Wall clock time and date at job start Mon Mar 30 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 H 1.09005 * 109.47434 * 305.00082 * 3 2 1 5 5 C 1.50702 * 109.47361 * 184.99884 * 3 2 1 6 6 H 1.07998 * 119.99951 * 240.00471 * 5 3 2 7 7 C 1.37877 * 120.00157 * 59.99874 * 5 3 2 8 8 N 1.31519 * 119.99485 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47564 * 60.00141 * 9 7 5 11 11 H 1.48506 * 109.47143 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47416 * 299.99810 * 9 7 5 13 13 C 1.50703 * 109.47044 * 64.99828 * 3 2 1 14 14 O 1.21298 * 119.99946 * 95.00317 * 13 3 2 15 15 C 1.46788 * 119.99988 * 275.00065 * 13 3 2 16 16 C 1.40035 * 120.21123 * 359.97438 * 15 13 3 17 17 C 1.37869 * 119.85211 * 179.72550 * 16 15 13 18 18 F 1.35104 * 119.85486 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.28947 * 0.02562 * 17 16 15 20 20 C 1.38053 * 120.42853 * 359.97438 * 19 17 16 21 21 C 1.38666 * 120.14277 * 0.04700 * 20 19 17 22 22 O 1.35633 * 120.14644 * 180.02562 * 21 20 19 23 23 C 1.42901 * 117.00012 * 359.95000 * 22 21 20 24 24 H 1.08993 * 109.47667 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47555 * 300.00641 * 1 2 3 26 26 H 1.09005 * 109.47225 * 59.99887 * 1 2 3 27 27 H 1.09000 * 109.47123 * 240.00167 * 2 1 3 28 28 H 1.09004 * 109.46852 * 119.99720 * 2 1 3 29 29 H 0.97003 * 119.99756 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.06850 * 359.69963 * 16 15 13 31 31 H 1.08001 * 119.78296 * 179.97438 * 19 17 16 32 32 H 1.07999 * 119.92530 * 180.02562 * 20 19 17 33 33 H 1.09005 * 109.47125 * 180.02562 * 23 22 21 34 34 H 1.08998 * 109.46915 * 299.99713 * 23 22 21 35 35 H 1.08997 * 109.47048 * 60.00427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5967 0.1452 -0.2342 11 1 6.3979 0.2167 -2.6502 12 1 6.5005 2.2799 -1.3807 13 6 1.6413 2.1163 1.2877 14 8 2.4160 2.1484 2.2205 15 6 0.3155 2.7337 1.4131 16 6 -0.5821 2.6997 0.3388 17 6 -1.8275 3.2770 0.4665 18 9 -2.6934 3.2447 -0.5701 19 6 -2.1954 3.8923 1.6552 20 6 -1.3198 3.9326 2.7218 21 6 -0.0626 3.3580 2.6127 22 8 0.7975 3.3971 3.6607 23 6 0.3432 4.0483 4.8488 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8901 29 1 3.8293 -0.0610 -2.9499 30 1 -0.2991 2.2227 -0.5879 31 1 -3.1730 4.3423 1.7462 32 1 -1.6147 4.4130 3.6430 33 1 1.1258 4.0089 5.6066 34 1 0.1066 5.0885 4.6252 35 1 -0.5489 3.5445 5.2208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383599541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:34 Heat of formation + Delta-G solvation = -94.623036 kcal Electronic energy + Delta-G solvation = -20511.624480 eV Core-core repulsion = 17196.950148 eV Total energy + Delta-G solvation = -3314.674331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.64826 -40.27965 -38.19121 -36.87951 -34.40721 -32.09391 -30.80056 -29.60128 -27.83099 -27.18049 -24.58994 -23.00994 -22.34817 -20.90686 -18.84530 -17.98896 -16.93891 -16.71244 -16.09627 -15.82303 -15.25768 -15.04819 -14.71302 -14.38810 -14.28333 -13.89249 -13.56991 -12.94493 -12.68465 -12.60754 -12.23582 -12.08236 -11.85781 -11.65179 -11.25562 -11.05280 -10.86266 -10.82832 -10.66297 -10.16384 -9.96103 -9.75065 -8.96373 -8.87850 -8.47698 -8.20834 -7.98830 -6.02212 -4.06913 0.88752 1.32732 3.06488 3.32098 3.36085 3.38970 3.44266 4.01128 4.35550 4.43587 4.61591 4.75818 4.99995 5.07414 5.11477 5.26727 5.30721 5.45369 5.66078 5.74595 6.03425 6.08929 6.13082 6.20174 6.22920 6.37661 6.68681 6.78188 6.85183 6.92871 7.16389 7.43077 7.57165 7.79818 8.02011 8.27967 8.72371 8.98183 9.57510 11.04209 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.006645 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.430371 B = 4212.486861 C = 5128.939255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C 0.013 3.987 4 H 0.051 0.949 5 C -0.506 4.506 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.397 3.603 14 O -0.440 6.440 15 C -0.161 4.161 16 C -0.064 4.064 17 C 0.039 3.961 18 F -0.142 7.142 19 C -0.094 4.094 20 C -0.204 4.204 21 C 0.162 3.838 22 O -0.279 6.279 23 C 0.021 3.979 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.039 0.961 29 H 0.262 0.738 30 H 0.164 0.836 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 6.083 8.190 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.148 4.148 3 C -0.006 4.006 4 H 0.069 0.931 5 C -0.544 4.544 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.273 3.727 14 O -0.313 6.313 15 C -0.163 4.163 16 C -0.083 4.083 17 C 0.020 3.980 18 F -0.121 7.121 19 C -0.113 4.113 20 C -0.223 4.223 21 C 0.114 3.886 22 O -0.190 6.190 23 C -0.074 4.074 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.181 0.819 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.991 5.930 8.508 15.111 hybrid contribution 0.354 0.179 -0.217 0.452 sum -10.637 6.109 8.291 14.806 Atomic orbital electron populations 1.22282 0.99237 1.00146 1.00111 1.21505 0.91513 0.98203 1.03549 1.19166 0.97875 0.93342 0.90202 0.93139 1.21063 0.90010 1.37812 1.05524 0.91446 1.24927 0.98440 0.95077 0.95503 1.69844 1.35045 1.38724 1.09550 0.86553 0.85352 0.78343 0.77195 1.20148 1.21299 1.20229 1.23042 0.82886 0.75721 0.91055 1.90418 1.51368 1.48756 1.40802 1.20531 0.99454 1.04626 0.91649 1.21811 0.90869 0.95397 1.00204 1.17429 0.89391 1.05350 0.85835 1.91485 1.68672 1.95235 1.56673 1.20987 1.00233 0.98518 0.91562 1.20994 0.93861 1.06787 1.00615 1.19411 0.88501 0.92892 0.87796 1.86384 1.39412 1.72590 1.20600 1.23142 1.01479 0.96652 0.86143 0.94151 0.93975 0.93060 0.87600 0.94262 0.92811 0.81909 0.84622 0.84467 0.88063 0.92741 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.23 37.15 0.31 -2.73 16 2 C -0.11 -2.55 5.23 -26.73 -0.14 -2.69 16 3 C 0.01 0.32 1.76 -92.92 -0.16 0.16 16 4 H 0.05 1.27 6.73 -51.93 -0.35 0.92 16 5 C -0.51 -14.22 8.33 -34.44 -0.29 -14.50 16 6 H 0.07 1.97 7.03 -52.49 -0.37 1.60 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.80 11.29 55.43 0.63 -24.17 16 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.40 9.19 5.87 -30.85 -0.18 9.01 16 14 O -0.44 -11.28 14.62 -16.38 -0.24 -11.52 16 15 C -0.16 -3.07 4.92 -104.95 -0.52 -3.58 16 16 C -0.06 -1.10 7.02 -39.04 -0.27 -1.37 16 17 C 0.04 0.59 7.28 -39.50 -0.29 0.30 16 18 F -0.14 -2.12 17.26 2.25 0.04 -2.08 16 19 C -0.09 -1.18 10.01 -39.44 -0.39 -1.57 16 20 C -0.20 -2.61 9.02 -39.49 -0.36 -2.97 16 21 C 0.16 2.70 6.71 -38.60 -0.26 2.44 16 22 O -0.28 -4.74 8.57 -40.52 -0.35 -5.09 16 23 C 0.02 0.23 9.81 101.05 0.99 1.22 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.76 5.31 -51.93 -0.28 0.49 16 26 H 0.05 0.92 6.47 -51.93 -0.34 0.58 16 27 H 0.11 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.16 2.85 4.27 -52.49 -0.22 2.63 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.14 1.29 6.29 -52.49 -0.33 0.96 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 35 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -30.88 290.26 -6.04 -36.92 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.82 Total: -0.36 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.66 Total: -14.69 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.63 Total: -24.17 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.59 Total: -16.61 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.88 -6.04 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383599541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.698 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds