Wall clock time and date at job start Mon Mar 30 2020 07:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35955 * 116.99754 * 2 1 4 4 C 1.38666 * 120.06003 * 359.97438 * 3 2 1 5 5 C 1.38179 * 119.96651 * 179.97438 * 4 3 2 6 6 C 1.38269 * 120.09749 * 0.03161 * 5 4 3 7 7 C 1.50692 * 119.93697 * 179.97438 * 6 5 4 8 8 H 1.09000 * 110.55390 * 27.88050 * 7 6 5 9 9 C 1.54992 * 110.62062 * 264.99644 * 7 6 5 10 10 C 1.54808 * 102.09663 * 204.47557 * 9 7 6 11 11 C 1.54103 * 104.18578 * 20.88343 * 10 9 7 12 12 H 1.09002 * 109.87915 * 242.60324 * 11 10 9 13 13 C 1.50698 * 109.87783 * 121.60033 * 11 10 9 14 14 H 1.07999 * 120.00087 * 0.31105 * 13 11 10 15 15 C 1.37883 * 119.99913 * 180.30135 * 13 11 10 16 16 N 1.31512 * 119.99645 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00110 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46824 * 60.00398 * 17 15 13 19 19 H 1.48496 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47287 * 300.00839 * 17 15 13 21 21 O 1.43750 * 107.41924 * 2.10301 * 11 10 9 22 22 C 1.38258 * 120.12317 * 0.24936 * 6 5 4 23 23 C 1.38335 * 120.02912 * 359.44876 * 22 6 5 24 24 F 1.35098 * 120.04935 * 180.27918 * 23 22 6 25 25 H 1.09002 * 109.47567 * 299.99724 * 1 2 3 26 26 H 1.09004 * 109.47505 * 60.00416 * 1 2 3 27 27 H 1.09003 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.01748 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.95183 * 180.02562 * 5 4 3 30 30 H 1.09007 * 110.90687 * 86.27698 * 9 7 6 31 31 H 1.09000 * 110.91017 * 322.67922 * 9 7 6 32 32 H 1.08992 * 110.49201 * 262.20655 * 10 9 7 33 33 H 1.09007 * 110.48703 * 139.55607 * 10 9 7 34 34 H 0.97004 * 119.99535 * 179.97438 * 16 15 13 35 35 H 1.07994 * 119.98171 * 179.72873 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2921 2.3751 -0.0005 5 6 1.9214 3.6053 0.0000 6 6 3.3022 3.6778 0.0004 7 6 3.9847 5.0213 0.0004 8 1 3.3536 5.7712 0.4774 9 6 4.3452 5.4504 -1.4446 10 6 5.5237 6.4262 -1.2089 11 6 6.0500 6.0516 0.1902 12 1 5.9343 6.8971 0.8684 13 6 7.5025 5.6596 0.1033 14 1 8.0106 5.6778 -0.8495 15 6 8.1828 5.2780 1.2403 16 7 7.5639 5.2556 2.4005 17 14 9.9831 4.7915 1.1325 18 1 10.7739 5.9336 0.6077 19 1 10.4785 4.4251 2.4835 20 1 10.1279 3.6286 0.2203 21 8 5.2706 4.9385 0.6594 22 6 4.0578 2.5200 -0.0049 23 6 3.4333 1.2857 0.0008 24 9 4.1713 0.1541 0.0013 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2136 2.3200 -0.0005 29 1 1.3339 4.5115 0.0000 30 1 3.5069 5.9605 -1.9195 31 1 4.6629 4.5927 -2.0374 32 1 5.1730 7.4580 -1.2209 33 1 6.2989 6.2768 -1.9606 34 1 8.0424 4.9868 3.2003 35 1 5.1361 2.5793 -0.0090 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383383445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:31 Heat of formation + Delta-G solvation = -124.283992 kcal Electronic energy + Delta-G solvation = -20069.591443 eV Core-core repulsion = 16753.630916 eV Total energy + Delta-G solvation = -3315.960527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.85809 -41.13464 -39.98185 -38.18300 -34.73742 -32.66815 -32.20539 -31.69974 -29.52310 -28.17911 -26.18269 -23.93413 -23.64223 -21.96352 -21.58039 -19.33769 -18.90088 -17.94769 -17.79686 -17.15088 -16.81254 -16.33486 -16.05217 -15.98280 -15.66876 -15.64441 -15.11518 -14.51469 -14.27034 -13.79010 -13.72935 -13.47212 -13.21310 -12.83997 -12.81534 -12.51602 -12.33157 -12.13937 -12.10015 -11.89396 -11.64791 -11.46465 -11.04042 -10.69600 -10.01214 -9.90848 -9.09905 -8.15313 -6.35252 0.12191 0.20705 1.38403 1.41626 1.48635 2.19790 2.39683 2.51018 3.05877 3.21199 3.54559 3.71060 3.85129 4.03653 4.10299 4.23478 4.34109 4.40896 4.43749 4.55003 4.56742 4.63688 4.75451 4.80522 4.96097 5.03409 5.05845 5.15226 5.16813 5.28664 5.52087 5.61738 5.66020 5.74242 6.18962 6.31216 6.55075 6.98649 7.40484 8.92240 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.005381 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.105965 B = 5202.644627 C = 5949.736742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.089 3.911 4 C -0.168 4.168 5 C -0.071 4.071 6 C -0.088 4.088 7 C 0.095 3.905 8 H 0.080 0.920 9 C -0.126 4.126 10 C -0.139 4.139 11 C 0.195 3.805 12 H -0.006 1.006 13 C -0.555 4.555 14 H 0.063 0.937 15 C 0.024 3.976 16 N -0.902 5.902 17 Si 0.955 3.045 18 H -0.261 1.261 19 H -0.284 1.284 20 H -0.273 1.273 21 O -0.382 6.382 22 C -0.105 4.105 23 C 0.034 3.966 24 F -0.152 7.152 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.181 0.819 29 H 0.170 0.830 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.261 0.739 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 -4.616 -6.720 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.250 6.250 3 C 0.043 3.957 4 C -0.186 4.186 5 C -0.088 4.088 6 C -0.089 4.089 7 C 0.037 3.963 8 H 0.098 0.902 9 C -0.164 4.164 10 C -0.177 4.177 11 C 0.139 3.861 12 H 0.012 0.988 13 C -0.593 4.593 14 H 0.082 0.918 15 C -0.178 4.178 16 N -0.539 5.539 17 Si 0.780 3.220 18 H -0.185 1.185 19 H -0.209 1.209 20 H -0.199 1.199 21 O -0.302 6.302 22 C -0.124 4.124 23 C 0.014 3.986 24 F -0.131 7.131 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.137 0.863 28 H 0.198 0.802 29 H 0.187 0.813 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.287 -5.043 -6.384 19.106 hybrid contribution 1.463 -0.329 0.292 1.528 sum -15.824 -5.371 -6.092 17.787 Atomic orbital electron populations 1.23483 0.75408 1.05965 1.03050 1.86107 1.24425 1.25684 1.88764 1.19040 0.89782 0.86934 0.99946 1.21432 1.01748 0.89727 1.05689 1.21169 0.92076 0.99233 0.96369 1.19656 0.94314 0.93308 1.01615 1.22079 0.87998 0.92846 0.93372 0.90220 1.23023 0.98514 0.99039 0.95814 1.22953 0.97698 0.99404 0.97655 1.20202 0.90336 0.85377 0.90183 0.98804 1.21620 0.95329 1.48048 0.94262 0.91838 1.25924 1.02522 0.94322 0.95062 1.70164 1.37977 1.46560 0.99217 0.85674 0.79957 0.79104 0.77284 1.18543 1.20898 1.19877 1.89306 1.23585 1.50237 1.67051 1.20821 1.00864 0.90671 1.00072 1.17249 0.87269 0.82246 1.11842 1.91416 1.77259 1.49665 1.94745 0.90978 0.90602 0.86299 0.80172 0.81274 0.87540 0.92077 0.90500 0.91766 0.93064 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -8.75 10.36 -93.05 -0.96 -9.71 16 3 C 0.09 2.59 6.69 22.53 0.15 2.74 16 4 C -0.17 -3.66 9.04 22.36 0.20 -3.46 16 5 C -0.07 -1.72 9.70 22.26 0.22 -1.51 16 6 C -0.09 -3.05 5.09 -19.85 -0.10 -3.15 16 7 C 0.10 3.63 3.55 30.53 0.11 3.74 16 8 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 9 C -0.13 -4.24 6.57 31.89 0.21 -4.03 16 10 C -0.14 -5.54 6.63 31.58 0.21 -5.33 16 11 C 0.19 10.22 3.24 30.22 0.10 10.32 16 12 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 13 C -0.56 -31.99 8.78 25.60 0.22 -31.77 16 14 H 0.06 3.51 7.33 -2.91 -0.02 3.49 16 15 C 0.02 1.39 5.41 84.66 0.46 1.85 16 16 N -0.90 -56.01 12.93 21.45 0.28 -55.73 16 17 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 21 O -0.38 -20.16 9.46 -148.98 -1.41 -21.57 16 22 C -0.11 -4.20 9.35 22.30 0.21 -3.99 16 23 C 0.03 1.24 7.31 22.45 0.16 1.40 16 24 F -0.15 -6.08 17.11 44.97 0.77 -5.31 16 25 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 26 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16 27 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.18 2.25 6.30 -2.91 -0.02 2.23 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.11 2.64 8.14 -2.38 -0.02 2.62 16 31 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 32 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.06 2.58 7.40 -2.38 -0.02 2.56 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.11 5.37 7.51 -2.91 -0.02 5.35 16 Total: -1.00 -74.19 300.86 5.06 -69.14 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.09 Total: 7.66 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 3.26 Total: -31.87 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.28 Total: -55.73 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -2.37 Total: -31.28 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.77 Total: -5.31 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.19 5.06 -69.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383383445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.147 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds