Wall clock time and date at job start Mon Mar 30 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35955 * 116.99754 * 2 1 4 4 C 1.38666 * 120.06003 * 359.97438 * 3 2 1 5 5 C 1.38179 * 119.96651 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.09749 * 0.03161 * 5 4 3 7 7 C 1.50692 * 119.93697 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.55390 * 27.88050 * 7 6 5 9 9 C 1.54992 * 110.62062 * 264.99644 * 7 6 5 10 10 C 1.54808 * 102.09663 * 204.47557 * 9 7 6 11 11 C 1.54103 * 104.18578 * 20.88343 * 10 9 7 12 12 H 1.09002 * 109.87915 * 242.60324 * 11 10 9 13 13 C 1.50698 * 109.87783 * 121.60033 * 11 10 9 14 14 H 1.07999 * 120.00087 * 0.31105 * 13 11 10 15 15 C 1.37883 * 119.99913 * 180.30135 * 13 11 10 16 16 N 1.31512 * 119.99645 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00110 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46824 * 60.00398 * 17 15 13 19 19 H 1.48496 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47287 * 300.00839 * 17 15 13 21 21 O 1.43750 * 107.41924 * 2.10301 * 11 10 9 22 22 C 1.38258 * 120.12317 * 0.24936 * 6 5 4 23 23 C 1.38335 * 120.02912 * 359.44876 * 22 6 5 24 24 F 1.35098 * 120.04935 * 180.27918 * 23 22 6 25 25 H 1.09002 * 109.47567 * 299.99724 * 1 2 3 26 26 H 1.09004 * 109.47505 * 60.00416 * 1 2 3 27 27 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.01748 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.95183 * 180.02562 * 5 4 3 30 30 H 1.09007 * 110.90687 * 86.27698 * 9 7 6 31 31 H 1.09000 * 110.91017 * 322.67922 * 9 7 6 32 32 H 1.08992 * 110.49201 * 262.20655 * 10 9 7 33 33 H 1.09007 * 110.48703 * 139.55607 * 10 9 7 34 34 H 0.97004 * 119.99535 * 179.97438 * 16 15 13 35 35 H 1.07994 * 119.98171 * 179.72873 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2921 2.3751 -0.0005 5 6 1.9214 3.6053 0.0000 6 6 3.3022 3.6778 0.0004 7 6 3.9847 5.0213 0.0004 8 1 3.3536 5.7712 0.4774 9 6 4.3452 5.4504 -1.4446 10 6 5.5237 6.4262 -1.2089 11 6 6.0500 6.0516 0.1902 12 1 5.9343 6.8971 0.8684 13 6 7.5025 5.6596 0.1033 14 1 8.0106 5.6778 -0.8495 15 6 8.1828 5.2780 1.2403 16 7 7.5639 5.2556 2.4005 17 14 9.9831 4.7915 1.1325 18 1 10.7739 5.9336 0.6077 19 1 10.4785 4.4251 2.4835 20 1 10.1279 3.6286 0.2203 21 8 5.2706 4.9385 0.6594 22 6 4.0578 2.5200 -0.0049 23 6 3.4333 1.2857 0.0008 24 9 4.1713 0.1541 0.0013 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2136 2.3200 -0.0005 29 1 1.3339 4.5115 0.0000 30 1 3.5069 5.9605 -1.9195 31 1 4.6629 4.5927 -2.0374 32 1 5.1730 7.4580 -1.2209 33 1 6.2989 6.2768 -1.9606 34 1 8.0424 4.9868 3.2003 35 1 5.1361 2.5793 -0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383383445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:31 Heat of formation + Delta-G solvation = -104.363040 kcal Electronic energy + Delta-G solvation = -20068.727606 eV Core-core repulsion = 16753.630916 eV Total energy + Delta-G solvation = -3315.096689 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.45937 -39.95782 -38.50275 -36.85187 -32.68670 -31.04405 -30.71630 -30.46226 -28.12882 -27.00831 -24.44605 -22.60635 -22.25581 -20.42423 -19.96422 -18.20962 -17.05361 -16.70796 -16.26754 -16.04594 -15.12513 -14.87095 -14.72410 -14.44606 -14.31128 -14.04367 -13.79717 -12.90680 -12.83220 -12.39871 -12.26120 -12.13510 -11.79135 -11.56271 -11.23302 -10.99625 -10.89216 -10.64200 -10.44855 -10.30996 -10.06264 -9.81447 -9.18521 -8.67157 -8.57065 -8.10544 -7.84281 -6.00186 -4.13562 1.35853 1.44247 3.16536 3.33407 3.38695 3.40608 3.75549 4.42485 4.43257 4.74128 4.86445 4.96951 5.00602 5.15086 5.28840 5.34260 5.44732 5.57271 5.59398 5.72280 5.86678 5.99289 6.06166 6.22692 6.29355 6.30790 6.49227 6.63018 6.70417 6.76601 6.88503 6.97930 7.36708 7.53316 7.88517 8.23071 8.50134 8.98868 9.57443 11.07002 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.005381 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.105965 B = 5202.644627 C = 5949.736742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.081 3.919 4 C -0.186 4.186 5 C -0.089 4.089 6 C -0.069 4.069 7 C 0.103 3.897 8 H 0.063 0.937 9 C -0.140 4.140 10 C -0.146 4.146 11 C 0.203 3.797 12 H 0.027 0.973 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.078 3.922 16 N -0.862 5.862 17 Si 0.890 3.110 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.343 6.343 22 C -0.083 4.083 23 C 0.066 3.934 24 F -0.136 7.136 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.262 0.738 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 -4.795 -5.514 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.036 3.964 4 C -0.205 4.205 5 C -0.108 4.108 6 C -0.070 4.070 7 C 0.044 3.956 8 H 0.081 0.919 9 C -0.178 4.178 10 C -0.184 4.184 11 C 0.148 3.852 12 H 0.045 0.955 13 C -0.573 4.573 14 H 0.080 0.920 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.717 3.283 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 O -0.262 6.262 22 C -0.102 4.102 23 C 0.046 3.954 24 F -0.114 7.114 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.345 -5.222 -5.159 16.114 hybrid contribution 0.725 -0.223 -0.079 0.763 sum -13.620 -5.446 -5.238 15.576 Atomic orbital electron populations 1.23044 0.78519 1.03792 1.01322 1.86115 1.21253 1.26199 1.89197 1.18958 0.90758 0.85352 1.01351 1.20954 0.99712 0.91392 1.08422 1.20788 0.93778 0.97137 0.99050 1.19682 0.92677 0.95059 0.99568 1.21786 0.90021 0.91099 0.92732 0.91902 1.23070 0.98251 0.99748 0.96699 1.23068 0.96785 0.97308 1.01224 1.20302 0.90721 0.86311 0.87900 0.95499 1.21144 0.93340 1.48595 0.94192 0.91977 1.25077 0.98039 0.94272 0.95395 1.70023 1.36244 1.44971 0.98576 0.86710 0.85116 0.79165 0.77299 1.20116 1.21168 1.20032 1.89397 1.20652 1.50501 1.65661 1.21114 1.02591 0.88994 0.97468 1.17038 0.85728 0.83119 1.09508 1.91476 1.76557 1.49025 1.94369 0.92621 0.92668 0.88351 0.84875 0.85260 0.92014 0.91281 0.92985 0.91317 0.92838 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.45 10.36 -19.60 -0.20 -4.66 16 3 C 0.08 1.26 6.69 -39.18 -0.26 1.00 16 4 C -0.19 -2.44 9.04 -39.44 -0.36 -2.79 16 5 C -0.09 -1.26 9.70 -39.59 -0.38 -1.64 16 6 C -0.07 -1.22 5.09 -104.61 -0.53 -1.75 16 7 C 0.10 1.99 3.55 -26.83 -0.10 1.89 16 8 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 9 C -0.14 -2.47 6.57 -24.73 -0.16 -2.63 16 10 C -0.15 -2.94 6.63 -25.20 -0.17 -3.11 16 11 C 0.20 5.15 3.24 -27.31 -0.09 5.06 16 12 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.54 -14.87 8.78 -34.44 -0.30 -15.18 16 14 H 0.06 1.67 7.33 -52.49 -0.38 1.29 16 15 C 0.08 2.21 5.41 -17.82 -0.10 2.12 16 16 N -0.86 -25.63 12.93 55.43 0.72 -24.91 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 O -0.34 -8.68 9.46 -35.23 -0.33 -9.01 16 22 C -0.08 -1.58 9.35 -39.54 -0.37 -1.95 16 23 C 0.07 1.18 7.31 -39.30 -0.29 0.90 16 24 F -0.14 -2.56 17.11 2.25 0.04 -2.53 16 25 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 29 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 31 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.38 7.40 -51.92 -0.38 1.00 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.16 3.30 7.51 -52.49 -0.39 2.91 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -31.59 300.86 -6.76 -38.35 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -4.38 Total: -1.36 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.11 Total: -16.85 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.72 Total: -24.91 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.54 Total: -13.67 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.59 -6.76 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383383445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.011 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds