Wall clock time and date at job start Mon Mar 30 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 C 1.50689 * 109.82976 * 305.89124 * 3 2 1 5 5 C 1.38419 * 122.54295 * 88.84592 * 4 3 2 6 6 C 1.33397 * 114.92562 * 179.76214 * 5 4 3 7 7 S 1.75890 * 109.58661 * 0.47971 * 6 5 4 8 8 C 1.33391 * 122.54094 * 269.13954 * 4 3 2 9 9 C 1.54386 * 109.83102 * 184.99724 * 3 2 1 10 10 C 1.55297 * 102.25609 * 219.13425 * 9 3 2 11 11 C 1.54949 * 100.94178 * 34.13551 * 10 9 3 12 12 C 1.52998 * 110.31110 * 82.56765 * 11 10 9 13 13 C 1.50697 * 110.30913 * 204.63873 * 11 10 9 14 14 H 1.08003 * 120.00246 * 241.48749 * 13 11 10 15 15 C 1.37876 * 119.99979 * 61.49288 * 13 11 10 16 16 N 1.31510 * 120.00262 * 2.47893 * 15 13 11 17 17 Si 1.86806 * 119.99971 * 182.48865 * 15 13 11 18 18 H 1.48501 * 109.47140 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.47028 * 299.99428 * 17 15 13 20 20 H 1.48500 * 109.47190 * 59.99562 * 17 15 13 21 21 O 1.43247 * 109.82477 * 66.87142 * 3 2 1 22 22 H 1.09003 * 109.46771 * 59.99436 * 1 2 3 23 23 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47248 * 299.99835 * 1 2 3 25 25 H 1.09001 * 109.46995 * 240.00903 * 2 1 3 26 26 H 1.08995 * 109.47368 * 120.00712 * 2 1 3 27 27 H 1.08000 * 122.53951 * 0.02562 * 5 4 3 28 28 H 1.07996 * 125.20866 * 180.20423 * 6 5 4 29 29 H 1.08006 * 125.20397 * 0.02562 * 8 4 3 30 30 H 1.09004 * 110.84213 * 100.94365 * 9 3 2 31 31 H 1.09001 * 110.84802 * 337.32883 * 9 3 2 32 32 H 1.08994 * 111.12774 * 276.21540 * 10 9 3 33 33 H 1.09000 * 111.16418 * 152.06834 * 10 9 3 34 34 H 1.08995 * 109.47551 * 176.63395 * 12 11 10 35 35 H 1.09004 * 109.47355 * 296.63844 * 12 11 10 36 36 H 1.09004 * 109.47008 * 56.63395 * 12 11 10 37 37 H 0.97001 * 119.99893 * 354.55415 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4269 2.2015 -1.1484 5 6 0.2210 2.8722 -1.0384 6 6 -0.1777 3.4975 -2.1472 7 16 1.0010 3.2379 -3.4268 8 6 2.0022 2.2731 -2.3497 9 6 3.5786 1.4541 -0.1265 10 6 3.9798 2.6054 0.8354 11 6 2.8994 2.4588 1.9364 12 6 3.3035 1.3731 2.9358 13 6 2.6946 3.7721 2.6465 14 1 2.8935 3.8504 3.7051 15 6 2.2533 4.8737 1.9447 16 7 1.9645 4.7666 0.6662 17 14 2.0659 6.5188 2.8098 18 1 1.5805 7.5348 1.8416 19 1 1.0887 6.3857 3.9200 20 1 3.3801 6.9437 3.3553 21 8 1.7029 2.0770 1.2393 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 -0.3515 2.8916 -0.1228 28 1 -1.0873 4.0712 -2.2457 29 1 2.9394 1.8092 -2.6199 30 1 3.8820 1.6794 -1.1490 31 1 4.0023 0.5061 0.2051 32 1 3.9076 3.5739 0.3407 33 1 4.9789 2.4483 1.2421 34 1 2.5649 1.3225 3.7358 35 1 3.3538 0.4107 2.4263 36 1 4.2798 1.6124 3.3573 37 1 2.1363 3.9345 0.1982 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382193804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:39 Heat of formation + Delta-G solvation = -31.934376 kcal Electronic energy + Delta-G solvation = -19770.238655 eV Core-core repulsion = 17024.495884 eV Total energy + Delta-G solvation = -2745.742771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42606 -38.29272 -35.29977 -33.56824 -32.91579 -31.56295 -29.76727 -26.96503 -26.30727 -25.10863 -23.26920 -21.53991 -21.38796 -19.31915 -19.01132 -18.56642 -16.74270 -16.50889 -15.69360 -15.51848 -15.17090 -14.99544 -14.43440 -14.21284 -13.95250 -13.57539 -13.43741 -13.37045 -13.08693 -12.95375 -12.74356 -12.64046 -12.37867 -12.24297 -12.12213 -11.92554 -11.84079 -11.72676 -11.34891 -11.30813 -10.66838 -10.28586 -9.88856 -9.54488 -9.06232 -8.27282 -6.17377 0.23264 0.92149 1.15259 1.53885 1.60210 1.79318 1.98939 2.63680 3.10072 3.61299 3.89485 3.91624 4.03378 4.18663 4.33649 4.41594 4.47968 4.49643 4.59559 4.72275 4.74497 4.79326 4.87522 4.92388 5.03969 5.04961 5.10415 5.19936 5.23132 5.28757 5.43447 5.46147 5.58981 5.64927 5.74847 6.23819 6.34589 6.92325 6.97299 7.70919 9.12586 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017177 B = 0.010226 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.667386 B = 2737.338397 C = 3631.858498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.152 3.848 4 C -0.087 4.087 5 C -0.095 4.095 6 C -0.227 4.227 7 S 0.101 5.899 8 C -0.228 4.228 9 C -0.142 4.142 10 C -0.145 4.145 11 C 0.200 3.800 12 C -0.136 4.136 13 C -0.628 4.628 14 H 0.039 0.961 15 C -0.007 4.007 16 N -0.912 5.912 17 Si 1.098 2.902 18 H -0.287 1.287 19 H -0.283 1.283 20 H -0.275 1.275 21 O -0.381 6.381 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.171 0.829 29 H 0.179 0.821 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -7.703 -7.050 10.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.109 3.891 4 C -0.099 4.099 5 C -0.125 4.125 6 C -0.362 4.362 7 S 0.364 5.636 8 C -0.363 4.363 9 C -0.180 4.180 10 C -0.183 4.183 11 C 0.163 3.837 12 C -0.193 4.193 13 C -0.665 4.665 14 H 0.057 0.943 15 C -0.213 4.213 16 N -0.550 5.550 17 Si 0.923 3.077 18 H -0.212 1.212 19 H -0.209 1.209 20 H -0.200 1.200 21 O -0.301 6.301 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.125 0.875 28 H 0.188 0.812 29 H 0.196 0.804 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.543 -5.678 -8.740 10.436 hybrid contribution 0.440 -1.569 2.070 2.635 sum -0.102 -7.248 -6.669 9.850 Atomic orbital electron populations 1.21665 0.95592 1.01412 1.01059 1.21817 0.96950 0.93819 1.02461 1.20621 0.93079 0.91546 0.83826 1.19076 0.95484 1.00254 0.95126 1.19735 0.96744 0.98396 0.97603 1.25643 1.05274 1.08091 0.97203 1.83505 1.15117 1.50487 1.14488 1.25567 1.05447 1.08210 0.97066 1.23291 0.94531 0.99430 1.00717 1.23205 0.99661 0.97702 0.97759 1.20131 0.81889 0.92269 0.89439 1.21985 1.00120 0.98110 0.99097 1.22157 1.52617 0.95580 0.96192 0.94282 1.26699 0.92687 1.05093 0.96817 1.70665 1.40875 1.33619 1.09862 0.83184 0.77084 0.72878 0.74513 1.21241 1.20896 1.20032 1.88635 1.33128 1.77441 1.30889 0.93116 0.91216 0.94623 0.89614 0.91542 0.87548 0.81172 0.80362 0.89815 0.89163 0.93598 0.91476 0.94476 0.92631 0.92572 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.12 71.98 0.66 -3.79 16 2 C -0.11 -3.60 5.10 30.60 0.16 -3.45 16 3 C 0.15 5.93 0.65 -11.07 -0.01 5.92 16 4 C -0.09 -3.37 2.47 -20.92 -0.05 -3.43 16 5 C -0.09 -3.92 6.72 21.22 0.14 -3.78 16 6 C -0.23 -8.18 11.23 66.72 0.75 -7.43 16 7 S 0.10 3.15 23.34 -56.49 -1.32 1.83 16 8 C -0.23 -7.71 10.06 66.72 0.67 -7.04 16 9 C -0.14 -5.13 5.61 31.85 0.18 -4.95 16 10 C -0.14 -6.51 5.45 32.05 0.17 -6.34 16 11 C 0.20 9.85 0.82 -10.87 -0.01 9.84 16 12 C -0.14 -5.71 8.77 71.98 0.63 -5.08 16 13 C -0.63 -35.66 8.37 25.60 0.21 -35.44 16 14 H 0.04 2.23 7.77 -2.91 -0.02 2.21 16 15 C -0.01 -0.39 5.11 84.66 0.43 0.04 16 16 N -0.91 -53.36 12.46 21.45 0.27 -53.09 16 17 Si 1.10 51.39 29.90 68.60 2.05 53.44 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 O -0.38 -18.71 7.83 -148.98 -1.17 -19.88 16 22 H 0.05 1.64 6.15 -2.39 -0.01 1.63 16 23 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.03 1.30 7.90 -2.39 -0.02 1.28 16 25 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.07 2.08 7.81 -2.39 -0.02 2.06 16 27 H 0.11 5.02 7.88 -2.91 -0.02 5.00 16 28 H 0.17 5.35 8.06 -2.91 -0.02 5.32 16 29 H 0.18 5.06 6.50 -2.91 -0.02 5.04 16 30 H 0.08 2.72 5.56 -2.38 -0.01 2.70 16 31 H 0.09 2.76 7.60 -2.39 -0.02 2.75 16 32 H 0.05 2.38 5.99 -2.39 -0.01 2.37 16 33 H 0.07 2.77 8.03 -2.39 -0.02 2.75 16 34 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 2.02 7.31 -2.38 -0.02 2.00 16 36 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.30 16.54 1.97 -92.71 -0.18 16.36 16 Total: -1.00 -64.90 295.44 5.41 -59.49 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.64 Total: 23.14 kcal Atomic # 6 Polarization: -68.86 SS G_CDS: 3.94 Total: -64.92 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.27 Total: -53.09 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -1.17 Total: -19.88 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.32 Total: 1.83 kcal Total: -64.90 5.41 -59.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382193804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.552 kcal (2) G-P(sol) polarization free energy of solvation -64.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds