Wall clock time and date at job start Mon Mar 30 2020 07:17:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35955 * 116.99754 * 2 1
4 4 C 1.38666 * 120.06003 * 359.97438 * 3 2 1
5 5 C 1.38179 * 119.96651 * 179.97438 * 4 3 2
6 6 C 1.38269 * 120.09749 * 0.03161 * 5 4 3
7 7 C 1.50692 * 119.93697 * 179.97438 * 6 5 4
8 8 H 1.09000 * 110.55390 * 27.88050 * 7 6 5
9 9 C 1.54992 * 110.62062 * 264.99644 * 7 6 5
10 10 C 1.54808 * 102.09663 * 204.47557 * 9 7 6
11 11 C 1.54103 * 104.18578 * 20.88343 * 10 9 7
12 12 H 1.09002 * 109.87915 * 242.60324 * 11 10 9
13 13 C 1.50698 * 109.87783 * 121.60033 * 11 10 9
14 14 H 1.07999 * 120.00087 * 0.31105 * 13 11 10
15 15 C 1.37883 * 119.99913 * 180.30135 * 13 11 10
16 16 N 1.31512 * 119.99645 * 0.02562 * 15 13 11
17 17 Si 1.86798 * 120.00110 * 179.97438 * 15 13 11
18 18 H 1.48501 * 109.46824 * 60.00398 * 17 15 13
19 19 H 1.48496 * 109.47036 * 180.02562 * 17 15 13
20 20 H 1.48504 * 109.47287 * 300.00839 * 17 15 13
21 21 O 1.43750 * 107.41924 * 2.10301 * 11 10 9
22 22 C 1.38258 * 120.12317 * 0.24936 * 6 5 4
23 23 C 1.38335 * 120.02912 * 359.44876 * 22 6 5
24 24 F 1.35098 * 120.04935 * 180.27918 * 23 22 6
25 25 H 1.09002 * 109.47567 * 299.99724 * 1 2 3
26 26 H 1.09004 * 109.47505 * 60.00416 * 1 2 3
27 27 H 1.09003 * 109.46982 * 180.02562 * 1 2 3
28 28 H 1.07998 * 120.01748 * 0.02562 * 4 3 2
29 29 H 1.08004 * 119.95183 * 180.02562 * 5 4 3
30 30 H 1.09007 * 110.90687 * 86.27698 * 9 7 6
31 31 H 1.09000 * 110.91017 * 322.67922 * 9 7 6
32 32 H 1.08992 * 110.49201 * 262.20655 * 10 9 7
33 33 H 1.09007 * 110.48703 * 139.55607 * 10 9 7
34 34 H 0.97004 * 119.99535 * 179.97438 * 16 15 13
35 35 H 1.07994 * 119.98171 * 179.72873 * 22 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2114 0.0000
4 6 1.2921 2.3751 -0.0005
5 6 1.9214 3.6053 0.0000
6 6 3.3022 3.6778 0.0004
7 6 3.9847 5.0213 0.0004
8 1 3.3536 5.7712 0.4774
9 6 4.3452 5.4504 -1.4446
10 6 5.5237 6.4262 -1.2089
11 6 6.0500 6.0516 0.1902
12 1 5.9343 6.8971 0.8684
13 6 7.5025 5.6596 0.1033
14 1 8.0106 5.6778 -0.8495
15 6 8.1828 5.2780 1.2403
16 7 7.5639 5.2556 2.4005
17 14 9.9831 4.7915 1.1325
18 1 10.7739 5.9336 0.6077
19 1 10.4785 4.4251 2.4835
20 1 10.1279 3.6286 0.2203
21 8 5.2706 4.9385 0.6594
22 6 4.0578 2.5200 -0.0049
23 6 3.4333 1.2857 0.0008
24 9 4.1713 0.1541 0.0013
25 1 -0.3634 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 0.2136 2.3200 -0.0005
29 1 1.3339 4.5115 0.0000
30 1 3.5069 5.9605 -1.9195
31 1 4.6629 4.5927 -2.0374
32 1 5.1730 7.4580 -1.2209
33 1 6.2989 6.2768 -1.9606
34 1 8.0424 4.9868 3.2003
35 1 5.1361 2.5793 -0.0090
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383383445.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:17:31
Heat of formation + Delta-G solvation = -104.363040 kcal
Electronic energy + Delta-G solvation = -20068.727606 eV
Core-core repulsion = 16753.630916 eV
Total energy + Delta-G solvation = -3315.096689 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 266.110 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-48.45937 -39.95782 -38.50275 -36.85187 -32.68670 -31.04405 -30.71630 -30.46226
-28.12882 -27.00831 -24.44605 -22.60635 -22.25581 -20.42423 -19.96422 -18.20962
-17.05361 -16.70796 -16.26754 -16.04594 -15.12513 -14.87095 -14.72410 -14.44606
-14.31128 -14.04367 -13.79717 -12.90680 -12.83220 -12.39871 -12.26120 -12.13510
-11.79135 -11.56271 -11.23302 -10.99625 -10.89216 -10.64200 -10.44855 -10.30996
-10.06264 -9.81447 -9.18521 -8.67157 -8.57065 -8.10544 -7.84281 -6.00186
-4.13562 1.35853 1.44247 3.16536 3.33407 3.38695 3.40608 3.75549
4.42485 4.43257 4.74128 4.86445 4.96951 5.00602 5.15086 5.28840
5.34260 5.44732 5.57271 5.59398 5.72280 5.86678 5.99289 6.06166
6.22692 6.29355 6.30790 6.49227 6.63018 6.70417 6.76601 6.88503
6.97930 7.36708 7.53316 7.88517 8.23071 8.50134 8.98868 9.57443
11.07002
Molecular weight = 266.11amu
Principal moments of inertia in cm(-1)
A = 0.024319 B = 0.005381 C = 0.004705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1151.105965 B = 5202.644627 C = 5949.736742
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.314 6.314
3 C 0.081 3.919
4 C -0.186 4.186
5 C -0.089 4.089
6 C -0.069 4.069
7 C 0.103 3.897
8 H 0.063 0.937
9 C -0.140 4.140
10 C -0.146 4.146
11 C 0.203 3.797
12 H 0.027 0.973
13 C -0.535 4.535
14 H 0.062 0.938
15 C 0.078 3.922
16 N -0.862 5.862
17 Si 0.890 3.110
18 H -0.276 1.276
19 H -0.286 1.286
20 H -0.275 1.275
21 O -0.343 6.343
22 C -0.083 4.083
23 C 0.066 3.934
24 F -0.136 7.136
25 H 0.055 0.945
26 H 0.055 0.945
27 H 0.098 0.902
28 H 0.134 0.866
29 H 0.129 0.871
30 H 0.061 0.939
31 H 0.068 0.932
32 H 0.051 0.949
33 H 0.068 0.932
34 H 0.262 0.738
35 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.548 -4.795 -5.514 16.280
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.228 6.228
3 C 0.036 3.964
4 C -0.205 4.205
5 C -0.108 4.108
6 C -0.070 4.070
7 C 0.044 3.956
8 H 0.081 0.919
9 C -0.178 4.178
10 C -0.184 4.184
11 C 0.148 3.852
12 H 0.045 0.955
13 C -0.573 4.573
14 H 0.080 0.920
15 C -0.128 4.128
16 N -0.498 5.498
17 Si 0.717 3.283
18 H -0.201 1.201
19 H -0.212 1.212
20 H -0.200 1.200
21 O -0.262 6.262
22 C -0.102 4.102
23 C 0.046 3.954
24 F -0.114 7.114
25 H 0.074 0.926
26 H 0.073 0.927
27 H 0.116 0.884
28 H 0.151 0.849
29 H 0.147 0.853
30 H 0.080 0.920
31 H 0.087 0.913
32 H 0.070 0.930
33 H 0.087 0.913
34 H 0.072 0.928
35 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -14.345 -5.222 -5.159 16.114
hybrid contribution 0.725 -0.223 -0.079 0.763
sum -13.620 -5.446 -5.238 15.576
Atomic orbital electron populations
1.23044 0.78519 1.03792 1.01322 1.86115 1.21253 1.26199 1.89197
1.18958 0.90758 0.85352 1.01351 1.20954 0.99712 0.91392 1.08422
1.20788 0.93778 0.97137 0.99050 1.19682 0.92677 0.95059 0.99568
1.21786 0.90021 0.91099 0.92732 0.91902 1.23070 0.98251 0.99748
0.96699 1.23068 0.96785 0.97308 1.01224 1.20302 0.90721 0.86311
0.87900 0.95499 1.21144 0.93340 1.48595 0.94192 0.91977 1.25077
0.98039 0.94272 0.95395 1.70023 1.36244 1.44971 0.98576 0.86710
0.85116 0.79165 0.77299 1.20116 1.21168 1.20032 1.89397 1.20652
1.50501 1.65661 1.21114 1.02591 0.88994 0.97468 1.17038 0.85728
0.83119 1.09508 1.91476 1.76557 1.49025 1.94369 0.92621 0.92668
0.88351 0.84875 0.85260 0.92014 0.91281 0.92985 0.91317 0.92838
0.82636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 9.81 101.05 0.99 1.24 16
2 O -0.31 -4.45 10.36 -19.60 -0.20 -4.66 16
3 C 0.08 1.26 6.69 -39.18 -0.26 1.00 16
4 C -0.19 -2.44 9.04 -39.44 -0.36 -2.79 16
5 C -0.09 -1.26 9.70 -39.59 -0.38 -1.64 16
6 C -0.07 -1.22 5.09 -104.61 -0.53 -1.75 16
7 C 0.10 1.99 3.55 -26.83 -0.10 1.89 16
8 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16
9 C -0.14 -2.47 6.57 -24.73 -0.16 -2.63 16
10 C -0.15 -2.94 6.63 -25.20 -0.17 -3.11 16
11 C 0.20 5.15 3.24 -27.31 -0.09 5.06 16
12 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16
13 C -0.54 -14.87 8.78 -34.44 -0.30 -15.18 16
14 H 0.06 1.67 7.33 -52.49 -0.38 1.29 16
15 C 0.08 2.21 5.41 -17.82 -0.10 2.12 16
16 N -0.86 -25.63 12.93 55.43 0.72 -24.91 16
17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16
18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
21 O -0.34 -8.68 9.46 -35.23 -0.33 -9.01 16
22 C -0.08 -1.58 9.35 -39.54 -0.37 -1.95 16
23 C 0.07 1.18 7.31 -39.30 -0.29 0.90 16
24 F -0.14 -2.56 17.11 2.25 0.04 -2.53 16
25 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16
26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16
27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
28 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16
29 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16
30 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16
31 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16
32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.07 1.38 7.40 -51.92 -0.38 1.00 16
34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
35 H 0.16 3.30 7.51 -52.49 -0.39 2.91 16
LS Contribution 300.86 15.07 4.53 4.53
Total: -1.00 -31.59 300.86 -6.76 -38.35
By element:
Atomic # 1 Polarization: 3.02 SS G_CDS: -4.38 Total: -1.36 kcal
Atomic # 6 Polarization: -14.74 SS G_CDS: -2.11 Total: -16.85 kcal
Atomic # 7 Polarization: -25.63 SS G_CDS: 0.72 Total: -24.91 kcal
Atomic # 8 Polarization: -13.13 SS G_CDS: -0.54 Total: -13.67 kcal
Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -31.59 -6.76 -38.35 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383383445.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.011 kcal
(2) G-P(sol) polarization free energy of solvation -31.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.605 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds