Wall clock time and date at job start Mon Mar 30 2020 07:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 H 1.09005 * 109.47434 * 305.00082 * 3 2 1 5 5 C 1.50702 * 109.47361 * 184.99884 * 3 2 1 6 6 H 1.07998 * 119.99951 * 240.00471 * 5 3 2 7 7 C 1.37877 * 120.00157 * 59.99874 * 5 3 2 8 8 N 1.31519 * 119.99485 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00053 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47564 * 60.00141 * 9 7 5 11 11 H 1.48506 * 109.47143 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47416 * 299.99810 * 9 7 5 13 13 C 1.50703 * 109.47044 * 64.99828 * 3 2 1 14 14 O 1.21298 * 119.99946 * 95.00317 * 13 3 2 15 15 C 1.46788 * 119.99988 * 275.00065 * 13 3 2 16 16 C 1.40035 * 120.21123 * 359.97438 * 15 13 3 17 17 C 1.37869 * 119.85211 * 179.72550 * 16 15 13 18 18 F 1.35104 * 119.85486 * 179.97438 * 17 16 15 19 19 C 1.38810 * 120.28947 * 0.02562 * 17 16 15 20 20 C 1.38053 * 120.42853 * 359.97438 * 19 17 16 21 21 C 1.38666 * 120.14277 * 0.04700 * 20 19 17 22 22 O 1.35633 * 120.14644 * 180.02562 * 21 20 19 23 23 C 1.42901 * 117.00012 * 359.95000 * 22 21 20 24 24 H 1.08993 * 109.47667 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47555 * 300.00641 * 1 2 3 26 26 H 1.09005 * 109.47225 * 59.99887 * 1 2 3 27 27 H 1.09000 * 109.47123 * 240.00167 * 2 1 3 28 28 H 1.09004 * 109.46852 * 119.99720 * 2 1 3 29 29 H 0.97003 * 119.99756 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.06850 * 359.69963 * 16 15 13 31 31 H 1.08001 * 119.78296 * 179.97438 * 19 17 16 32 32 H 1.07999 * 119.92530 * 180.02562 * 20 19 17 33 33 H 1.09005 * 109.47125 * 180.02562 * 23 22 21 34 34 H 1.08998 * 109.46915 * 299.99713 * 23 22 21 35 35 H 1.08997 * 109.47048 * 60.00427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8800 -1.3810 10 1 6.5967 0.1452 -0.2342 11 1 6.3979 0.2167 -2.6502 12 1 6.5005 2.2799 -1.3807 13 6 1.6413 2.1163 1.2877 14 8 2.4160 2.1484 2.2205 15 6 0.3155 2.7337 1.4131 16 6 -0.5821 2.6997 0.3388 17 6 -1.8275 3.2770 0.4665 18 9 -2.6934 3.2447 -0.5701 19 6 -2.1954 3.8923 1.6552 20 6 -1.3198 3.9326 2.7218 21 6 -0.0626 3.3580 2.6127 22 8 0.7975 3.3971 3.6607 23 6 0.3432 4.0483 4.8488 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8901 29 1 3.8293 -0.0610 -2.9499 30 1 -0.2991 2.2227 -0.5879 31 1 -3.1730 4.3423 1.7462 32 1 -1.6147 4.4130 3.6430 33 1 1.1258 4.0089 5.6066 34 1 0.1066 5.0885 4.6252 35 1 -0.5489 3.5445 5.2208 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383599541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:34 Heat of formation + Delta-G solvation = -112.136634 kcal Electronic energy + Delta-G solvation = -20512.383926 eV Core-core repulsion = 17196.950148 eV Total energy + Delta-G solvation = -3315.433778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.79846 -41.57600 -39.76396 -38.13535 -36.30436 -33.93729 -32.21516 -30.75911 -29.68295 -28.14116 -26.29604 -24.64929 -23.65759 -22.38974 -20.48101 -19.20090 -18.48201 -18.10756 -17.75850 -16.96957 -16.80377 -16.35453 -16.15050 -15.93721 -15.56386 -15.48224 -15.09917 -14.46574 -14.13256 -13.86120 -13.72082 -13.52921 -13.29339 -13.16014 -12.88581 -12.74582 -12.58559 -12.18491 -12.08101 -11.95126 -11.70555 -11.56530 -10.99285 -10.52847 -10.15417 -10.03275 -9.16608 -8.14621 -6.26974 -0.38037 0.16420 1.39500 1.41080 1.49210 1.58910 2.29497 2.41036 2.63222 3.11697 3.17082 3.37002 3.65629 3.89795 4.06141 4.34469 4.35471 4.41460 4.43266 4.50860 4.63580 4.71585 4.74417 4.85684 4.94669 5.00023 5.02386 5.15928 5.24762 5.32517 5.58730 5.66544 5.73315 5.96836 6.24690 6.39022 6.77227 6.96012 7.39893 8.89924 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.006645 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.430371 B = 4212.486861 C = 5128.939255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C 0.008 3.992 4 H 0.041 0.959 5 C -0.536 4.536 6 H 0.044 0.956 7 C 0.022 3.978 8 N -0.907 5.907 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.274 1.274 13 C 0.398 3.602 14 O -0.481 6.481 15 C -0.199 4.199 16 C -0.070 4.070 17 C 0.033 3.967 18 F -0.142 7.142 19 C -0.066 4.066 20 C -0.186 4.186 21 C 0.159 3.841 22 O -0.318 6.318 23 C 0.009 3.991 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.021 0.979 29 H 0.266 0.734 30 H 0.148 0.852 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 7.413 9.285 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.011 4.011 4 H 0.059 0.941 5 C -0.574 4.574 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.198 1.198 12 H -0.199 1.199 13 C 0.278 3.722 14 O -0.359 6.359 15 C -0.201 4.201 16 C -0.089 4.089 17 C 0.014 3.986 18 F -0.121 7.121 19 C -0.084 4.084 20 C -0.205 4.205 21 C 0.111 3.889 22 O -0.230 6.230 23 C -0.085 4.085 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.165 0.835 31 H 0.199 0.801 32 H 0.200 0.800 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.462 7.262 9.592 18.055 hybrid contribution 1.047 -0.168 -0.500 1.172 sum -12.415 7.094 9.092 16.945 Atomic orbital electron populations 1.22136 0.95652 1.01665 1.00988 1.21315 0.94692 0.96734 1.01305 1.19132 0.96177 0.94456 0.91362 0.94119 1.21270 0.92010 1.38646 1.05485 0.93789 1.25592 1.02480 0.94571 0.95096 1.69935 1.36426 1.38582 1.09670 0.85686 0.80530 0.78412 0.77491 1.20280 1.19791 1.19930 1.23005 0.84655 0.75034 0.89533 1.90377 1.53124 1.50782 1.41571 1.20032 0.97807 1.07995 0.94231 1.21606 0.91907 0.96227 0.99139 1.17500 0.88544 1.05650 0.86886 1.91490 1.68352 1.95268 1.56949 1.21485 1.01615 0.95698 0.89635 1.21413 0.91649 1.05082 1.02310 1.19581 0.89872 0.92515 0.86949 1.86341 1.41030 1.73387 1.22210 1.23530 1.02915 0.97834 0.84225 0.92191 0.93075 0.92242 0.90067 0.96021 0.92500 0.83495 0.80105 0.80025 0.87287 0.90391 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 8.23 71.98 0.59 -5.04 16 2 C -0.10 -4.98 5.23 30.59 0.16 -4.82 16 3 C 0.01 0.40 1.76 -12.28 -0.02 0.38 16 4 H 0.04 2.18 6.73 -2.38 -0.02 2.16 16 5 C -0.54 -31.79 8.33 25.60 0.21 -31.58 16 6 H 0.04 2.75 7.03 -2.91 -0.02 2.72 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -51.81 11.29 21.45 0.24 -51.57 16 9 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.40 19.40 5.87 27.92 0.16 19.56 16 14 O -0.48 -26.16 14.62 17.88 0.26 -25.90 16 15 C -0.20 -7.65 4.92 -20.08 -0.10 -7.75 16 16 C -0.07 -2.37 7.02 22.62 0.16 -2.21 16 17 C 0.03 0.91 7.28 22.32 0.16 1.07 16 18 F -0.14 -3.86 17.26 44.97 0.78 -3.09 16 19 C -0.07 -1.32 10.01 22.36 0.22 -1.09 16 20 C -0.19 -3.90 9.02 22.33 0.20 -3.70 16 21 C 0.16 5.04 6.71 22.90 0.15 5.19 16 22 O -0.32 -10.51 8.57 -68.49 -0.59 -11.10 16 23 C 0.01 0.16 9.81 113.37 1.11 1.27 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 1.86 5.31 -2.38 -0.01 1.85 16 26 H 0.06 2.15 6.47 -2.38 -0.02 2.14 16 27 H 0.08 4.34 5.95 -2.39 -0.01 4.32 16 28 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.15 5.31 4.27 -2.91 -0.01 5.30 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.18 2.19 6.29 -2.91 -0.02 2.18 16 33 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.08 1.06 7.66 -2.39 -0.02 1.04 16 35 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 Total: -1.00 -71.53 290.26 7.31 -64.21 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.12 Total: 6.96 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.47 Total: -27.00 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.24 Total: -51.57 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.33 Total: -37.00 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.53 7.31 -64.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383599541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.923 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds