Wall clock time and date at job start Mon Mar 30 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48501 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47277 * 300.00322 * 3 2 1 6 6 H 1.48503 * 109.47020 * 59.99982 * 3 2 1 7 7 C 1.37877 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47073 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47247 * 179.97438 * 11 10 9 13 13 S 1.81395 * 109.47015 * 179.97438 * 12 11 10 14 14 O 1.42105 * 109.46783 * 63.61504 * 13 12 11 15 15 C 1.81400 * 103.00021 * 179.97438 * 13 12 11 16 16 C 1.50691 * 109.47419 * 180.02562 * 15 13 12 17 17 C 1.38237 * 120.00445 * 269.72755 * 16 15 13 18 18 C 1.38231 * 120.00108 * 179.76353 * 17 16 15 19 19 C 1.38227 * 120.00032 * 0.50997 * 18 17 16 20 20 C 1.38236 * 120.00259 * 359.74510 * 19 18 17 21 21 C 1.38229 * 119.99820 * 0.02562 * 20 19 18 22 22 H 0.97010 * 119.99756 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47355 * 60.00186 * 9 7 2 24 24 H 1.08997 * 109.47052 * 299.99688 * 9 7 2 25 25 H 1.08998 * 109.47233 * 59.99722 * 10 9 7 26 26 H 1.09004 * 109.46976 * 299.99567 * 10 9 7 27 27 H 1.08998 * 109.46929 * 59.99708 * 11 10 9 28 28 H 1.09004 * 109.46729 * 299.99550 * 11 10 9 29 29 H 1.08998 * 109.46873 * 59.99669 * 12 11 10 30 30 H 1.08993 * 109.47055 * 300.00059 * 12 11 10 31 31 H 1.09000 * 109.47191 * 300.00533 * 15 13 12 32 32 H 1.09007 * 109.47076 * 59.99824 * 15 13 12 33 33 H 1.07999 * 119.99335 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99919 * 180.23087 * 18 17 16 35 35 H 1.08004 * 120.00118 * 179.72489 * 19 18 17 36 36 H 1.07997 * 120.00322 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.00535 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 16 1.5672 -7.7210 -0.0018 14 8 0.8143 -7.8331 -1.2018 15 6 2.8938 -8.9582 -0.0034 16 6 2.2922 -10.3398 -0.0042 17 6 2.0220 -10.9768 1.1925 18 6 1.4656 -12.2422 1.1918 19 6 1.1891 -12.8749 -0.0057 20 6 1.4642 -12.2402 -1.2025 21 6 2.0162 -10.9729 -1.2018 22 1 -0.4850 0.8402 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6044 0.8894 26 1 2.8717 -3.6044 -0.8906 27 1 0.8537 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8887 29 1 3.1010 -6.0928 0.8881 30 1 3.1008 -6.0919 -0.8917 31 1 3.5093 -8.8298 -0.8938 32 1 3.5107 -8.8306 0.8862 33 1 2.2425 -10.4844 2.1281 34 1 1.2511 -12.7384 2.1268 35 1 0.7585 -13.8654 -0.0063 36 1 1.2486 -12.7347 -2.1381 37 1 2.2315 -10.4770 -2.1367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385199461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:28 Heat of formation + Delta-G solvation = -40.687043 kcal Electronic energy + Delta-G solvation = -16638.475132 eV Core-core repulsion = 13892.352817 eV Total energy + Delta-G solvation = -2746.122315 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40420 -35.64427 -35.14735 -33.05148 -32.63220 -31.11894 -29.51732 -27.34851 -25.23456 -22.81022 -22.24272 -21.42458 -20.09766 -17.53693 -16.95548 -16.22118 -15.64976 -15.54625 -15.38869 -15.08429 -14.53619 -14.27708 -13.75583 -13.51240 -13.31463 -12.84912 -12.66574 -12.57256 -12.06428 -11.81901 -11.67322 -11.43676 -11.22414 -11.03578 -10.69550 -10.63689 -10.49367 -10.24097 -9.67114 -9.35418 -9.15662 -9.09421 -8.77750 -8.33427 -8.10711 -5.98107 -4.00470 0.89663 1.17098 1.68629 2.63909 3.31633 3.38938 3.43034 3.58781 3.79350 4.44087 4.47184 4.57004 4.77449 4.89053 4.97643 5.14217 5.24088 5.26688 5.37534 5.38292 5.40242 5.78083 5.80215 5.80842 5.99094 6.18739 6.21691 6.28208 6.34065 6.42678 6.73769 6.75719 6.89657 7.14443 7.70338 7.85337 8.02526 8.45137 9.07071 9.63444 11.13276 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.065868 B = 0.002693 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.990389 B =10396.700616 C =10461.508274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.017 3.983 10 C -0.104 4.104 11 C -0.101 4.101 12 C -0.441 4.441 13 S 1.239 4.761 14 O -0.839 6.839 15 C -0.415 4.415 16 C -0.062 4.062 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.112 4.112 22 H 0.260 0.740 23 H 0.015 0.985 24 H 0.018 0.982 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -25.230 4.948 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.020 4.020 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.579 4.579 13 S 1.439 4.561 14 O -0.834 6.834 15 C -0.549 4.549 16 C -0.063 4.063 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.131 4.131 22 H 0.069 0.931 23 H 0.034 0.966 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.446 -25.259 4.916 25.963 hybrid contribution 1.894 1.216 -1.930 2.964 sum 5.339 -24.043 2.986 24.810 Atomic orbital electron populations 1.69979 1.06047 1.26451 1.51005 1.25041 0.94858 0.99268 0.95416 0.86548 0.80078 0.83856 0.77579 1.19798 1.21043 1.20977 1.21306 0.93032 0.91148 1.50331 0.92719 1.19141 0.94110 0.91401 0.97318 1.21627 0.98999 0.93399 1.00288 1.21308 0.96792 0.93549 1.02333 1.27702 1.09401 1.13532 1.07250 1.70785 0.86918 0.85836 1.12565 1.93133 1.55956 1.83500 1.50796 1.26792 1.14364 1.05629 1.08144 1.19150 0.99404 0.94016 0.93741 1.21096 0.99717 0.95357 0.97426 1.21151 0.99089 0.95217 0.98139 1.21173 1.00496 1.00066 0.92645 1.21138 0.98933 0.95066 0.98306 1.21116 0.99091 0.95166 0.97738 0.93062 0.96649 0.96403 0.93118 0.93662 0.92001 0.91226 0.86653 0.89934 0.88835 0.85597 0.85153 0.85749 0.86089 0.86061 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.46 4.97 -27.88 -0.14 0.32 16 10 C -0.10 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.10 -1.71 5.22 -26.73 -0.14 -1.85 16 12 C -0.44 -5.56 5.92 37.16 0.22 -5.34 16 13 S 1.24 13.74 13.14 -107.50 -1.41 12.33 16 14 O -0.84 -14.86 18.14 -35.23 -0.64 -15.49 16 15 C -0.42 -3.76 6.05 36.00 0.22 -3.54 16 16 C -0.06 -0.63 5.14 -104.63 -0.54 -1.17 16 17 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 18 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 19 C -0.13 -1.05 10.05 -39.59 -0.40 -1.45 16 20 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 21 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.92 8.08 -51.92 -0.42 0.50 16 32 H 0.13 0.74 8.08 -51.92 -0.42 0.32 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -36.63 329.64 -10.13 -46.77 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.88 Total: -3.89 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: -2.89 Total: -34.94 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.62 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.64 Total: -15.49 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 13.74 SS G_CDS: -1.41 Total: 12.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.63 -10.13 -46.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385199461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.081 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds