Wall clock time and date at job start Mon Mar 30 2020 06:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46710 * 299.99533 * 3 2 1 6 6 H 1.48493 * 109.47149 * 59.99723 * 3 2 1 7 7 C 1.37875 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47083 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47052 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47042 * 180.02562 * 12 11 10 14 14 C 1.76196 * 102.99988 * 179.97438 * 13 12 11 15 15 C 1.38979 * 120.07969 * 180.02562 * 14 13 12 16 16 C 1.38085 * 119.91784 * 180.02562 * 15 14 13 17 17 C 1.38298 * 120.08130 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.91928 * 180.02562 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00082 * 18 17 16 20 20 C 1.38306 * 120.16030 * 0.27010 * 17 16 15 21 21 C 1.38080 * 120.07826 * 359.46211 * 20 17 16 22 22 H 0.96995 * 119.99709 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46876 * 59.99784 * 9 7 2 24 24 H 1.08993 * 109.46729 * 299.99857 * 9 7 2 25 25 H 1.09005 * 109.46815 * 59.99873 * 10 9 7 26 26 H 1.08997 * 109.47440 * 300.00327 * 10 9 7 27 27 H 1.08998 * 109.47490 * 59.99795 * 11 10 9 28 28 H 1.09006 * 109.47145 * 299.99794 * 11 10 9 29 29 H 1.08994 * 109.47702 * 59.99807 * 12 11 10 30 30 H 1.09001 * 109.46708 * 299.99165 * 12 11 10 31 31 H 1.08005 * 120.03952 * 359.97438 * 15 14 13 32 32 H 1.08001 * 119.95566 * 179.97438 * 16 15 14 33 33 H 1.09000 * 109.47247 * 330.00017 * 18 17 16 34 34 H 1.09001 * 109.47358 * 209.99444 * 18 17 16 35 35 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.95959 * 179.72792 * 20 17 16 37 37 H 1.07998 * 120.03744 * 180.27274 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 16 1.5676 -7.7210 -0.0010 14 6 2.8562 -8.9226 -0.0008 15 6 2.5455 -10.2772 -0.0024 16 6 3.5580 -11.2161 -0.0017 17 6 4.8800 -10.8099 0.0000 18 6 5.9822 -11.8377 0.0001 19 8 6.3319 -12.1613 -1.3471 20 6 5.1930 -9.4627 0.0066 21 6 4.1858 -8.5182 0.0004 22 1 -0.4849 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8906 26 1 2.8720 -3.6044 -0.8894 27 1 0.8539 -5.0446 -0.8903 28 1 0.8534 -5.0451 0.8897 29 1 3.1007 -6.0924 0.8909 30 1 3.1018 -6.0922 -0.8891 31 1 1.5133 -10.5952 -0.0032 32 1 3.3173 -12.2689 -0.0024 33 1 5.6404 -12.7368 0.5128 34 1 6.8544 -11.4350 0.5151 35 1 7.0372 -12.8183 -1.4234 36 1 6.2265 -9.1492 0.0124 37 1 4.4310 -7.4664 0.0011 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385215605.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:23 Heat of formation + Delta-G solvation = -73.694688 kcal Electronic energy + Delta-G solvation = -16402.777050 eV Core-core repulsion = 13655.223416 eV Total energy + Delta-G solvation = -2747.553634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26897 -37.49360 -36.94037 -34.71325 -32.79779 -32.14699 -31.21557 -27.36002 -26.90790 -24.25696 -23.23401 -22.46626 -21.83041 -18.70816 -18.36613 -18.33191 -16.99735 -16.62483 -16.61388 -16.50444 -15.79335 -15.07455 -14.75516 -14.66679 -14.57982 -14.36360 -14.04587 -13.83793 -13.50840 -13.15807 -12.94946 -12.47928 -12.40360 -12.34090 -12.25187 -11.92062 -11.47214 -11.35041 -11.22224 -11.00305 -10.95481 -10.67477 -10.56557 -9.99985 -8.44382 -8.20653 -6.31959 0.09003 0.36040 0.47692 1.39849 1.40048 1.41694 1.53513 2.40629 2.57079 3.12538 3.58999 3.77797 3.82938 3.87374 3.94559 4.14679 4.27359 4.34677 4.39581 4.47202 4.53506 4.62851 4.67813 4.76460 4.79514 5.01986 5.05688 5.22490 5.23951 5.24295 5.27049 5.52351 5.55008 5.74228 5.85486 5.88509 6.23942 6.85826 6.93369 7.37515 8.91502 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040087 B = 0.002682 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.304711 B =10436.639727 C =11030.547872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.091 4.091 11 C -0.095 4.095 12 C -0.089 4.089 13 S -0.144 6.144 14 C -0.088 4.088 15 C -0.117 4.117 16 C -0.084 4.084 17 C -0.114 4.114 18 C 0.120 3.880 19 O -0.592 6.592 20 C -0.087 4.087 21 C -0.150 4.150 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.400 0.600 36 H 0.143 0.857 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.417 -25.932 1.083 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.130 4.130 11 C -0.134 4.134 12 C -0.237 4.237 13 S 0.102 5.898 14 C -0.201 4.201 15 C -0.141 4.141 16 C -0.104 4.104 17 C -0.117 4.117 18 C 0.042 3.958 19 O -0.401 6.401 20 C -0.106 4.106 21 C -0.173 4.173 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.010 0.990 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.168 0.832 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.250 0.750 36 H 0.160 0.840 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.556 -25.451 0.962 27.570 hybrid contribution 1.568 0.961 0.103 1.842 sum 12.123 -24.490 1.065 27.347 Atomic orbital electron populations 1.70114 1.07861 1.27712 1.51838 1.26028 0.95799 1.03522 0.94804 0.85377 0.79108 0.78671 0.77762 1.18440 1.20409 1.20383 1.21751 0.93626 0.92356 1.50269 0.91998 1.19038 0.94550 0.93213 0.94841 1.21414 0.97983 0.92492 1.01157 1.21258 0.97286 0.92325 1.02482 1.23668 1.01024 0.92670 1.06308 1.85622 1.12775 0.99333 1.92095 1.21982 0.96474 0.97388 1.04293 1.20985 1.00639 0.90507 1.01940 1.21253 0.91568 1.00286 0.97266 1.20034 0.95008 0.94463 1.02181 1.21022 0.94965 0.96006 0.83761 1.86525 1.60865 1.65795 1.26940 1.21219 0.99706 0.92348 0.97367 1.21398 0.91599 1.00774 1.03569 0.92788 0.99100 0.99026 0.92377 0.92484 0.91955 0.91851 0.88465 0.88687 0.84577 0.83226 0.90739 0.91167 0.74955 0.83971 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.11 4.97 29.85 0.15 1.26 16 10 C -0.09 -3.65 5.15 30.59 0.16 -3.50 16 11 C -0.09 -3.18 5.22 30.59 0.16 -3.02 16 12 C -0.09 -2.41 4.33 71.98 0.31 -2.10 16 13 S -0.14 -3.93 21.92 -56.49 -1.24 -5.17 16 14 C -0.09 -2.20 6.11 22.62 0.14 -2.07 16 15 C -0.12 -2.55 9.79 22.41 0.22 -2.33 16 16 C -0.08 -1.53 9.69 22.25 0.22 -1.32 16 17 C -0.11 -2.06 5.51 -19.83 -0.11 -2.17 16 18 C 0.12 1.41 7.17 71.24 0.51 1.92 16 19 O -0.59 -8.23 13.64 -148.98 -2.03 -10.26 16 20 C -0.09 -1.71 9.69 22.25 0.22 -1.49 16 21 C -0.15 -3.44 9.36 22.41 0.21 -3.23 16 22 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.10 2.43 7.75 -2.39 -0.02 2.41 16 30 H 0.09 2.42 7.75 -2.39 -0.02 2.40 16 31 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 34 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.40 1.43 9.12 -74.06 -0.68 0.76 16 36 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.13 2.82 5.88 -2.91 -0.02 2.80 16 Total: -1.00 -69.94 327.03 2.29 -67.66 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.37 Total: 7.29 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 2.87 Total: -48.68 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.41 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -2.03 Total: -10.26 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -1.24 Total: -5.17 kcal Total: -69.94 2.29 -67.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385215605.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.039 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds