Wall clock time and date at job start Mon Mar 30 2020 06:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50700 * 109.82466 * 59.29964 * 3 2 1 5 5 C 1.38430 * 122.54086 * 270.44153 * 4 3 2 6 6 C 1.33385 * 114.91852 * 179.75435 * 5 4 3 7 7 S 1.75883 * 109.59773 * 0.47976 * 6 5 4 8 8 C 1.33392 * 122.54015 * 90.72157 * 4 3 2 9 9 C 1.54383 * 109.83564 * 180.18332 * 3 2 1 10 10 C 1.55308 * 102.25024 * 98.15513 * 9 3 2 11 11 C 1.54944 * 100.94136 * 34.13937 * 10 9 3 12 12 C 1.53006 * 110.31303 * 82.56630 * 11 10 9 13 13 C 1.50703 * 110.30986 * 204.64058 * 11 10 9 14 14 H 1.07996 * 119.99722 * 359.97438 * 13 11 10 15 15 C 1.37875 * 119.99891 * 180.02562 * 13 11 10 16 16 N 1.31515 * 120.00349 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99817 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47091 * 89.99894 * 17 15 13 19 19 H 1.48502 * 109.46966 * 209.99898 * 17 15 13 20 20 H 1.48496 * 109.47201 * 329.99343 * 17 15 13 21 21 O 1.43235 * 109.83243 * 298.41623 * 3 2 1 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.08004 * 122.53723 * 359.97438 * 5 4 3 28 28 H 1.08012 * 125.19834 * 180.20697 * 6 5 4 29 29 H 1.07993 * 125.19944 * 0.03110 * 8 4 3 30 30 H 1.09000 * 110.85179 * 216.34946 * 9 3 2 31 31 H 1.08998 * 110.84465 * 339.97400 * 9 3 2 32 32 H 1.09004 * 111.12220 * 152.05041 * 10 9 3 33 33 H 1.09001 * 111.12803 * 276.21887 * 10 9 3 34 34 H 1.08994 * 109.46598 * 60.00121 * 12 11 10 35 35 H 1.08998 * 109.46903 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.46946 * 300.00352 * 12 11 10 37 37 H 0.96996 * 120.00386 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5280 2.1655 1.2190 5 6 0.3248 2.8499 1.2282 6 6 0.0173 3.4304 2.3890 7 16 1.2983 3.1305 3.5562 8 6 2.2026 2.1993 2.3693 9 6 3.5838 1.4521 -0.0046 10 6 3.9075 1.6711 -1.5078 11 6 2.7323 2.5879 -1.9311 12 6 3.0370 4.0431 -1.5694 13 6 2.4760 2.4603 -3.4107 14 1 3.0820 1.7954 -4.0082 15 6 1.4687 3.1931 -4.0015 16 7 0.7311 4.0032 -3.2739 17 14 1.1515 3.0354 -5.8356 18 1 0.1653 1.9516 -6.0760 19 1 0.6144 4.3179 -6.3572 20 1 2.4225 2.7116 -6.5318 21 8 1.5975 2.1143 -1.1851 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 -0.3180 2.9064 0.3621 28 1 -0.8792 4.0014 2.5814 29 1 3.1579 1.7273 2.5448 30 1 3.9685 2.2743 0.5988 31 1 3.9788 0.4972 0.3420 32 1 4.8650 2.1764 -1.6338 33 1 3.8875 0.7288 -2.0553 34 1 3.9421 4.3637 -2.0851 35 1 2.2023 4.6752 -1.8724 36 1 3.1835 4.1267 -0.4925 37 1 0.0222 4.5185 -3.6895 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382193808.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:41 Heat of formation + Delta-G solvation = -31.325885 kcal Electronic energy + Delta-G solvation = -19338.497430 eV Core-core repulsion = 16592.781046 eV Total energy + Delta-G solvation = -2745.716385 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.07092 -38.21373 -35.25787 -33.70660 -32.84787 -31.10848 -29.70665 -27.40377 -26.44955 -24.75529 -23.56523 -21.28015 -21.22882 -19.27077 -18.40488 -18.33942 -16.81674 -16.52275 -16.16568 -15.50968 -15.06732 -14.65101 -14.27983 -14.07148 -13.91032 -13.76295 -13.45401 -13.16002 -13.04320 -12.94385 -12.81079 -12.50279 -12.41591 -12.28229 -12.08218 -11.94442 -11.84492 -11.73012 -11.30218 -11.02689 -10.81519 -10.51315 -9.71749 -9.56335 -9.09892 -7.99512 -6.22292 0.19630 0.89338 1.13303 1.41606 1.43254 1.51928 1.93943 2.44923 3.11512 3.61856 3.91615 4.04506 4.11802 4.27484 4.39567 4.51380 4.58888 4.62654 4.70916 4.82659 4.89921 4.97539 5.00887 5.04119 5.07313 5.16046 5.20739 5.24845 5.32314 5.48518 5.50848 5.53884 5.60733 5.70723 5.81113 6.20229 6.40950 6.73123 7.24148 7.52723 9.00099 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.006820 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.780082 B = 4104.701660 C = 4234.077946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.145 3.855 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.225 4.225 7 S 0.107 5.893 8 C -0.218 4.218 9 C -0.134 4.134 10 C -0.139 4.139 11 C 0.221 3.779 12 C -0.135 4.135 13 C -0.541 4.541 14 H 0.055 0.945 15 C 0.035 3.965 16 N -0.885 5.885 17 Si 0.945 3.055 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.267 1.267 21 O -0.362 6.362 22 H 0.031 0.969 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.114 0.886 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -4.579 12.189 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C 0.102 3.898 4 C -0.110 4.110 5 C -0.150 4.150 6 C -0.359 4.359 7 S 0.370 5.630 8 C -0.353 4.353 9 C -0.172 4.172 10 C -0.177 4.177 11 C 0.183 3.817 12 C -0.193 4.193 13 C -0.579 4.579 14 H 0.073 0.927 15 C -0.167 4.167 16 N -0.523 5.523 17 Si 0.771 3.229 18 H -0.207 1.207 19 H -0.210 1.210 20 H -0.191 1.191 21 O -0.282 6.282 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.194 0.806 29 H 0.198 0.802 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.040 0.960 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.222 -3.991 13.654 14.398 hybrid contribution -0.567 -0.098 -2.772 2.831 sum 1.655 -4.089 10.883 11.743 Atomic orbital electron populations 1.21601 0.95960 1.00953 1.00919 1.21722 0.96639 0.94524 1.01824 1.20698 0.92979 0.91519 0.84563 1.19280 0.95287 1.00453 0.95975 1.20030 0.97824 0.99313 0.97874 1.25772 1.04806 1.08446 0.96916 1.83681 1.13203 1.50967 1.15178 1.25588 1.05396 1.07957 0.96316 1.23181 0.94305 1.02913 0.96761 1.23203 0.99276 0.99924 0.95251 1.19909 0.82273 0.89709 0.89785 1.21942 1.00276 1.00554 0.96535 1.21379 1.17846 1.25662 0.93020 0.92674 1.25681 0.95401 0.94277 1.01343 1.70090 1.19720 1.26168 1.36277 0.85781 0.78454 0.77271 0.81395 1.20675 1.20963 1.19098 1.88808 1.32899 1.73654 1.32831 0.94998 0.92909 0.91873 0.89744 0.92499 0.86829 0.80610 0.80152 0.90807 0.88619 0.91106 0.92092 0.94791 0.92155 0.96047 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.27 71.98 0.67 -4.01 16 2 C -0.11 -3.66 5.06 30.59 0.15 -3.51 16 3 C 0.15 5.49 0.80 -11.07 -0.01 5.48 16 4 C -0.10 -3.40 4.08 -20.92 -0.09 -3.49 16 5 C -0.12 -4.41 7.86 21.22 0.17 -4.25 16 6 C -0.22 -6.71 11.23 66.72 0.75 -5.96 16 7 S 0.11 2.70 23.34 -56.49 -1.32 1.38 16 8 C -0.22 -6.20 9.85 66.72 0.66 -5.54 16 9 C -0.13 -4.47 4.92 31.86 0.16 -4.32 16 10 C -0.14 -5.56 6.01 32.05 0.19 -5.36 16 11 C 0.22 10.90 0.73 -10.87 -0.01 10.89 16 12 C -0.14 -6.71 8.62 71.98 0.62 -6.09 16 13 C -0.54 -29.83 8.30 25.60 0.21 -29.62 16 14 H 0.06 2.99 7.76 -2.91 -0.02 2.97 16 15 C 0.04 1.97 5.28 84.65 0.45 2.41 16 16 N -0.89 -51.39 10.97 21.45 0.24 -51.16 16 17 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 O -0.36 -17.86 8.52 -148.98 -1.27 -19.13 16 22 H 0.03 1.29 7.74 -2.39 -0.02 1.28 16 23 H 0.05 1.75 6.22 -2.39 -0.01 1.73 16 24 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.11 4.91 7.86 -2.91 -0.02 4.89 16 28 H 0.18 4.39 8.06 -2.90 -0.02 4.37 16 29 H 0.18 4.19 7.35 -2.91 -0.02 4.17 16 30 H 0.07 2.37 6.70 -2.39 -0.02 2.35 16 31 H 0.10 2.56 7.82 -2.39 -0.02 2.54 16 32 H 0.07 2.64 8.03 -2.38 -0.02 2.62 16 33 H 0.06 2.43 8.04 -2.39 -0.02 2.42 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 3.38 5.93 -2.39 -0.01 3.37 16 36 H 0.02 0.96 7.53 -2.39 -0.02 0.94 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -61.92 305.60 4.64 -57.28 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 1.04 Total: 19.06 kcal Atomic # 6 Polarization: -57.27 SS G_CDS: 3.92 Total: -53.35 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.24 Total: -51.16 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -1.27 Total: -19.13 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.32 Total: 1.38 kcal Total: -61.92 4.64 -57.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382193808.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.957 kcal (2) G-P(sol) polarization free energy of solvation -61.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds