Wall clock time and date at job start Mon Mar 30 2020 06:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50700 * 109.82466 * 59.29964 * 3 2 1 5 5 C 1.38430 * 122.54086 * 270.44153 * 4 3 2 6 6 C 1.33385 * 114.91852 * 179.75435 * 5 4 3 7 7 S 1.75883 * 109.59773 * 0.47976 * 6 5 4 8 8 C 1.33392 * 122.54015 * 90.72157 * 4 3 2 9 9 C 1.54383 * 109.83564 * 180.18332 * 3 2 1 10 10 C 1.55308 * 102.25024 * 98.15513 * 9 3 2 11 11 C 1.54944 * 100.94136 * 34.13937 * 10 9 3 12 12 C 1.53006 * 110.31303 * 82.56630 * 11 10 9 13 13 C 1.50703 * 110.30986 * 204.64058 * 11 10 9 14 14 H 1.07996 * 119.99722 * 359.97438 * 13 11 10 15 15 C 1.37875 * 119.99891 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00349 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99817 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47091 * 89.99894 * 17 15 13 19 19 H 1.48502 * 109.46966 * 209.99898 * 17 15 13 20 20 H 1.48496 * 109.47201 * 329.99343 * 17 15 13 21 21 O 1.43235 * 109.83243 * 298.41623 * 3 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.08004 * 122.53723 * 359.97438 * 5 4 3 28 28 H 1.08012 * 125.19834 * 180.20697 * 6 5 4 29 29 H 1.07993 * 125.19944 * 0.03110 * 8 4 3 30 30 H 1.09000 * 110.85179 * 216.34946 * 9 3 2 31 31 H 1.08998 * 110.84465 * 339.97400 * 9 3 2 32 32 H 1.09004 * 111.12220 * 152.05041 * 10 9 3 33 33 H 1.09001 * 111.12803 * 276.21887 * 10 9 3 34 34 H 1.08994 * 109.46598 * 60.00121 * 12 11 10 35 35 H 1.08998 * 109.46903 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.46946 * 300.00352 * 12 11 10 37 37 H 0.96996 * 120.00386 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5280 2.1655 1.2190 5 6 0.3248 2.8499 1.2282 6 6 0.0173 3.4304 2.3890 7 16 1.2983 3.1305 3.5562 8 6 2.2026 2.1993 2.3693 9 6 3.5838 1.4521 -0.0046 10 6 3.9075 1.6711 -1.5078 11 6 2.7323 2.5879 -1.9311 12 6 3.0370 4.0431 -1.5694 13 6 2.4760 2.4603 -3.4107 14 1 3.0820 1.7954 -4.0082 15 6 1.4687 3.1931 -4.0015 16 7 0.7311 4.0032 -3.2739 17 14 1.1515 3.0354 -5.8356 18 1 0.1653 1.9516 -6.0760 19 1 0.6144 4.3179 -6.3572 20 1 2.4225 2.7116 -6.5318 21 8 1.5975 2.1143 -1.1851 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 -0.3180 2.9064 0.3621 28 1 -0.8792 4.0014 2.5814 29 1 3.1579 1.7273 2.5448 30 1 3.9685 2.2743 0.5988 31 1 3.9788 0.4972 0.3420 32 1 4.8650 2.1764 -1.6338 33 1 3.8875 0.7288 -2.0553 34 1 3.9421 4.3637 -2.0851 35 1 2.2023 4.6752 -1.8724 36 1 3.1835 4.1267 -0.4925 37 1 0.0222 4.5185 -3.6895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382193808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:42 Heat of formation + Delta-G solvation = -17.095631 kcal Electronic energy + Delta-G solvation = -19337.880360 eV Core-core repulsion = 16592.781046 eV Total energy + Delta-G solvation = -2745.099314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.56646 -36.74197 -33.54299 -31.97046 -31.21439 -29.60563 -28.16239 -25.48399 -24.80427 -23.42390 -22.04934 -19.87980 -19.46061 -17.89342 -17.07391 -16.46046 -15.27758 -14.86631 -14.45866 -13.85950 -13.64999 -13.11560 -12.76548 -12.53699 -12.35230 -12.21280 -12.04709 -11.72892 -11.59254 -11.16987 -11.00438 -10.85179 -10.74394 -10.60997 -10.54772 -10.32060 -10.24310 -10.02390 -9.85235 -9.40394 -8.99462 -8.47800 -8.33366 -7.93493 -7.90307 -5.95361 -4.11653 1.45285 2.08734 2.37841 3.27997 3.30826 3.37695 3.40071 4.42227 4.89310 5.29177 5.35871 5.48281 5.48495 5.56910 5.77520 5.81540 6.00180 6.05372 6.14491 6.24250 6.33504 6.42589 6.51207 6.55238 6.59711 6.72591 6.77367 6.87093 6.90530 6.94241 7.00435 7.07481 7.19828 7.40096 7.78648 8.18048 8.38729 8.67107 9.05414 9.59010 11.05892 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.006820 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.780082 B = 4104.701660 C = 4234.077946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.156 3.844 4 C -0.075 4.075 5 C -0.091 4.091 6 C -0.223 4.223 7 S 0.042 5.958 8 C -0.218 4.218 9 C -0.146 4.146 10 C -0.142 4.142 11 C 0.234 3.766 12 C -0.147 4.147 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.332 6.332 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.149 0.851 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.011 0.989 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.250 -3.690 10.236 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.112 3.888 4 C -0.087 4.087 5 C -0.121 4.121 6 C -0.358 4.358 7 S 0.304 5.696 8 C -0.353 4.353 9 C -0.183 4.183 10 C -0.180 4.180 11 C 0.197 3.803 12 C -0.205 4.205 13 C -0.559 4.559 14 H 0.079 0.921 15 C -0.124 4.124 16 N -0.495 5.495 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.251 6.251 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.030 0.970 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.116 -3.095 11.696 12.150 hybrid contribution -0.207 -0.391 -2.276 2.319 sum 0.909 -3.486 9.419 10.085 Atomic orbital electron populations 1.21699 0.95708 1.00133 1.02679 1.21708 0.96831 0.95360 1.00973 1.20439 0.91868 0.90876 0.85581 1.19431 0.94750 0.99009 0.95538 1.20217 0.97220 0.96806 0.97866 1.25463 1.03575 1.09648 0.97101 1.83887 1.15402 1.52858 1.17495 1.25280 1.04788 1.08582 0.96652 1.23204 0.95420 1.00960 0.98752 1.23306 1.00449 1.00934 0.93272 1.19905 0.80576 0.89134 0.90732 1.22102 1.01667 1.00583 0.96100 1.20994 1.17948 1.25969 0.90975 0.92139 1.24993 0.95402 0.94375 0.97599 1.69940 1.19301 1.25359 1.34937 0.86688 0.78553 0.77485 0.85774 1.20583 1.21225 1.19895 1.88880 1.32534 1.72960 1.30754 0.91237 0.93133 0.94133 0.92797 0.91443 0.83327 0.82480 0.82493 0.91407 0.91865 0.92049 0.91780 0.94997 0.88945 0.97035 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.27 37.16 0.34 -2.13 16 2 C -0.11 -1.93 5.06 -26.74 -0.14 -2.06 16 3 C 0.16 3.01 0.80 -91.05 -0.07 2.94 16 4 C -0.07 -1.35 4.08 -106.24 -0.43 -1.78 16 5 C -0.09 -1.66 7.86 -41.21 -0.32 -1.99 16 6 C -0.22 -3.50 11.23 29.04 0.33 -3.17 16 7 S 0.04 0.60 23.34 -107.50 -2.51 -1.91 16 8 C -0.22 -3.46 9.85 29.04 0.29 -3.17 16 9 C -0.15 -2.61 4.92 -24.78 -0.12 -2.73 16 10 C -0.14 -2.91 6.01 -24.48 -0.15 -3.06 16 11 C 0.23 5.69 0.73 -90.74 -0.07 5.63 16 12 C -0.15 -3.58 8.62 37.16 0.32 -3.26 16 13 C -0.52 -14.05 8.30 -34.44 -0.29 -14.33 16 14 H 0.06 1.61 7.76 -52.49 -0.41 1.20 16 15 C 0.08 2.21 5.28 -17.82 -0.09 2.12 16 16 N -0.86 -24.00 10.97 55.43 0.61 -23.39 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 O -0.33 -7.98 8.52 -35.23 -0.30 -8.28 16 22 H 0.07 1.36 7.74 -51.93 -0.40 0.96 16 23 H 0.05 0.84 6.22 -51.93 -0.32 0.51 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.15 3.00 7.86 -52.48 -0.41 2.58 16 28 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 29 H 0.16 2.19 7.35 -52.49 -0.39 1.80 16 30 H 0.07 1.19 6.70 -51.93 -0.35 0.84 16 31 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 32 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 33 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 2.50 5.93 -51.93 -0.31 2.20 16 36 H 0.01 0.25 7.53 -51.93 -0.39 -0.14 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -27.97 305.60 -8.49 -36.45 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.47 Total: 3.63 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: -0.40 Total: -26.99 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.61 Total: -23.39 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.30 Total: -8.28 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.51 Total: -1.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.97 -8.49 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382193808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.358 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds