 0.889 3.111 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.216 1.216 21 O -0.273 6.273 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.157 0.843 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.311 -4.507 -7.303 8.681 hybrid contribution 0.709 -1.922 1.689 2.656 sum -0.602 -6.429 -5.614 8.556 Atomic orbital electron populations 1.21739 0.95703 1.00238 1.02646 1.21818 0.96822 0.95664 1.01108 1.20328 0.92358 0.90205 0.85388 1.19065 0.95303 0.99190 0.94319 1.19892 0.95940 0.96346 0.98019 1.25306 1.04136 1.08861 0.96826 1.83741 1.17043 1.52031 1.16604 1.25217 1.04656 1.08504 0.97287 1.23277 0.95208 0.99826 1.00643 1.23384 0.99632 0.98001 0.97511 1.20055 0.81285 0.92637 0.88349 1.22095 1.00213 0.97850 0.99939 1.21794 1.52247 0.93247 0.96524 0.92906 1.25640 0.92954 1.02291 0.96527 1.70654 1.39683 1.32763 1.09283 0.83705 0.76362 0.75857 0.75204 1.20862 1.21594 1.21620 1.88719 1.33053 1.76579 1.28996 0.92606 0.93923 0.91880 0.92323 0.91799 0.84341 0.82762 0.82650 0.91473 0.91804 0.89989 0.92602 0.93329 0.95031 0.93380 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.12 37.16 0.34 -2.05 16 2 C -0.12 -1.99 5.10 -26.73 -0.14 -2.13 16 3 C 0.16 3.23 0.65 -91.05 -0.06 3.17 16 4 C -0.07 -1.31 2.47 -106.25 -0.26 -1.58 16 5 C -0.07 -1.48 6.72 -41.21 -0.28 -1.76 16 6 C -0.22 -3.98 11.23 29.04 0.33 -3.65 16 7 S 0.04 0.73 23.34 -107.50 -2.51 -1.77 16 8 C -0.22 -4.01 10.06 29.04 0.29 -3.72 16 9 C -0.15 -2.92 5.61 -24.79 -0.14 -3.06 16 10 C -0.15 -3.35 5.45 -24.48 -0.13 -3.49 16 11 C 0.21 5.25 0.82 -90.75 -0.07 5.18 16 12 C -0.14 -3.08 8.77 37.16 0.33 -2.75 16 13 C -0.60 -16.68 8.37 -34.44 -0.29 -16.97 16 14 H 0.05 1.47 7.77 -52.48 -0.41 1.06 16 15 C 0.04 1.00 5.11 -17.82 -0.09 0.91 16 16 N -0.89 -25.43 12.46 55.43 0.69 -24.74 16 17 Si 1.06 25.00 29.90 -169.99 -5.08 19.92 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 O -0.35 -8.61 7.83 -35.23 -0.28 -8.88 16 22 H 0.05 0.92 6.15 -51.93 -0.32 0.60 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.13 7.90 -51.93 -0.41 0.72 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 27 H 0.14 3.09 7.88 -52.49 -0.41 2.67 16 28 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 29 H 0.16 2.49 6.50 -52.48 -0.34 2.15 16 30 H 0.07 1.19 5.56 -51.93 -0.29 0.90 16 31 H 0.06 1.10 7.60 -51.93 -0.39 0.71 16 32 H 0.08 2.12 5.99 -51.93 -0.31 1.81 16 33 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.60 7.31 -51.93 -0.38 0.22 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.30 8.00 1.97 -40.82 -0.08 7.92 16 LS Contribution 295.44 15.07 4.45 4.45 Total: -1.00 -29.59 295.44 -7.98 -37.57 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.08 Total: 5.34 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -0.18 Total: -31.89 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.69 Total: -24.74 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.28 Total: -8.88 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.59 -7.98 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382193804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.110 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds