Wall clock time and date at job start Mon Mar 30 2020 06:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48501 * 109.47131 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47277 * 300.00322 * 3 2 1 6 6 H 1.48503 * 109.47020 * 59.99982 * 3 2 1 7 7 C 1.37877 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47073 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47247 * 179.97438 * 11 10 9 13 13 S 1.81395 * 109.47015 * 179.97438 * 12 11 10 14 14 O 1.42105 * 109.46783 * 63.61504 * 13 12 11 15 15 C 1.81400 * 103.00021 * 179.97438 * 13 12 11 16 16 C 1.50691 * 109.47419 * 180.02562 * 15 13 12 17 17 C 1.38237 * 120.00445 * 269.72755 * 16 15 13 18 18 C 1.38231 * 120.00108 * 179.76353 * 17 16 15 19 19 C 1.38227 * 120.00032 * 0.50997 * 18 17 16 20 20 C 1.38236 * 120.00259 * 359.74510 * 19 18 17 21 21 C 1.38229 * 119.99820 * 0.02562 * 20 19 18 22 22 H 0.97010 * 119.99756 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47355 * 60.00186 * 9 7 2 24 24 H 1.08997 * 109.47052 * 299.99688 * 9 7 2 25 25 H 1.08998 * 109.47233 * 59.99722 * 10 9 7 26 26 H 1.09004 * 109.46976 * 299.99567 * 10 9 7 27 27 H 1.08998 * 109.46929 * 59.99708 * 11 10 9 28 28 H 1.09004 * 109.46729 * 299.99550 * 11 10 9 29 29 H 1.08998 * 109.46873 * 59.99669 * 12 11 10 30 30 H 1.08993 * 109.47055 * 300.00059 * 12 11 10 31 31 H 1.09000 * 109.47191 * 300.00533 * 15 13 12 32 32 H 1.09007 * 109.47076 * 59.99824 * 15 13 12 33 33 H 1.07999 * 119.99335 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99919 * 180.23087 * 18 17 16 35 35 H 1.08004 * 120.00118 * 179.72489 * 19 18 17 36 36 H 1.07997 * 120.00322 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.00535 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 16 1.5672 -7.7210 -0.0018 14 8 0.8143 -7.8331 -1.2018 15 6 2.8938 -8.9582 -0.0034 16 6 2.2922 -10.3398 -0.0042 17 6 2.0220 -10.9768 1.1925 18 6 1.4656 -12.2422 1.1918 19 6 1.1891 -12.8749 -0.0057 20 6 1.4642 -12.2402 -1.2025 21 6 2.0162 -10.9729 -1.2018 22 1 -0.4850 0.8402 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8718 -3.6044 0.8894 26 1 2.8717 -3.6044 -0.8906 27 1 0.8537 -5.0445 -0.8914 28 1 0.8532 -5.0451 0.8887 29 1 3.1010 -6.0928 0.8881 30 1 3.1008 -6.0919 -0.8917 31 1 3.5093 -8.8298 -0.8938 32 1 3.5107 -8.8306 0.8862 33 1 2.2425 -10.4844 2.1281 34 1 1.2511 -12.7384 2.1268 35 1 0.7585 -13.8654 -0.0063 36 1 1.2486 -12.7347 -2.1381 37 1 2.2315 -10.4770 -2.1367 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385199461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:28 Heat of formation + Delta-G solvation = -63.996326 kcal Electronic energy + Delta-G solvation = -16639.485898 eV Core-core repulsion = 13892.352817 eV Total energy + Delta-G solvation = -2747.133081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05553 -36.90685 -36.74288 -34.64790 -33.73526 -31.76721 -31.28436 -28.12342 -27.04970 -23.81826 -23.46853 -22.32995 -21.72716 -18.52805 -18.39338 -17.63134 -16.67675 -16.60248 -16.32768 -16.20210 -16.11056 -15.33710 -14.86123 -14.57669 -14.27020 -14.08801 -13.84075 -13.69318 -13.53950 -13.36669 -12.95958 -12.79781 -12.39248 -12.31983 -12.19060 -12.07570 -11.86113 -11.57341 -11.42413 -11.29563 -10.89820 -10.57029 -9.82854 -9.69829 -9.04633 -8.20782 -6.32526 0.12353 0.50274 0.86636 1.38980 1.39689 1.53042 1.76159 2.40215 2.82030 2.95548 3.11927 3.71055 3.91913 3.95358 4.06090 4.16632 4.26934 4.35600 4.42525 4.57736 4.64108 4.73609 4.78148 4.85992 4.95430 5.11550 5.13853 5.18281 5.25582 5.31611 5.52995 5.57203 5.63843 5.64884 5.75677 5.85850 6.12998 6.24406 6.85360 7.36923 8.91360 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.065868 B = 0.002693 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.990389 B =10396.700616 C =10461.508274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.017 3.983 10 C -0.094 4.094 11 C -0.102 4.102 12 C -0.438 4.438 13 S 1.285 4.715 14 O -0.913 6.913 15 C -0.402 4.402 16 C -0.083 4.083 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.145 4.145 22 H 0.264 0.736 23 H -0.020 1.020 24 H 0.001 0.999 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.158 0.842 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.385 -26.166 7.406 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.140 4.140 12 C -0.575 4.575 13 S 1.488 4.512 14 O -0.909 6.909 15 C -0.538 4.538 16 C -0.085 4.085 17 C -0.134 4.134 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.164 4.164 22 H 0.072 0.928 23 H -0.002 1.002 24 H 0.019 0.981 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.176 0.824 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.188 0.812 33 H 0.184 0.816 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.146 0.854 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.266 -26.179 7.367 27.701 hybrid contribution 1.331 1.379 -2.667 3.284 sum 6.597 -24.801 4.700 26.090 Atomic orbital electron populations 1.70116 1.07894 1.27739 1.51795 1.26047 0.95820 1.03575 0.94762 0.85361 0.79051 0.78571 0.77822 1.18480 1.20673 1.19954 1.21762 0.93583 0.92437 1.50354 0.92095 1.19097 0.94693 0.93502 0.94755 1.21461 0.97897 0.93147 1.00802 1.21199 0.97396 0.93506 1.01906 1.27658 1.08636 1.12427 1.08828 1.69886 0.86472 0.84902 1.09970 1.93019 1.59930 1.84732 1.53235 1.26679 1.13247 1.03983 1.09925 1.19353 1.00419 0.94552 0.94163 1.21547 0.98424 0.95508 0.97925 1.21611 0.97907 0.95182 0.99106 1.21533 0.99866 1.01026 0.92384 1.21351 0.99329 0.94883 0.99626 1.21232 1.01016 0.96355 0.97820 0.92752 1.00197 0.98072 0.91120 0.94401 0.95087 0.89265 0.82430 0.90992 0.89799 0.81150 0.81552 0.82692 0.83857 0.85373 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.96 16 2 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 0.91 4.97 29.85 0.15 1.06 16 10 C -0.09 -3.90 5.15 30.60 0.16 -3.74 16 11 C -0.10 -3.42 5.22 30.60 0.16 -3.26 16 12 C -0.44 -10.28 5.92 71.98 0.43 -9.85 16 13 S 1.28 27.17 13.14 -56.49 -0.74 26.43 16 14 O -0.91 -33.63 18.14 -148.98 -2.70 -36.33 16 15 C -0.40 -6.37 6.05 71.23 0.43 -5.93 16 16 C -0.08 -1.57 5.14 -19.87 -0.10 -1.67 16 17 C -0.12 -1.51 9.70 22.27 0.22 -1.29 16 18 C -0.12 -1.50 10.05 22.27 0.22 -1.27 16 19 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 20 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 21 C -0.14 -3.34 9.70 22.27 0.22 -3.12 16 22 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 23 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.17 1.16 8.08 -2.39 -0.02 1.14 16 33 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 34 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.10 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -83.39 329.64 2.90 -80.49 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: 1.02 Total: 4.85 kcal Atomic # 6 Polarization: -67.41 SS G_CDS: 3.02 Total: -64.39 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.28 Total: -57.96 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -2.70 Total: -36.33 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 27.17 SS G_CDS: -0.74 Total: 26.43 kcal Total: -83.39 2.90 -80.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385199461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.492 kcal (2) G-P(sol) polarization free energy of solvation -83.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds