Wall clock time and date at job start Mon Mar 30 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46710 * 299.99533 * 3 2 1 6 6 H 1.48493 * 109.47149 * 59.99723 * 3 2 1 7 7 C 1.37875 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47052 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47042 * 180.02562 * 12 11 10 14 14 C 1.76196 * 102.99988 * 179.97438 * 13 12 11 15 15 C 1.38979 * 120.07969 * 180.02562 * 14 13 12 16 16 C 1.38085 * 119.91784 * 180.02562 * 15 14 13 17 17 C 1.38298 * 120.08130 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.91928 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00082 * 18 17 16 20 20 C 1.38306 * 120.16030 * 0.27010 * 17 16 15 21 21 C 1.38080 * 120.07826 * 359.46211 * 20 17 16 22 22 H 0.96995 * 119.99709 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46876 * 59.99784 * 9 7 2 24 24 H 1.08993 * 109.46729 * 299.99857 * 9 7 2 25 25 H 1.09005 * 109.46815 * 59.99873 * 10 9 7 26 26 H 1.08997 * 109.47440 * 300.00327 * 10 9 7 27 27 H 1.08998 * 109.47490 * 59.99795 * 11 10 9 28 28 H 1.09006 * 109.47145 * 299.99794 * 11 10 9 29 29 H 1.08994 * 109.47702 * 59.99807 * 12 11 10 30 30 H 1.09001 * 109.46708 * 299.99165 * 12 11 10 31 31 H 1.08005 * 120.03952 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.95566 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.47247 * 330.00017 * 18 17 16 34 34 H 1.09001 * 109.47358 * 209.99444 * 18 17 16 35 35 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.95959 * 179.72792 * 20 17 16 37 37 H 1.07998 * 120.03744 * 180.27274 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 16 1.5676 -7.7210 -0.0010 14 6 2.8562 -8.9226 -0.0008 15 6 2.5455 -10.2772 -0.0024 16 6 3.5580 -11.2161 -0.0017 17 6 4.8800 -10.8099 0.0000 18 6 5.9822 -11.8377 0.0001 19 8 6.3319 -12.1613 -1.3471 20 6 5.1930 -9.4627 0.0066 21 6 4.1858 -8.5182 0.0004 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8906 26 1 2.8720 -3.6044 -0.8894 27 1 0.8539 -5.0446 -0.8903 28 1 0.8534 -5.0451 0.8897 29 1 3.1007 -6.0924 0.8909 30 1 3.1018 -6.0922 -0.8891 31 1 1.5133 -10.5952 -0.0032 32 1 3.3173 -12.2689 -0.0024 33 1 5.6404 -12.7368 0.5128 34 1 6.8544 -11.4350 0.5151 35 1 7.0372 -12.8183 -1.4234 36 1 6.2265 -9.1492 0.0124 37 1 4.4310 -7.4664 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385215605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:23 Heat of formation + Delta-G solvation = -54.356341 kcal Electronic energy + Delta-G solvation = -16401.938476 eV Core-core repulsion = 13655.223416 eV Total energy + Delta-G solvation = -2746.715060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49701 -36.90743 -35.29019 -32.72218 -32.01072 -31.25582 -29.50079 -26.44214 -25.32067 -23.06737 -21.92428 -21.59891 -20.16957 -17.82416 -17.72069 -16.23298 -16.13592 -15.85563 -15.24763 -14.90472 -14.44109 -14.24537 -14.05298 -13.65350 -13.37587 -12.96361 -12.71763 -12.62027 -12.05312 -11.68253 -11.47564 -11.22314 -11.12408 -10.73939 -10.61101 -10.48734 -10.45665 -10.11877 -9.80233 -9.72476 -9.32923 -9.17828 -9.04261 -8.35623 -7.43276 -6.00338 -4.02880 0.92073 1.18315 1.51522 2.45268 3.30662 3.35534 3.38082 3.42065 4.13981 4.45481 4.50480 4.66261 4.78036 4.89631 5.00871 5.05498 5.10583 5.16548 5.35483 5.38460 5.53448 5.65211 5.78890 5.92440 6.04355 6.05908 6.10194 6.32328 6.35294 6.67003 6.67007 6.82495 7.08453 7.22317 7.67123 7.80892 7.99694 8.41746 9.04498 9.61281 11.11034 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040087 B = 0.002682 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.304711 B =10436.639727 C =11030.547872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.104 4.104 12 C -0.100 4.100 13 S -0.123 6.123 14 C -0.070 4.070 15 C -0.108 4.108 16 C -0.081 4.081 17 C -0.109 4.109 18 C 0.120 3.880 19 O -0.568 6.568 20 C -0.078 4.078 21 C -0.138 4.138 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.379 0.621 36 H 0.125 0.875 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -24.762 0.957 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.248 4.248 13 S 0.124 5.876 14 C -0.183 4.183 15 C -0.132 4.132 16 C -0.101 4.101 17 C -0.112 4.112 18 C 0.042 3.958 19 O -0.374 6.374 20 C -0.098 4.098 21 C -0.162 4.162 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.226 0.774 36 H 0.143 0.857 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.322 -24.251 0.836 25.653 hybrid contribution 2.234 0.716 0.151 2.351 sum 10.556 -23.535 0.987 25.813 Atomic orbital electron populations 1.69979 1.06051 1.26495 1.50929 1.25040 0.94862 0.99297 0.95365 0.86540 0.80087 0.83811 0.77591 1.19763 1.20997 1.21008 1.21289 0.93049 0.91080 1.50451 0.92664 1.19108 0.94004 0.91216 0.97368 1.21638 0.99156 0.93027 1.00504 1.21483 0.97147 0.92660 1.03010 1.23894 1.01914 0.93611 1.05349 1.85643 1.11696 0.98900 1.91333 1.21957 0.96712 0.97336 1.02342 1.20761 0.99672 0.90721 1.02027 1.20925 0.91771 0.99282 0.98127 1.19572 0.93984 0.93860 1.03811 1.20949 0.95216 0.95857 0.83728 1.86597 1.59614 1.64685 1.26464 1.20931 0.99092 0.92093 0.97671 1.21248 0.91525 1.00191 1.03202 0.93044 0.96500 0.96493 0.93171 0.93166 0.91293 0.91312 0.89525 0.89520 0.85318 0.85643 0.92785 0.92778 0.77425 0.85734 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.08 5.15 -26.73 -0.14 -2.22 16 11 C -0.10 -1.74 5.22 -26.73 -0.14 -1.88 16 12 C -0.10 -1.38 4.33 37.16 0.16 -1.22 16 13 S -0.12 -1.69 21.92 -107.50 -2.36 -4.04 16 14 C -0.07 -0.90 6.11 -39.04 -0.24 -1.14 16 15 C -0.11 -1.23 9.79 -39.36 -0.39 -1.62 16 16 C -0.08 -0.82 9.69 -39.62 -0.38 -1.21 16 17 C -0.11 -1.11 5.51 -104.58 -0.58 -1.69 16 18 C 0.12 0.89 7.17 36.01 0.26 1.15 16 19 O -0.57 -4.72 13.64 -35.23 -0.48 -5.20 16 20 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 21 C -0.14 -1.66 9.36 -39.37 -0.37 -2.02 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.13 7.75 -51.93 -0.40 0.73 16 30 H 0.09 1.15 7.75 -51.92 -0.40 0.75 16 31 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.05 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 35 H 0.38 1.20 9.12 45.56 0.42 1.61 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.45 5.88 -52.49 -0.31 1.14 16 LS Contribution 327.03 15.07 4.93 4.93 Total: -1.00 -32.44 327.03 -9.82 -42.27 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.88 Total: -2.02 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -2.74 Total: -26.28 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.48 Total: -5.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.36 Total: -4.04 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.44 -9.82 -42.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385215605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.090 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds